David Amidon: The Night Shift, June 4, 2017

NOAA Teacher at Sea

David Amidon

Aboard NOAA Ship Reuben Lasker

June 2 – 13, 2017

Mission: Pelagic Juvenile Rockfish Recruitment and Ecosystem Assessment Survey

Geographic Area of Cruise: Pacific Ocean off the California Coast

Date: June 4, 2017

 

Science and Technology Log

All of the work for the Juvenile Rockfish Survey is completed at night – we probably will not even get going  most nights until after 9 PM. Wonder why so late? Any guesses?

This is a night time operation because we are focused on collecting prey species – we are not catching full grown rockfish, only juveniles which are less than a years old (YOY = Young of the Year). As Keith Sakuma, the Chief Scientist for the Reuben Lasker, explained – this survey gathers information about the juvenile rockfish so that NOAA can pass information onto the states in order to establish a sustainable fishery. This could lead to changes in fishing regulations based on the abundance of the juvenile stocks, which would be adults down the road. They trawl at night for two main reasons- during the day time, the rockfish would simply see the net and swim away. Also, many of the other creatures being catalogued are prey species that hide in the depths during the day to avoid predators, rising to the surface as the night moves on.

The night shift includes the science personnel and the crew of the boat. The boat crew not only operates the ship, but the fisherman also send out the trawl net and bring it back in. While the boat crew rotates on a specified schedule, the night-time science group keeps going until the work is done. However, these two groups are very much in sync and really work well together.  This blog entry will be my introduction into the procedures and initial results of our work from the first couple nights. I will provide much more detail in later posts.

The science personnel for this leg of the voyage includes myself and Chief Scientist Sakuma as well as Cherisa and Ryan, who are members of the NOAA Corps; Thomas, an undergrad student from Humboldt State; Rachel, a PhD student at UC-Santa Cruz; and Maya, a Hollings undergraduate scholar from UNC-Wilmington.

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The Night Crew at work separating species during the shrimp haul. Photo by Keith Sakuma.

The Juvenile Rockfish Survey, boiled to its simplest terms, consists of a midwater trawling net behind the ship, meaning it does not float and it never touches the bottom. Anything caught will be sorted and analyzed by the science crew. In reality, it is a bit more complicated.

First of all, net operations take place at specified stations that the ship revisits periodically and have been used for some time. The stations for a night run on the same latitude line, running west away from the coast.

Before sending the net out, we need to run a Marine Mammal Watch from the bridge for 30 minutes. If a marine mammal, such as a sea lion, dolphin or whale, is spotted, then they make efforts to avoid getting them tangled in their nets, or alter their behavior in any way. Sometimes the trawl for that station has to be abandoned due to wildlife activity, although we have not seen any marine mammals during our investigation so far.

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Getting ready for my shift on the Marine Mammal Watch

Once the ship arrives at a station, the boat crew sends out the net. After it reaches the depth of 30m, they trawl for a 15 minute interval. A science crew member is also sent outside on deck to continue the marine mammal watch for the duration of the trawl. Finally, after the time is up, they bring in the net and empty its contents into buckets, which are then transferred to the science crew.

This is when our work began. While we are on the lookout for rockfish, we actually found very few of these. A majority of our catch consisted of pyrosomes and krill. The science crew employed a number of measures to estimate the numbers of these creatures, as counting them one-by-one would have taken a long, long time to do. We did volume approximations and analysis of representative samples for these creatures. When we found fish or other species of note, we would pull the individuals out, classify them and record their lengths. Samples were frozen for use by researchers working at other locations on the West Coast.

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Measuring the mantle of a Market Squid. Photo by Rachel Zuercher.

Some examples of the species we collected:

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Juvenile Rockfish collected off the “Lost Coast”
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Sample of other species collected and catalogued, including: Medusa Fish, Gonatus Squid, Thetys and California Headlight Fish

We worked solid through four stations on the first night, wrapping up just before 6 AM. We will be at it again, if weather permits, every night of the voyage.

Personal Log

Thursday, June 1st

This was a very long day. I left my house in Syracuse, NY at 6 AM, flying out of the airport around 8 AM. After a quick transfer in Chicago, I flew in a Boeing 737 all the way to San Francisco. I then made it to Eureka, California around 4 PM (West Coast time) for an overnight stay. Fortunately, I met up a few of the science personnel for dinner who were also headed to the Reuben Lasker in the morning. Eureka was beautiful, surrounded by oceans and redwoods.

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Sunset in Eureka, CA

Friday, June 2nd

In the morning, we caught a transfer boat at the public marina out to the Reuben Lasker, anchored a few miles away off the coast. Once the passage was done, we settled in and met some of the crew. I even shared a coffee with the CO- or Commanding Officer. Everyone onboard has been so open and welcoming – you can tell they enjoy their work.

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Transfer boat that to us to the Reuben Lasker

After dinner, we finally got down to sciencing. (That’s my word – I’m sticking to it.) I was impressed by how different the catch was from each station, even though they are only a few miles apart. You can try to start telling a story right there. That’s kind of the point to this whole survey. To try to tell a story about the overall health of the pelagic ecosystem based on representative samples. Piece by piece, year by year, data points can turn into meaning when connections are made. I think it is science in the purest form -gathering data for the sake of having information. By having a long-term data base of information about all of the other creatures collected, not just the rockfish, we can decipher meaning by analyzing population trends and collating them with other phenomena, such as weather, fishing or pollution. 

Saturday, June 3rd

I am getting adjusted to the day/night pattern of the Night Shift. I got to sleep around 6:30 AM and woke up close to 2 PM. I was able to grab a quick cereal from the Galley and then started in on some work. Dinner was served at 5 PM – filet mignon with crab legs? The cooks, or stewards, Kathy & Patrick do an amazing job. They also save meals for people running the late schedule. For the next week and change, lunch is served around midnight and breakfast will be close to 6 AM, before we head to sleep.

Today, the wind picked up and the waves kicked up with it. We cruised around the “Lost Coast” and ran two stations at night. We were scheduled for more, but the waves got larger the further the ship is off the coast. Today’s word is shrimp – we hauled in more shrimp than you could count. We also found a number of rockfish in one of the stations, although there were very few found in our second trawl.

Did You Know?

… that there are over 85 species of krill?

http://www.krillfacts.org/1-krill-facts-center.html

Christopher Tait: Suburban Wilderness, March 27, 2017

 NOAA Teacher at Sea

Christopher Tait

Aboard NOAA Ship Reuben Lasker

March 21, 2017 to April 7, 2017

Mission: Spring Coastal Pelagic Species Survey

Geographic Area of Cruise: Pacific Ocean from San Diego, CA to San Francisco, CA

Date: March 27, 2017

Weather Data from the Bridge

Time 3:35 PDT,

Current Location: near San Nicolas Island, Latitude 33.3 N Longitude -119.2 W

Air Temperature 16.0 oC  (59.5 oF)

Water Temperature 14.9 oC  (58.6 oF)

Wind Speed 19 kts

Barometric pressure 1014.64 hPa

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San Nicolas Island from the Reuben Lasker

Science and Technology Log

Acoustic Trawl

There is a lot of advanced equipment that is used to do a survey of fish that spans the coast of California. The Reuben Lasker has been fitted with state of the art echo-sounders (Figure 1), which send out pulses of sound that bounce off objects and return to the ship in the form of backscatter.  Looking at the backscatter data you can create a profile of the water column and see a variety of organisms swimming beneath the ship.  The target species for the research is the Northern anchovy (Engraulis mordax) and Pacific sardine (Sardinops sagax).  The schools of fish are detected using a range of frequencies.  Looking at graphical representations of these data, or echograms, you can see the bottom as an area with strong echoes and, at times, you can see an area of high-intensity back scatter higher in the water column such as a school of fish or an aggregation of krill or plankton (figure 2).  This would be a school of fish, krill or other organisms.  The geographic location of the school is marked for a return by the ship at night for collection using a trawl.  To conduct a thorough survey, the ship travels back and forth between the coast and a predetermined distance out to sea across the predicted habitat of the target species (Figure 3.)  Scientists referred to this as “mowing the lawn.”

 Figure 1: Reuben Lasker Acoustic-Sampling Beams

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©2014 Oceanography, Volume 27, number 4, Zwolinski et al.

Figure 2: An example echogram, showing the seabed and various sound scatterers in the water column.

Echogram

Figure 3 : Survey Map of the Spring Coastal Pelagic Species Survey 2017

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Scientist Profile:

The Cruise Leader, Kevin Stierhoff, is a fisheries scientist who works for the Advanced Survey Technologies group at NOAA Southwest Fisheries Science Center (SWFSC) in San Diego, CA.  Not only has he been effectively managing this complex science expedition, he has gone out of his way to make me feel welcome and a part of this scientific endeavor.

 

How did you become a NOAA scientist?

I earned a B.S. in Biology, a Ph.D. in Marine Studies, and completed several postdoctoral research appointments prior to getting hired by NOAA. The work that my colleagues and I do at the SWFSC is very interdisciplinary, and the variety of educational and research experiences that I’ve had prepared me become a researcher at NOAA.

What do you like best about your career?

I consider myself lucky to have a job with a variety of duties. Not only do I spend time in the office analyzing data, but I also get to spend time at sea conducting survey and collecting data. When I’m not using acoustics to study pelagic fishes that migrate between Canada and Mexico, I use remotely operated vehicles (ROVs, or undersea robots) to survey endangered abalone that live on rocky reefs in the deep sea. When I’m not at sea, I’m analyzing the data that we collected at sea to communicate the results of our work.

What advice would you give to a student who would like to follow a similar career path?

Increasingly, a research career in marine biology requires a graduate degree to allow for maximal career advancement. If possible, take some time after undergrad to work in a job related to your career goals. This will allow you to focus your interests before choosing a graduate program, or perhaps discover that you don’t actually like that career path (better to find out sooner than later!) or that you don’t require a graduate degree to do the job that really interests you (which will save you lots of time and money). Most importantly, choose a job that you look forward to going to every day.

 

Personal Log

It is dark out, but as I look down from high atop the ship through an open window from the bridge, the lights of Long Beach reflect on the placid expanse of ocean and I come to a great moment of reflection.  One of the busiest ports in the world is just off in the distance and I am looking for marine mammals in this suburban wilderness.  Beside the glow of humanity, nature continues on.

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Long Beach, California

I have been mostly helping with analyzing organisms that came up in the trawl at night, so my work schedule has moved to a 6 pm to 6 am.  I am struck by how hardworking, dedicated, and driven all members of this expedition are.  The crew, scientists, and NOAA Corps collaborate to continuously run surveys 24 hours a day, 7 days a week.  I am enjoying working at night now even though it took me a few days to get use to all of the adjustments in my schedule.  I particularly enjoy doing the marine mammal watch from the bridge.  It gives you this aerial point of view of all the action the NOAA Corps expertly navigating the ship and coordinating operations, the deck crew masterfully deploying nets and equipment, and the scientists excitedly exploring the organisms we collect.

Catch of the Day!

Haliphron atlanticusThis strange creature is a gelatinous octopus, whose body resembles a jellyfish, but when you look close, you see eyes looking at you!

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Haliphron atlanticus

Boreal Clubhook Squid (Onychoteuthis borealijaponicus)

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Boreal Clubhook Squid (Onychoteuthis borealijaponicus)

Ocean Sunfish (Mola mola) is the strangest fish I have ever seen! It is one of the heaviest bony fish, surprisingly from a diet high in jellyfish and salps. We caught a small and large sunfish.

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TAS Chris Tait holds an Ocean Sunfish (Mola mola)
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Measuring the ocean sunfish…
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Slide to Freedom!

Pacific Saury (Cololabis saira): This fast looking fish hunts plankton at night near the surface.

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Pacific Saury (Cololabis saira)

Curlfin Turbot (Pleuronichthys decurrens): This juvenile flatfish rises to the water surface at night to hunt zooplankton.  Flatfish have an eye that migrates from one side of their body to the other as they develop.

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Curlfin Turbot (Pleuronichthys decurrens)

Christopher Tait: Catch of the Day, March 21, 2017

NOAA Teacher at Sea

Christopher Tait

Aboard NOAA Ship Reuben Lasker

March 21 – April 7, 2017

Mission: Spring Coastal Pelagic Species Survey

Geographic Area of Cruise: Pacific Ocean from San Diego, CA to San Francisco, CA

Date: March 21, 2017

 

The Spring Coastal Pelagic Species Survey will be conducted in 2 legs between San Diego and Cape Mendocino, CA.  The ship will have a port call in San Francisco, CA between survey legs.

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Weather Data from the Bridge

Time 4:38 PDT,

Current Location: near San Clemente Island, Latitude 32.9 N Longitude -118.96 W

Air Temperature 15.3 oC  (59.5 oF)

Water Temperature 14.8 oC  (58.6 oF)

Wind Speed 13 kts

Barometric pressure 1021.15 hPa

Science and Technology Log

Trawling

                The ship trawls for schooling coastal pelagic fish from sundown to sunrise. This is because, under the protection of darkness, the zooplankton come up toward the surface to feed on phytoplankton and the planktivorous fish, in turn, follow the zooplankton.  Before the trawl net can be deployed, you have to go to the bridge, or the upper floor on the ship where all navigation and operations occur, to do a marine mammal watch for 30 minutes.  A marine mammal watch is a lookout for dolphins or other marine mammals that might be in the vicinity of the ship to avoid catching them in the trawl.  It is difficult to see any dolphins or sea lions in the inky blackness of the night ocean, but this is important to prevent incidental catch.  My first time up to the bridge at night was a surprise.  Walking up the lit stairs, you open the door to the bridge and the whole area is in darkness with just faint red lights so you can see.   After a while your eyes adjust and you make you way to the port or starboard sides of the bridge to start the watch. After you determine that the coast is clear, it is time for the deck crew to start deploying the net.  There is big overhead rigging with winches to help lift the net, ropes, chains, and buoys up to lower them down into the water.  We drag the net behind the boat for 45 minutes and then haul it in, hopefully full of fish!  When the fish are on the boat there is an elaborate process to gather information about the catch.

 Catch of the Day

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Pelagic Red Crab (Pleuroncodes planipes)
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Sorting buckets filled with Pelagic Red Crab

 

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Market Squid (Doryteuthis opalescens)

 

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Pyrosome (colonial tunicate)

 

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Greater Argonaut (Argonauta argo)

 

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King of the Salmon (Trachipterus altivelis)

 

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The Wet Lab where the catch is sorted.

Personal Log

3/21/17

Today is the first day at sea and everyone is busy setting up their labs and calibrating their equipment.  The goal of the research is to survey the distributions and abundances of the coastal pelagic fish stocks, their prey, and their biotic and abiotic environment in the California Current Ecosystem.  The Reuben Lasker is a state of the art research vessel with many specialized research laboratories.

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NOAA Ship Reuben Lasker

Coronado Bridge out my window.                                                      My State Room

3/22/17

I’m getting used to the 24 hour nature of the expedition. Everyone is assigned a 12 hour shift and I’m working 12 pm to 12 am.  During the day I am currently observing the methods and trying to assist where I can.  At night there are multiple trawls.  2 to 5 trawl are planned each night.  We caught a variety of different organisms, which are weighted, measured for length, and some saved for further studies such as genetic analysis.

 

3/23/17

Today I woke up to rough seas with waves about 8 feet, which made it very difficult to get moving!  As I moved around the ship everyone smiled because we know how each other are feeling.  The seas calmed later in the day and everyone felt much better.  Looking forward to doing our trawl tonight!

 

Did You Know?

The King of the Salmon got their name from the Makah people who believed the fish lead salmon to their spawning rivers.

The Argonaut looks like a nautilus, but they are really an octopus in which the female creates an egg case that wraps around the body.

 

Christopher Tait: “What Do They Do When Out to Sea?” March 18, 2017

NOAA Teacher at Sea

Christopher Tait

Aboard NOAA Ship Reuben Lasker

March 21 – April 7, 2017

Mission: Spring Coastal Pelagic Species Survey

Geographic Area: Pacific Ocean from San Diego, CA to San Francisco, CA

Date: Saturday, March 18, 2017

Weather Data

Current weather at home in Wingdale, New York is 39F and we just had 3 snow days in a week after 24 inches of snow.

Science and Technology Log

I will be joining the team aboard the Reuben Lasker to do the Spring Coastal Pelagic Species Survey.  The goal of the survey is to determine the distributions and abundances of the planktivorous (plankton eating) fish such as Pacific sardine (Sardinops sagax), Northern anchovy (Engraulis mordax), jack mackerel (Trachurus symmetricus), and the Pacific mackerel (Scomber japonicus) in the California Current between San Diego and Cape Mendocino, California.  This will be achieved using multi-frequency acoustic backscatter (sonar), sampling the fish with trawls, sampling spawned fish eggs in the water column, aerial surveys using UAS (unmanned aircraft system), sampling plankton, and measuring the abiotic environment such as temperature, salinity, oxygen levels.

Personal Log

TaitFebruary 1st I walked into work, opened up my email and saw a message from NOAA. I opened the message and saw “On behalf of the National Oceanic and Atmospheric Administration’s Teacher at Sea Selection Committee, we are pleased to inform you that you were selected to participate in NOAA’s Teacher at Sea (TAS) Program – 2017 Field Season!”  I couldn’t believe what an opportunity to learn from scientists and to enrich the classroom experience for my students!  I teach AP Environmental Science at New Fairfield High School, in Connecticut, Biology at Western Connecticut State University, and teach field research and study the community structure of fish in Candlewood Lake, CT with Project CLEAR supported by the Candlewood Lake Authority and EdAdvance.

Growing up my family would go to Cape Cod, Massachusetts to visit my uncle.  I remember always feeling this sense of awe about the ocean as my uncle would drive us around to his favorite beach spots, as I would learn about the amazing way the sea shaped the culture in this place.  I went back after finishing up graduate school in Earth and Planetary Science and writing countless papers using NOAA resources. I went to Woods Hole to see this hub of marine research and the NOAA ships sitting in their docks.  I remember wondering “what do they do when out to sea?”

A couple of weeks after I got my acceptance message and medical clearance, I got a research cruise placement on the Reuben Lasker out of San Diego, California!  With three weeks to prepare, I did everything I could to cover my bases at home, school and prepare for the experience of a lifetime.  I don’t think I have the words right now to express the gratitude I feel toward NOAA to have a program that allows a teacher to embed within their scientific community for a moment to experience what happens on those ships and bring my students behind the scenes of world class science.  I look forward to going to San Diego soon and meeting everyone from NOAA that I have been corresponding with!

 

 

Dana Chu: Introduction, May 12, 2016

NOAA Teacher at Sea
Dana Chu
(Almost) Aboard NOAA Ship Bell M. Shimada
May 13-22, 2016

Mission: Applied California Current Ecosystem Studies (ACCESS) is a working partnership between Cordell Bank National Marine Sanctuary, Greater Farallones National Marine Sanctuary, and Point Blue Conservation Science to survey the oceanographic conditions that influence and drive the availability of prey species (i.e., krill) to predators (i.e., marine mammals and sea birds).

Geographical area of cruise:  Greater Farallones, Cordell Bank, and Monterey Bay National Marine Sanctuaries (all off the coast of California)

Date:  Thursday, May 12, 2016

Personal Log

TAS Dana Chu profile picHello from Sacramento, California! My name is Dana Chu and I am a Math and Science teacher and an Education Specialist at Florin High School.   This year I also teach a class called Multiple Strategies for Academics and Transitions and support a Spanish 1 class.   Florin High School has a diverse population of over 1,400 students that speak nineteen different languages. After school, I serve as an advisor to the Florin High School Watershed Team which is composed of students from all grade levels.

TAS Dana Chu watershed team
Florin HS Watershed Team at the American River Clean Up, September 2015

I am a firm believer that providing students with the opportunity to gain first-hand experience in wildlife areas and natural habitats is the key to inspiring them to become responsible stewards of their environment, both land and water. Our school is within walking distance of several local creeks. The Cosumnes River Preserve and the Yolo Bypass Wildlife Area, both of which serve as protected habitat and crucial feeding ground for migrating birds, are a short drive away.   We are also fortunate to be close to the American River where anadromous fish such as the Chinook salmon and Steelhead trout spawn. Salmon fry raised in the classroom through the Fish in the Classroom Program from Nimbus Fish Hatchery will be released there. Throughout the year, some of our students participate on field trips to these locations.   I can’t wait to share my Teacher at Sea experience with all of my students, especially because the water from our local creek and rivers eventually all feed into the ocean.

TAS Dana Chu watching sandhill cranes
Students from the Watershed Team watch Sandhill Cranes fly in to roost for the evening. This field trip was made possible by the Save Our Sandhill Cranes non-profit organization.

I applied for the NOAA Teacher at Sea program because I am very interested in sea turtles, ocean plastic pollution, and birds. I love being out on water whenever the opportunity arises and taking photographs of nature. I also want to learn from and directly work with scientists in the field. Having never traveled in the ocean for an extended period of time before, this research trip is a unique and exciting learning opportunity and chance for me to engage in many first-hand experiences. With ocean plastic pollution being a serious issue, I wonder what we will come across during the days while I am at sea. I can’t wait to sail out on the NOAA Ship Bell Shimada and to assist with scientific research in the Pacific Ocean! For more specific details on this expedition, please check the links for the Ship and the Mission.

TAS Dana Chu kayaking
This is a photo of me kayaking in Costa Rica in 2014.

In the meantime, I am in the midst of preparing for my upcoming scientific adventure. I am packing the last items needed for this research trip.   At school, the 9th graders are finishing up the Water and Ocean unit with a marine animal research project. I hope to bring back relevant information to share. My 11th graders are working on their career transition portfolios and mock job interviews. I look forward to learning about the different types of scientific and marine careers available from the members of this research cruise so I can inform my students of other potential careers they might have not considered.

When you hear from me next, I will have sailed out of San Francisco, California and experienced my first days of working and living at sea. I look forward to seeing the various pelagic birds plus marine mammals and invertebrates within their natural habitat. I am so excited to be part of this expedition!