reef fish survey – Page 5 – NOAA Teacher at Sea Blog

May 31, 2013August 11, 2021

Elizabeth Nyman: First Day at Sea, May 28, 2013

NOAA Teacher at Sea
Elizabeth Nyman
Aboard NOAA Ship Pisces
May 28 – June 7, 2013

Mission: SEAMAP Reef Fish Survey
Geographical Area of Cruise: Gulf of Mexico
Date: May 28, 2013

Weather Data:
Surface Water Temperature: 23.84 degrees Celsius
Air Temperature: 23.90 degrees Celsius
Barometric Pressure: 1017.8 mb

Science and Technology Log

So I’ve known for about two months or so that I was going to be taking part in one leg of an ongoing reef fishery survey. I even had an idea that it involved surveying fish that lived on reefs. But after our first full day at sea, and many hours of helping take part in the scientific work, I now begin to understand how exactly one surveys reef fish.

There’s a couple of different things that the scientific crew is doing to observe and understand the reef fish population. First, there is an ongoing video recording process throughout the day, from just after sunrise to just before sunset. For this, the ship and scientific crew lower a large, 600 pound camera array off of the starboard side of the ship. The cameras will go and sit on the sea floor and record all the fish that pass in front of it, for a total recording time of 25 minutes. After this time has passed, plus a little extra time, the cameras are pulled back up, the recordings are downloaded, we move to a different spot and the process begins again.

Underwater Camera Array — Hauling the camera array back on deck. I said it was big, didn’t I?

The video is reviewed the next day. Since this is our first day at sea, I didn’t get much of a chance to see any reef fishery footage, though I’m told that’s on the agenda for tomorrow. What I spent most of my time doing was helping out with another part of the survey process, something called the bandit reels. They’re used for good old-fashioned hook and line fishing.

There are three bandit reels on the Pisces, and each one can hold 10 fishing hooks. Each reel has different sized hooks, and the hook sizes are changed every drop. The line has a weight at the bottom to bring the hooks down to the sea floor, which have been baited with mackerel bits. After five minutes, the line is reeled back in, and you have fish…or you don’t.

My first drop, which had the biggest hooks, had a whole bunch of nothing. As did everyone else’s, though, so it wasn’t a testament to my poor fishing skills.

The second drop, however, was luckier.

A spotted moray eel! I was excited, anyway. But morays aren’t one of the fish that we’re looking for out here, so it wasn’t a particularly useful catch.

Our third drop was the most successful. Our bandit reel hauled in seven fish, one of whom got away (the biggest one, of course, one the size of a killer whale…yeah, just kidding!). The other six were brought into the wet lab, where they joined the other fish caught on that drop and would be measured and dissected.

Fish on a measuring board. — We caught a big one!

The fish are measured three different ways. The first, by total length, examines exactly that, the total length of the fish from the nose all the way to the tip of the tail. The second measure goes from the nose to the fork in the tail, so it’s a shorter distance. The third, standard length, goes from the nose to just before the tail fin, where the fish’s vertebrae end, and is the shortest of all. They’re also weighed at this time as well.

After that, we start cutting into the fish. Two things are of interest here: the ear bone and the sex organs. The ear bones are removed from each fish, because they can be tested to determine the age of the fish. The sex organs will reveal gender, obviously, but also are examined to see how fertile each specimen is. We don’t do this kind of analysis on the ship, however. The ear bones and sex organs are sent back to the NOAA lab in Panama City, Florida, where they will conduct all those tests.

Personal Log

The best part of my first day at sea was definitely the ship safety drills.

Wait, what?

No, seriously. The absolute highlight of this one was my chance to try on what’s known as the Gumby suit. The Gumby suit is a nickname for a immersion survival suit – if we have to abandon ship and float around in the water, the suit will protect us from the elements. Now, we’re down here in the Gulf of Mexico, so that seems a little crazy, but think about how you’d feel if you were stuck in the water for hours on end. In really cold waters, that suit may be the difference between life and death.

The drills are important, and they’re mandated for a reason. In an emergency, all of this stuff can save lives.

Why do I like the drills so much? We’re required to have safety drills by law, and so as someone who studies and teaches international law, I always enjoy taking part in these things. It’s a chance to see the stuff in action that I talk about in class. And that’s kind of what this program is all about – the chance to experience things firsthand as opposed to just having to read about them.

Did You Know?

You’re supposed to be able to put on a Gumby suit in under a minute. They wouldn’t do much good if they took too long to put on.

July 10, 2012August 11, 2021

Carmen Andrews: News from Somewhere in the Atlantic Ocean off the Coast of Georgia, July 9, 2012

NOAA Teacher at Sea
Carmen Andrews
Aboard R/V Savannah
July 7 – July 18, 2012

Mission: SEFIS Reef Fish Survey
Geographical Location: Atlantic Ocean, off the coasts of Georgia and Florida
Date: July 9, 2012

Location Data:
Latitude: 30 ° 54.55’ N
Longitude: 80 ° 37.36’ W

Weather Data:
Air Temperature: 28.5°C (approx. 84°F)
Wind Speed: 6 knots
Wind Direction: from SW
Surface Water Temperature: 28.16 °C (approx. 83°F)
Weather conditions: Sunny and fair

Science and Technology Log

Purpose of the research cruise and background information

The Research Vessel, or R/V Savannah is currently sampling several species of fish that live in the bottom or benthic habitats off the coasts of Georgia and Florida.

Reef fish study area — The coastal zone of Georgia and Florida and the Atlantic Ocean area where the R/V Savannah is currently surveying reef fish

These important reef habitats are a series of rocky areas that are referred to as hard bottom or “live” bottom areas by marine scientists. The reef area includes ledges or cliff-like formations that occur near the continental shelf of the southeast coast. They are called ‘reefs’ because of their topography – not because they are formed by large coral colonies, as in warmer waters. These zones can be envisioned as strings of rocky undersea islands that lie between softer areas of silt and sand. They are highly productive areas that are rich in marine organism diversity. Several species of snapper, grouper, sea bass, porgy, as well as moray eels, and other fish inhabit this hard benthic habitat.

Reef fish — Hard bottom of reef habitat, showing benthic fish — black sea bass is on left and gray trigger fish is on right side of image.

It is also home to many invertebrate species of coral, bryozoans, echinoderms, arthropods and mollusks.

Bottom organisms pulled up with fish traps — Bottom-dwelling organisms, pulled up with fish traps deployed in the reef zone.

The rock material, or substrate of the sea bottom, is thought to be limestone — similar to that found in most of Florida. There are places where ancient rivers once flowed to a more distant ocean shoreline than now. Scientists think that these are remnants of old coastlines that are now submerged beneath the Atlantic Ocean. Researchers still have much to discover about this little known ocean region that lies so close to where so many people live and work.

The biological research of this voyage focuses primarily on two kinds of popular fish – snappers and groupers. These are generic terms for a number of species that are sought by commercial and sports fishing interests. The two varieties of fish are so popular with consumers who purchase them in supermarkets, fish markets and restaurants, that their populations may be in decline.

Red snapper close up — Red snapper in its reef habitat

At this time, all red snapper fishing is banned in the southeast Atlantic fishery because the fish populations, also known as stocks, are so low.

How the fish are collected for study

The fish are caught in wire chevron traps. Six baited traps are dropped, one by one from the stern of the R/V Savannah. The traps are laid in water depths ranging from 40 to 250 feet in designated reef areas. Each trap is equipped with a high definition underwater video camera to monitor and record the comings and goings of fish around and within the traps, as well as a second camera that records the adjacent habitat.

Chevron fish trap — Fish swimming in and out of a chevron fish trap

I will provide the details of the fish trapping and data capture methods in a future blog.

Who is doing the research?

When not at sea, the R/V Savannah is docked at the Skidaway Institute of Oceanography (SKIO)on Skidaway Island, south of Savannah, Georgia. The institute is part of the University of Georgia. The SKIO complex is also the headquarters of the Gray’s Reef National Marine Sanctuary. The facility there has a small aquarium and the regional NOAA office.

The fisheries research being done on this cruise is a cooperative effort between federal and state agencies. The reef fish survey is one of several that are done annually as part of SEFIS, the Southeast Fisheries Independent Survey. The people who work to conduct this survey are located in Beaufort, North Carolina. SEFIS is part of NOAA.

The other members of the research team are from MARMAP, the Marine Research Monitoring Assessment and Prediction agency, which is part of the South Carolina Department of Natural Resources . This team is from Charleston, South Carolina.

Carmen, suited up to retrieve fish from traps — Mrs. Andrews, on deck near the stern of the R/V Savannah, getting ready to unload fish traps

NOAA also allows “civilians” like me — one of the Teachers at Sea– as well as university undergraduate and graduate students to actively participate in this research.

June 25, 2012August 11, 2021

Lesley Urasky: Do You See What the Pisces “Hears”?, June 22, 2012

NOAA Teacher at Sea
Lesley Urasky
Aboard the NOAA ship Pisces
June 16 – June 29, 2012

Mission: SEAMAP Caribbean Reef Fish Survey
Geographical area of cruise: St. Croix, U.S. Virgin Islands
Date: June 22, 2012

Location:
Latitude: 18.5472
Longitude: -65.1325

Weather Data from the Bridge:

Air Temperature: 28.6°C (83.5°F)
Wind Speed: 9 knots (10.5 mph), Beaufort scale: 3
Wind Direction: from SE
Relative Humidity: 77%
Barometric Pressure: 1,014.80 mb
Surface Water Temperature: 28.1°C (82.6°F)

Science and Technology Log

Another aspect (much more technical) of the scientific research conducted on this cruise is the collection of acoustic data. This field is continually evolving as the detection resolution improves allowing scientists to more precisely identify fish. This has been used with more success in fisheries farther north because the schools of fish are more likely to be monospecific (a single species). However, the technique still needs improvement in warmer waters where the fish assemblages tend to be multi-specific (having a much greater variety of fish).

General idea behind an acoustic sounder being used to detect fish. (Source: www.biosonicinc.com)

This field of study is called Hydroacoustics (hydro- means water, and acoustics refers to sound). It is the science of how sound moves through water. Leonardo da Vinci noticed how sound travels through water in 1490. He noticed that, “If you cause your ship to stop and place the head of a long tube in the water and place the outer extremity to your ear, you will hear ships at a great distance from you.” (Urick, Robert J. Principles of Underwater Sound, 3rd Edition. New York. McGraw-Hill, 1983.) World War I helped promote innovation in the field, especially with the need for anti-submarine detection devices (Wood, A. B., From the Board of Invention and Research to the Royal Naval Scientific Service, Journal of the Royal Naval Scientific Service Vol 20, No 4, pp 1-100 (185-284)).

Hydroacoustic instruments utilize SOund Navigation and Ranging, more commonly referred to as SONAR. The ship Pisces is equipped with a system located on the center board; this is a flat structure that can be raised/lowered through the water column beneath the center of the ship.

Line drawing of the Pisces showing the location of the center board. — Line drawing of the NOAA ship Pisces showing the location of the center board.

The system used is a sonar beam that is split into quadrants. This instrument is used to assist in determining fish abundance and distribution. The premise is relatively simple: an echo sounder transmits a pulse of energy waves (sound), when the pulse strikes an object, it is reflected (bounced) back to the transducer. The echo sounder is then processed and sent to a video display. This is the same general process behind the recreationally available fishfinder.

Acoustic beam split into quadrants (Source: http://www.htisonar.com

A short burst of energy is focused into a narrow beam. When this beam encounters an object such as a fish, a school of fish, plankton, or other object, some of the energy bounces back up through the water to the transducer. It is the detection of these reflections that allow scientists to determine location, size, and abundance of fish. These reflections show up on our video monitor. These measurements are combined with groundtruthed data (for example, fish collected in the field, camera images).

One of the difficulties in data interpretation is that often, the signals that appear on the computer monitor have false readings. This is a result of the sound wave bouncing multiple times. It travels to the bottom from the transducer, strikes an object, returns to the ship, bounces off the ship back toward the bottom, strikes another object, and is detected yet again.

Real-time annotated echogram at sampling site.

The Pisces is actually home to one of six multi-beam acoustic instruments in the world. Of the six in existence, NOAA has five of them. The benefit of running a multi-beam instrument is that each beam can be set to measure a different frequency (kHz), thus enabling detection of many more features (different species of fish, etc.)

Scientific multibeam echo sounder (Source: www. simrad.com)

Personal Log

Last night the crew of the Pisces carried out a task that they don’t normally perform. The Pisces was created for fisheries research projects – it focuses on collecting fish samples either by bandit reel, longline, or trawling. This particular operation was to deploy the anchor for a buoy that will be attached at a later date. When the buoy is ready to be attached, another vessel will bring it out to the site and divers will go down to the anchor to make the final attachment.

The anchor consists of a huge rebar-reinforced concrete block with a very long chain that has marker floats attached at the end. Logistically, this took some planning; the A-frame had to be raised and the anchor lifted with the Gilson winch with a 1″ spectra line (has an enormous tensile strength). The gate to the ship’s ramp was lowered and the A-frame (or as the deck hands call it, the “Tuna Tower”) repositioned so the anchor was hanging over the water. The rope holding the anchor, chain, and float was cut through, and the anchor plunged to the ocean bottom. Again, the crew made the operation go smoothly and demonstrated their ability to complete unexpectedly assigned tasks.

Today was a slow fishing day – no fish at all. Without any fish to “work up” (collect samples from), the day goes more slowly and we have more down time. With the extra time, I had a chance to interview Kevin Rademacher, the Chief Scientist on the cruise.

LU: What is your official job title and what are your job duties?

KR: I’m a Research Fisheries Biologist. I work for the Reef Fish Unit at the NOAA Fisheries Lab in Pascagoula, MS. I am the Senior Tape Reader/Reviewer, in charge of the readers that analyze the video data we collect from Reef Fish Surveys. I also help plan, organize, and run the surveys. Additionally, I participate in trawl surveys and anything else the lab needs done.

LU: When did you first become interested in the ocean and marine sciences?

KR: I guess that would have been when I was really young. There is a photo from the Panama City, Florida newspaper, two weeks after I was born with my parents pulling me in a homemade wagon along the beach! I knew in junior high school that I wanted to be a cross between Jacques Cousteau and Marlin Perkins of Mutual of Omaha’s Wild Kingdom.

LU: It’s such a broad field; how did you narrow your focus down to what you’re currently doing?

KR: I got lucky and kind of fell into reading underwater videos at the initial stages of the project and fell in love with being the proverbial “fly on the wall”! It has allowed me to see the fish in their natural habitat, different color phases, behavior, etc.

LU: If you were to go into another area of ocean research, what would it be?

KR: Marine Mammal Studies. After college I trained dolphins and sea lions and put on shows with them for a local Oceanarium on the Mississippi Gulf Coast.

LU: What is the biggest challenge in your job?

KR: Communicating with people and writing papers.

Ariane and Kevin — Ariane Frappier and Kevin Rademacher reviewing a dichotomous key in order to determine the species of a fish we caught.

LU: What do you think is the biggest issue of contention in your field?

KR: The impression that commercial fishermen have regarding the work we do to regulate the fisheries they work in.

LU: What are some effects of climate change that you’ve witnessed during your career in fisheries research?

KR: The decline of coral reefs and overfishing of some species.

LU: In what areas of marine science do you foresee a lot of career paths and job opportunities?

KR: Ecosystem management and data modelers. There has also been a decline in taxonomists over the past few decades.

LU: How would you explain your work to a layperson?

KR: I use underwater cameras to help assess populations of reef fish, especially snappers and groupers. The data collected is used to manage those fisheries.

LU: If a high school student wanted to go into your field of study/marine science in general, what kinds of courses would you recommend they take?

KR: Math, Biology, Chemistry, and any other science courses available.

LU: Do you recommend students interested in your field pursue original research as high school students or undergraduates? If so, what kind?

KR: Most definitely! Whatever they are interested in would be beneficial.

Well, only two more days left with the scientists before we pull into San Juan, Puerto Rico. We have 17 more daytime sites to sample and then this survey will be over. The scientific crew will be flying home on the 25th, and once home, their work will really begin. Back in the lab, they will be analyzing the data and reviewing the video. Some of them will be going back out on other cruises. Kevin Rademacher will be going out on another reef fish survey in the eastern Gulf of Mexico. It is currently delayed because of the potential formation of tropical storm Debby. Joey Salisbury has a couple more; he will be going on a longline cruise and then another reef fish survey, both of which will be in the Gulf of Mexico. Arian Frappier will be heading off to begin a masters program in marine systems and coastal studies at Texas A&M Corpus Christi.

After a day’s shore leave in San Juan, I’ll continue on to Mayport on the Pisces. During this time, I’ll focus on the crew members and their jobs. The cruise will definitely take on a different feel at this point, but it will give me an opportunity to explore other ocean related careers.

June 21, 2012August 11, 2021

Carmen Andrews: Introduction June 20, 2012

NOAA Teacher at Sea
Carmen Andrews
Aboard R/V Savannah
July 6 – 18, 2012

Hello!

Happy Summer Solstice Day! I am Carmen Andrews. I work as a science specialist at Six to Six Interdistrict Magnet School in Bridgeport, CT. I have just finished my 5th year at this school. I create science curriculum for grades pre-K through 8. I also teach many classes to help teachers improve their understanding of science concepts and inquiry methods.

Six to Six Magnet School — Six to Six Interdistrict Magnet School, Bridgeport, CT

Our school has a unique academic program that incorporates partnerships with the Maritime Aquarium in Norwalk, CT and the Eli Whitney Museum in Hamden, CT. Our students visit many other places, including the Yale Peabody Museum and Yale Leitner Family Planetarium and Observatory in New Haven. We also allow our students to remotely operate the Gold Apple Valley Radio Telescope in California. My favorite places to teach classes are the unspoiled outdoor sites in Connecticut where we take our students for field studies.

4th Grade Marsh Field Study — 4th Graders on a Marsh Field Study

Kindergarteners Investigating Invertebrates — Kindergarteners Investigating Marine Invertebrates

Sixth Graders — 6th Graders Counting Intertidal Organisms Using a Quadrat

I love research!

One of my passions as an educator is creating opportunities for students to investigate real world problems using science inquiry. This year my 6th and 7th graders took on a big environmental research project. They were asked to research bioremediation and to develop a creative solution to a major problem in their community — toxic oil spills. The work was funded by a NSTA/Toyota Tapestry Grant award, which enabled us to find out about blue and gray oyster mushrooms’ ability to metabolize oil spills in soil. Our project is called Going Green in Brownfields: A New Diet for Mushrooms. You can see our blog here: mushroomdiet.info

Mushroom Harvest — A 7th Grader Massing Blue Oyster Mushrooms Grown in Motor Oil

My Teacher at Sea Adventure

The NOAA Teacher at Sea program was created to provide teachers with experiences in science research. We share our knowledge with our school communities using blogs, teaching and writing articles when we return from our Teacher at Sea assignment. I am very excited to learn about the work of NOAA in monitoring fisheries in U.S. coastal waters. I am eager to share this scientific research with students. I also want to expose students to the variety of maritime and marine science careers that they can consider pursuing in later life.

I will be departing on the R/V Savannah in about 2 weeks to participate in a reef fish survey. The next time I write, I will most likely be somewhere near Skidaway Island, GA. My target audience for my blogs while I am at sea, are students, colleagues and friends of all ages. Please feel free to post your comments and questions about this important science research.

June 1, 2012March 12, 2021

Kristy Weaver: What’s a Reef Fish Survey? May 30, 2012

NOAA Teacher at Sea
Kristy Weaver
Aboard The R/V Savannah
May 23 – June 1, 2012

Mission: Reef Fish Survey
Location: 44 miles off the coast of Jacksonville, FL
Date: May 30, 2012

Current Weather: 80 degrees and sunny

Science and Technology Log

Today is our last full day at sea. We have caught about 2,000 fish in the past week! A lot of them were thrown back into the water because we only need to keep a fraction of them for the reef fish survey. The fish that we keep are studied by the scientists for a few reasons.

First, every fish we catch is measured and weighed.

TAS 021 — David, a fisheries biologist, measures every fish that we catch

Then we have a sheet that tells us which fish we “keep” and which fish we “toss” back into the ocean.

TAS 022 — Stephen writes down the length of every fish as David calls out the numbers

TAS 024 — After Stephen writes down the length he uses this paper to tell David to keep the fish or toss it back into the ocean

TAS 032 — Every fish that we keep gets its own ID number and envelope.

After it gets dark we stop fishing and go inside to the lab to collect information about the fish we caught that day. Every single fish that we keep gets its own ID number, and gets weighed and measured again. We write everything down. These notes are data.

TAS 026 — Here I am writing down the length and weight of each fish as Stephen weighs and measures them

When you make observations using your senses you are collecting data too! Can you think of a time you collected data or made an observation like a scientist?

After we record the length and weight I give Stephen the envelope and the other scientists come get the fish.

TAS 031 — Passing Stephen the envelope for the fish he just measured and weighed

TAS 025 — Scientists Jennifer and David take parts of the fish that they will study under a microscope later

Once all of the information is brought back to the scientists at the lab, they look at different parts of the fish using a microscope. This will tell the scientists three main things…

1) Is the fish a male (boy) or a female (girl)?

2)How old is the fish?

And

3) Are these fish from all different families, or are they all related to each other?

Once the scientists answer these questions, they can decide if its okay for people to go fishing for certain types of fish, or if too many fish are being taken out of the ocean and need to be protected. Right now fisheries are not allowed to take Red Snapper out of the Atlantic Ocean. That fish is a very important part of our survey.

Special thanks to Captain Raymond and the crew and of the R/V Savannah and to Zeb, the chief scientist, and his team of scientists for a great experience!