2011 – Page 43 – NOAA Teacher at Sea Blog

June 9, 2011April 28, 2021

Kathleen Brown: First Days at Sea, June 8-9, 2011

NOAA Teacher at Sea
Kathleen Brown
Aboard R/V Hugh R. Sharp
June 7 – 18, 2011

Mission: Sea Scallop Survey
Geographical area of cruise: North Atlantic
Dates: June 8-9, 2011

June 9, 2011

Weather Data from the Bridge
Time: 10:00 am
Winds 10 to 20 knots
Seas 3 to 4 feet

Science and Technology Log

This morning is the first day that I have awoken on board the ship. It will be my first twelve-hour shift. The scientists work either from noon until midnight or from midnight to noon. Kevin, the chief scientist, has assigned me to the day shift. I am very happy about this! We suit up in our foul weather gear. Those who have done this before explain to me that it is easiest to slip on the black rubber boots and rain pants like a firefighter who just got a call might do. We eagerly wait for the winch to pull the catch out of the water. The net drops everything out on the table. When we receive word from the engineer that all is clear, I don a hardhat, and hop up on the table with a white board that lists the station, strata and tow. My shipmate, La Shaun, snaps a photo record of the catch. We stand around the table and begin the inventory. We are looking for sea scallops and any we find go into a big orange basket. Other species that we separate out include: red hake, monkfish, haddock, skate, and ocean pout. We measure the length of the fish that we have separated. I imagine how the data might be used by scientists back on land to indicate the health of that portion of the ocean. As soon as we finish the haul and clean up, it is time to do it all over again. Every third catch we count the number of starfish and cancer crabs. I am excited to hold sponges, sea urchins, and hermit crabs. I am surprised to learn that the sand dollars are red.

Once all the sea life on the table has been sorted, it is time to head to the wet lab. There, the buckets of animals are counted and measured. Two persons work at each table measuring the fish. The fish is laid flat against the scale and one scientist uses a magnetic tool to capture the length electronically. During one catch, Aaron and I measured the length of 37 skate. I am impressed by the knowledge of the scientists who can easily tell the difference between a winter skate and a little skate. I hope by the end of the trip, I will be able to do so as quickly as they can.

Personal Log

I hardly notice the rocking of the ship while we are working. I think I may be starting to get my sea legs. On this first day there is very little time in between stations, and there is no real down time. I have learned how to shuck a sea scallop and seen the anatomy of the animal for the first time. I had been promised that I would get to work hard out on the open ocean and I am not disappointed.

Question of the Day Do you know the shape of the sea scallop shell? If you open the shell of a sea scallop you can immediately tell if it is a male or a female. How?

June 8, 2011

Personal Log

I reported to the Woods Hole dock at 7:30 in the morning. The day was bright and sunny, with temperatures in the 70s. The sight of the ship docked next to the NOAA building was so exciting. I climbed on board and introduced myself to Captain Jimmy who showed me right to the galley and offered me a cup of coffee. He was so welcoming! The ship had arrived in port at about 5:00 am and the crew and scientists were working to get everything ready to go by noon. I was shown my room, which is meant for four persons and has two sets of bunk beds. The room is so much bigger than it appeared in the photographs I saw! I chose a lower bunk and stowed my duffel bag underneath the bed in a cubby that was designed just for that. As more of those traveling on the journey arrived, I was interested to find that five of us have ties to Maine. We gathered to hear a briefing on the research that we will be supporting while on board the ship. Did you know that the American Sea Scallop is the most valuable fishery in the United States? Then we went off to lunch in the galley. The cook, Paul, served us an amazing lentil soup and sandwiches. The galley is full of snacks, a fridge with ice cream, and milk juice, coffee and tea, all of which are available day and night. As we were eating, I felt the ship start to move. We were told our first station is about eight hours away. (A station is a place where we collect a sample of the sea life.) Away we go!

Question of the Day What is the reason that Woods Hole became the location on Cape Cod for ocean research?

June 9, 2011April 28, 2021

Sue Zupko: WHNT News Interviews NOAA Teacher at Sea Sue Zupko

Sue Zupko is Interviewed by WHNT News. — Sue Zupko is Interviewed by

Sue Zupko was interviewed by WHNT News about her NOAA Teacher at Sea Cruise. Click the image above to view the video.

June 9, 2011April 28, 2021

Sue Zupko: 12 What’s in the Water?

NOAA Teacher at Sea: Sue Zupko
NOAA Ship: Pisces
Mission: Extreme Corals 2011; Study deep water coral and its habitat off the east coast of FL
Geographical Area of Cruise: SE United States from off Mayport, FL to St. Lucie, FL
Date: June 8, 2011
Time: 1900

Weather Data from the Bridge
Position: 25.3°N 79.6°W
Present weather: 3/8 Alto Cumulus
Visibility: 10 n.m.
Wind Direction: 065°true
Wind Speed: 10 kts
Surface Wave Height: 3 ft
Swell Wave Direction: 110°
Swell Wave Height: 3 ft
Surface Water Temperature: 28.4°
Barometric Pressure: 1013.2 mb
Water Depth: 363 m
Salinity: 36.28 PSU
Wet/Dry Bulb: 27.7/24.8

This blog runs in chronological order. If you haven’t been following, scroll down to “1 Introduction to my Voyage on the Pisces” and work your way back.

Take this quiz before reading this post.

Bucket hanging by rope in water — Straining bucket

Dr. Diego Figueroa and I went fishing over the side of the ship this evening with a straining bucket to try to catch zooplankton (animals which cannot swim against the current–free floating). We had no plankton net so we had to improvise.

Diego pouring a cup of water into a bucket from the bottom — Diego pours water into the bottom of the bucket

Diego, a zooplankton expert, got a plastic container like you’d use to store food in the fridge, and we headed to the lab with what we hoped would be a good catch. He got a cup of salt water from the special faucet in the ship’s science lab and poured it into the bottom of the bucket. As he poured the water, he had the plastic container at the top of the it to retrieve our catch.

Diego peering into a plastic food container with water — Diego examines our catch

We then examined the container to see what the naked eye could find.

Wow! Our first specimen was a shrimp. It’s huge. Well, huge in comparison to the other zooplankton. We still saw it best under the microscope. He left that in to container to pull out later and caught some copepods with an eye dropper.

White buglike creature, transluscent, with long antennae — Calanus copepod

Eureka! There were at least six Calanus copepods. Cope– is Greek for oar or handle and pod– means foot or limb. These are very common off the coast of Florida and about 80% of all the zooplankton on the planet are some type of copepod. He explained that the Calanus has five rows of legs that flap downward (like the doggie paddle that most of of use when learning to swim) in order to move around. The Calanus eats phytoplankton (algae), making it a primary consumer. It has five pairs of mouth parts. The hairy seta (the plural is called setae) act like a sieve when it eats. This is so interesting. The Calanus opens its mouth parts and gathers water molecules toward its body. Then, it pulls its mouth parts in and squeezes the water out. What’s left is a scrumptious meal of diatoms. The grazing copepod we watched was a female. Her tail is shaped differently than the male’s tail.

The shrimp is at least 20 times bigger than the Calanus. Diego hasn’t studied the shrimp like he has the copepods. That’s because the shrimp are one of the bigger zooplankton and large ones make up only about 5% of all zooplankton. He says that there are more copepods in the world than all the insects combined. That makes sense since the earth’s surface is 71% water.

Jellyfish with tentacles spread against a black background with white particles near — Jellyfish in snow

When the ROV was flying through the ocean, we always saw snow in the water. I used to scuba dive a lot and I never really noticed the snow. If it was deep, they weren’t there. Andy David explained that we see them so well since we’re shining light on them. These are mostly zooplankton in the water. In addition, there is a bunch of decaying organic matter called detritus flying along.

Curled up bee looking creature — Hyperiid

Further examination of the water yielded a Microsetella rosea, a hyperiid, and a Chaetognath (arrow worm). The Microsetella is a detritis-eating filter feeder, but it is only about 1/5 the size of the Calanus. Well, with micro in its name, small had to figure into it somehow. Since it’s small, it eats smaller things.

Clear ghost-like arrow-shaped creature surrounded by lines of white — Arrow worm

The arrow worm is like something from a horror movie because it attacks its prey viciously (it’s a carnivore and is a voracious predator). I asked what all the other floating bits were in the water. Detritus. It’s the snow we kept seeing.

White shrimp with one claw showing viewed through microscope — Shrimp

Diego has a special camera which attaches to the microscope. We would examine the zooplankton in the petri dish and then he would take off the microscope eyepiece and insert his camera. Then, through the viewfinder, he would try to find the zooplankton resting somewhere. Apparently, they don’t rest much, but he still got photographs.

Diego searches for our catch under the microscope while Sue looks on — Diego hunting for zooplankton

I really enjoyed this mini lab. Diego taught me things about plankton in general and I now better understand this amazing world of particulates in the ocean a bit better. Jana and I had gone on deck last night to see what it was like in the pitch black. We discovered it isn’t totally dark, though your eyes do have to adjust. The moon kept peeking from between clouds off the starboard (right) side and lights shone from portholes below deck. These lights reflected off the waves and were so fascinating to watch. I’ve only had a beachside view of the ocean at night so this was a real treat. Jana and I watched for bioluminescence in the water, a sign of some plankton. We found little sparkles of green in the wave and hypothesized these were zooplankton. After explaining what we had seen to Diego, he confirmed that these were zooplankton rather than phytoplankton. Zooplankton have little sparkles in turning water while phytoplankton will cover a large area and just glow. Too interesting.

Special thanks to Diego for sharing his knowledge with me after a long day and to Jana for helping get some pictures of this.

And the answer to the quiz above….Copepods. They are so small you don’t notice them, but there are almost as many copepods as there are grains of sand on the beach. It’s hard to fathom that many creatures swimming around. Diego said that they eat the phytoplankton so fast that often there are more zooplankton than phytoplankton.

June 9, 2011April 28, 2021

Sue Zupko: 11 Belts and Suspenders

Weather Data from the Bridge
Position: 27.3°N 79.6°W
Present weather: 4/8 Alto cumulus
Visibility: 10 n.m.
Wind Direction: 082°
Wind Speed: 4 kts
Surfacel Wave Height: 2-3 ft
Swell Wave Direction: 100° true
Swell Wave Height: 2-3 ft
Surface Water Temperature: 27.1°
Barometric Pressure: 1014.5mb
Water Depth: 80m
Salinity: 36.56 PSU
Wet/Dry Bulb: 27.2/24

This blog runs in chronological order. If you haven’t been following, scroll down to “1 Introduction to my Voyage on the Pisces” and work your way back.

The first ROV we used on the Pisces for our Extreme Corals 2011 expedition is a custom designed craft called The Arc. The crew, led by Dr. John Butler at the Southwest Fisheries Science Center, has been developing The Arc since 2007 and launched it in January of 2011. The Arc is ideal for monitoring fisheries, improving species identification, and developing new methods of studying fisheries. It can withstand pressures and dive to 1000 meters (actually it dives to 600 meters since that is how long the tether is). When on land, it weights 264 kg (580 pounds). It has a rectangular prism shape with a length of 190 cm (75 in), width of 117 cm (46 in), and a height of 84 cm (33 in). Just for fun, do this math quiz.

The pilot sits on the ship and tells The Arc what to do. It’s like playing a video game. The pilot and his navigator coordinate movements, watching the computer screen with the ship’s and The Arc’s positions clearly showing. The navigator is in constant communication with the officers on the bridge of the Pisces using a walkie-talkie to relay messages and information between the ship’s pilot and the ROV’s pilot. The bridge also has a navigation screen to monitor the position of the ship relative to the ROV. The fishermen on the deck running the winch also have walkie-talkies so they can be told when to adjust the length of the cable to the ROV. Communication is very important.

Front of ROV with headlights peering down. Lots of black tubing and a yellow rectagle. — Front of ROV

The ROV is pretty neat. It has headlights similar to robots from old Sci-Fi movies so it appears creature-like, but without the spindly legs. Bright lights are needed because that’s about the only light that is available at great depths. There are four LED lights with 2600 lumens each. A 100 watt incandescent light bulb in your lamp has about 1750 lumens. How many lumens total does the ROV produce? Again, doing the math it would be 2600×4=10,400 lumens for the ROV. This is roughly twice as much as your four lightbulbs at home. Looking at the pictures from the bottom of the sea where it is normally dark and the tiny amount of light reaching the bottom makes everything look dark blue or black (see my earlier post on light in the ocean) we can see the colors almost as they would appear in a tidal pool.

The ROV has many instruments to measure data and take photographs of what it “sees.” It has a CTD ( measures Conductivity, from which we calculate salinity, Temperature, and Depth) as well as an oxygen sensor. The best part is the laser beam system which measures things like a ruler. With the help of the high definition camera, we were able to see the fish and invertebrates we were studying. Using the laser beams, we could not only measure their size, but how far away they were.

Crab on sandy bottom with 4 red laser beam lights and one green — Cancer borealis

Note the red dots parallel to each other. The top two red ones are always 20 cm apart and in this picture the two on the bottom are 40 cm apart. The green light helps measure the distance to the crab. Apparently this crab is about 20 cm across. The lasers are fabulous for helping to keep things in perspective.

Yellow hose with some pink covering — ROV Tether

Dave Murfin, one of the ROV crew, was commenting to me about this picture after reading my blog. He said the pink stuff was the foam jacket used for floatation cut off from an old ROV cable, and he thought it looked ugly. However, given a new perspective of it, he thinks it looks cool. The pink foam helps protect the tether on deck and if it scrapes across rocks on the ocean floor. These ROV engineers added the large floats for the last 40 meters of the tether to keep it off the bottom and avoid becoming tangled in the coral and rocky habitats we are studying.

Spool with yellow tether — Spool of ROV tether

The tether for The Arc is wrapped on a spool for easy retrieval and transport. It is 610 meters long and has three fiber optic cables in the center surrounded by insulation. Around that are copper wires to conduct power from the ship, which is why they need a cable. If it ran on a battery, like a submarine, it could be on the bottom alone and the scientists would have to wait for it to return to see what data was stored inside. By using a tether, the scientists have much more control and can move the ship to study something of interest. Although technology is rapidly advancing, it is not quite possible yet to create a vehicle which would do everything the scientists need. Therefore, we continue to use the tether with the ROVs.

So, what do belts and suspenders have to do with the ROV? Well, there is an old saying that you don’t rely on just one thing; you always have a backup. If the belt on your pants doesn’t work, you have the suspenders to hold them up. The Arc is a new system. It is the belt and the system with 700+ dives to its credit is the spare (suspenders), just in case. Technology. It can be fabulous, but very frustrating when it gives you problems. As a teacher, I have to plan for technology to be down as well. I can’t have my whole lesson plan revolving around technology. What if the internet is down that day? Well, the students could get pretty wild without a back up plan. As my mom used to say, “Don’t put all your eggs in one basket.” What if the basket dropped? You are out of luck.

As I mentioned before in my blog, these men and women are dedicated professionals. They have lots of experience with this equipment and know the unexpected can happen. If you forecast about the unexpected, you can be prepared. I have always known that duct tape is a useful tool. Bungee cords are useful. Redundant cables, nuts, bolts, and spare parts are all on board. Having the spare ROV was just good planning and good sense. We have still been able to work our mission with some modifications. Bravo to this bunch for continuing to make things happen despite the unexpected happening. Because of them, we have some wonderful video and photographs to see what is happening on the coral reefs we have been studying.

Scott searching for cables in a box — Scott Mau searches for necessary cables

And the answer to the poll at the beginning of this post is…less than 2 knots. They really prefer currents less than 0.5 knots. This week we’ve launched in currents which were 3.5 knots. Sometimes it caused problems, sometimes not. Here are some pictures from the bottom.

Purple sponge which looks like a jaw opening from the bottom. — Purple barrel sponge

Pinkish purple sea fan on bottom — Sea Fan Octocoral

Sea floor with white whiplike strands — Black coral "forest", Stichopathes

Everyone keeps asking me if I have driven the ROV. I asked the ROV crew about it and they all just smiled. Although it looks like a video game, the ROV is not a toy and not to be given to a novice to control. Considering I can’t get down the stream on Wii Fit without crashing into the side of the stream, they sure don’t want me at the helm of this incredible piece of technology. With the ROV, there is no opportunity for a second chance if you crash and burn. Therefore, I’ll leave the driving to them.

Men watching computer screens in control room piloting the ROV — Teamwork. Kevin is piloting the ROV with the help of John and Dave.

June 8, 2011April 28, 2021

Sue Zupko: 10 Steamin’ an’ a Beamin’

NOAA Teacher at Sea: Sue Zupko
NOAA Ship: Pisces
Mission: Extreme Corals 2011; explore the ocean bottom to map and study health of corals and their habitat
Geographical Area of Cruise: SE United States deep water from off Mayport, FL to St. Lucie, FL
Date: June 4, 2011

Weather Data from the Bridge
Position: 29.1° N 80.1°W
Time: 11:00 EDT
Wind Speed: calm
Visibility: 10 n.m.
Surface Water Temperature: 27.6°C
Air Temperature:27.6°C
Relative Humidity: 72%
Barometric Pressure:1018.4 mb
Water Depth: 85.81 m
Salinity: 36.55 PSU

When the strong current from the Gulf Stream stretched the tether of the ROV and broke one of the three fiber optic cables inside, it was time to come up with a new plan. What do you do in the middle of the ocean if the main gear is not functioning? Plan B. Well, Plan B was using the spare fiber optic in the tether. The spare one then broke as a result of being rubbed, most likely, by the sharp end of the original broken fiber during the next dive. Now we had to go to Plan C . Fortunately the ROV crew is experienced, and, like Boy Scouts, were prepared. They brought a spare ROV and tethers from their lab in La Jolla (pronounced La Hoya), CA just in case. The ship is running the sonar gear back and forth over the area we plan to dive tomorrow, mapping out the bottom, looking for coral mounds. This process is called “mowing the lawn” since you run the beams back and forth to get complete coverage of the bottom, and it looks like the lines on the lawn left by the mower. Think of the beam as having the shape of a flashlight’s beam shining on the floor. Another interesting feature is that the acoustic beam can also read what fish are present. It needs to have a swim bladder for the signal to bounce back. When it does, based on the sound, an experienced acoustician can read what fish the signal represents. Sharks don’t have a swim bladder like most fish do so their signals are a bit more difficult to read.

I was just up on the bridge and it seems we hit “pay dirt” (like gold miners). The captain had been explaining to me a symbol shown on the Electronic Chart Display System (ECS). It looks like a graphic math problem showing the intersection of lines, in this case one line running on a 110° angle with three lines parallel to each other intersecting it. The line in the middle is a bit longer than the other two. I asked how he knew what that symbol meant. Apparently, there is a book for everything on the bridge. He whipped out his handy-dandy book entitled, Chart No. 1. It is a key to reading nautical charts (maps). He searched for the correct page with bottom obstructions of all types and showed me that symbol and what it means. Whenever I have a question, the bridge crew whips out a book of some type to let me see the answer. It’s really interesting. The Pisces is a really modern ship with the latest electronic navigation and scientific features. The other day I asked about navigating without power. There is a book for that. Bowditch American Practical Navigator has everything you need to know about crossing the ocean without electronics. As it says on my classroom door, “Reading makes life a lot easier.” Turns out that symbol is a shipwreck.

Laura sitting in front of computer screen — Laura Kracker looks at maps

But I digress. Back to the pay dirt (we struck gold). Laura Kracker, our geographer started getting excited. “Look at this! Look at this! Write down these coordinates.”

She went running back to the acoustics lab (where they use sound echos to map the ocean floor and the presence of fish) to mark the location along the transect (lines we’re running) because we apparently were over coral mounds. Using information gathered by others in years past as a guide, they were mowing the lawn with the sonar to find interesting habitat to study with the ROV. As the ship went back and forth along the planned transect to develop a much better map than existed, Laura would radio the bridge about any changes to the courseto pinpoint the best areas for us to study over the next couple of days.

ROV crew working on transferring gear from one ROV to the other on deck — ROV crew swtiches gear from one ROV to the other

Everyone was very excited. So, although the ROV had to be switched out, which took a lot of work, we made good use of the time on the ship. After a whole day of mapping, it’s now late at night and the map looks gorgeous. This is important work and many cruises are devoted entirely to mapping. Andy David, our lead scientist, says this acoustic mapping is useful to many people and will allow more precise coral surveys for years to come.