Laura Guertin: Personal Log for Acoustic-Trawl Survey, June 22, 2023

NOAA Teacher at Sea

Laura Guertin

Aboard NOAA Ship Oscar Dyson

June 10 – June 22, 2023


Mission: 2023 Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska

Geographic Area of Cruise: Islands of Four Mountains area, to Shumagin Islands area
Location (in port, Kodiak Island): 57o 47.0200′ N, 152o 25.5543′ W

Date: June 22, 2023

Laura, wearing a heavy orange rain coat and large yellow gloves, holds a pollock (fish) up for a photo. She is also wearing a blue Teacher at Sea beanie. She's standing in the wet lab, where plastic green sorting baskets are stacked behind her on a long metal table.
TAS Laura Guertin and a pollock!

I’m wrapping up my time on NOAA Ship Oscar Dyson. There was so much that went in to getting out to sea for this expedition, and so many people that did so much work pulling for me and coordinating all the logistics before I joined Dyson (starting in 2020!), during my time at sea, and I’m sure after I leave the ship. Thank you to the wonderful people in the NOAA Teacher At Sea Office (Jennifer, Emily, Britta) and for giving me an opportunity to sail as a Teacher At Sea Alumna in 2023.

While waiting to board Oscar Dyson in 2022 during my first trip to Alaska, I prepared several blog posts that provided a background to NOAA, NOAA Fisheries, fisheries surveys, etc. With my undergraduate students in mind as my audience, I wanted to start the posts at the broadest scale and have the content easily utilized in multiple courses that I teach. As I authored these posts from Alaskan hotel rooms in 2022 and in 2023 and not while on the ship, they do not contain personal logs. Again, I thank the Teacher At Sea Program for giving me this flexibility in having one post that captures my personal log from the shortened expedition and keeping the “academic” focus for the prior content.

I’m trained as a geoscientist. During and after my studies in marine geology and geophysics, I’ve had the opportunity to participate in fieldwork in expeditions that have lasted hours to days to weeks to months. Although I think I know what it takes to live/work at sea, I’m reminded of new challenges on new ships in new ocean basins. It is so important as an educator that I take advantage of opportunities to get out to sea for my own professional development and to remind myself of what to share with students and community members when I present the story of what we did during our time at sea. I know I sound like a broken record – I’ve written these same words before. But that doesn’t mean these points are less important!


First topic of reflection – the people

This expedition had 32 people on board, which included the science party, bridge crew, stewards, engineering, deck, electronics technicians, and survey. The people on Oscar Dyson were born/raised and live in parts across the United States. Some people were sailing on a NOAA ship for the first time, and a few people were working for their first time on the ocean! We all have different backgrounds and training and personalities. In a way, I feel like stepping on to Oscar Dyson was like joining a game of Yahtzee – put all of these people together, shake us up (by sending us out to sea), and see what rolls out. Fortunately, during this “game”, everybody was a winner. On this 208.6-foot long ship, everyone has a purpose and function, and we must all work together to accomplish our research goals and the mission of the expedition. And to be successful, this group was supportive, understanding, respectful, took the time to listen, and made sure to laugh and smile through everything we faced.


Person standing on a ship on the ocean with clouds and an island in the background
Departing Kodiak aboard NOAA Ship Oscar Dyson

Next topic – the work

The schedule is very different than one I keep as an instructor. At home, I know the days/times I’m teaching, and I have a calendar to organize meetings and personal appointments. I’m pretty much in charge and in control of my own schedule. At sea, it’s not “me” but “we” when it comes to all day, each and every day. There are no weekends or holidays off. We work 12-hour shifts (mine was 4AM to 4PM) during the entire expedition. Once you leave your room at the start of your shift, you can’t go back to your room until your shift is over (you are sharing a room with someone that works a different shift than you, so the room is theirs during your work time).

But you are plenty busy during your 12 hours! There can be downtime as the ship transits to a site to begin data collection, and the weather can cause a change of plans for where you are headed and what work you can do. High winds, rainstorms, cold air temperatures, the ship rolling and heaving… we faced it all during our 13 days at sea.

And this work is hard! It is a balance of the physical demands faced by the deck crew setting the trawl net, and those working in the fish lab to furiously and accurately process the catch brought on board, and everyone ensuring that safety is a top priority at all times. The Chief Scientist working in the ship’s acoustics laboratory and all the NOAA Corps Officers working on the bridge must balance the scientific mission with the realities of our present situation – is there too much ship traffic to “go fishing” and set out the trawl net? Are there whales or other marine mammals in the vicinity? Is the wind speed too high for us to operate safely?

Everything on Oscar Dyson operates at a different pace and schedule from back home. Fortunately, we are able to balance out our time in the laboratories with taking short breaks to view beautiful sunrises and do some whale watching. Again, it is the amazing group of people on this ship, from the seasoned sailors to those doing fisheries work for the first time, that come together to mentor and support one another. They all make the work not seem like “work” but instead a really enjoyable and exciting time, knowing our efforts are making a difference for sustainable fisheries.


person standing on a ship with a volcanic mountain in the background
TAS Laura Guertin in the Gulf of Alaska

Final topic – what comes next

My time on Oscar Dyson has provided me an amazing opportunity and wealth of information about a field where I have had no training. Now that Leg 1 of the 2023 Summer Survey has wrapped up, I’m reminded of a popular saying from one of my graduate school faculty members – “so what?”

“So what?” stands for a family of questions or an attitude that leads to consideration of the broader significance of specific studies. These kinds of questions are particularly useful in descriptive research because, often, one can get so absorbed in collecting, organizing, and analyzing observations one forgets to consider the implications of the results.  —  Ginsburg (1982), Seeking Answers; suggestions for students

This “so what” piece is something I will spend even more time in the future thinking about. The “so what” of the survey is clear – NOAA does an excellent job explaining what sustainable fisheries are and why it matters (see my previous blog posts). But I still need to do a better job of figuring out how to connect the dots – the endpoints being what we do on the water (and the data we collect) to the production of the annual Status of Stocks and other products NOAA uses to inform the ecosystem management. The Magnuson-Stevens Fishery Conservation and Management Act, the primary law that governs marine fisheries management in federal waters, is also something I want to get up to speed on.

In addition, I need to think about defining the “so what” for the various audiences I will be sharing my at-sea experience. I have more NOAA resources to explore, such as The NOAA Fisheries Distribution Mapping and Analysis Portal (DisMAP) and The Fisheries One Stop Shop (FOSS) Public Data Portal. I will certainly be looking for other resources to pull in to my materials for students and presentations to the public, ranging from the Food and Agriculture Organization of the United Nations (FAO) to episodes of The Fisheries Podcast. I also look forward to exploring more resources on diversity and representation in fisheries science, with articles catching my eye: Women Leaders Are Essential for Tackling Ocean Sustainability Challenges (Fisheries Magazine, 2023) and Examining Diversity Inequities in Fisheries Science: A Call to Action (BioScience, 2016).

So my learning is not done! The sharing of my adventure and new knowledge is only beginning, and I look forward to sharing my pollock survey stories to not only positively impact the ocean literacy of my audiences, but to show how NOAA’s fishery work helps us address the Ocean Decade Challenges (part of the United Nations Decade of Ocean Science for Sustainable Development).


ship on the sea during sunrise
Sunrise view from Oscar Dyson (June 2023)

Laura Guertin: Ending with a Sea Shanty for Acoustic-Trawling for Walleye Pollock, June 22, 2023

NOAA Teacher at Sea

Laura Guertin

Aboard NOAA Ship Oscar Dyson

June 10 – June 22, 2023


Mission: 2023 Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska

Geographic Area of Cruise: Islands of Four Mountains area, to Shumagin Islands area
Location (in port, Kodiak Island): 57o 47.0200′ N, 152o 25.5543′ W

Date: June 22, 2023

Person wearing blue hat on the back of a ship on the ocean
TAS Laura Guertin shows off her Teacher at Sea beanie aboard NOAA Ship Oscar Dyson

As we return to Kodiak, Alaska, for Leg 1 to wrap up and Leg 2 to begin of the 2023 Summer Survey, it’s exciting to know that even during our shortened expedition time at sea, we’ve collected data that is going to inform Alaska walleye pollock stock assessment models and catch allocation. Any/all data are good data to have! I have thoroughly enjoyed my time on Oscar Dyson and met some incredibly smart, passionate, kind, creative, and innovative people. The NOAA community is filled with amazing individuals that are not only dedicated to the NOAA science mission but then sharing that new knowledge with others. I’ve played a small part in this NOAA community during the expedition (while wearing my NOAA hat!), but I hope my future teaching and outreach efforts will shine an even brighter spotlight on the essential work carried out by NOAA Fisheries and the agency as a whole.

Prior to joining the ship, this past academic year was filled with some highs and lows in teaching and student learning. There’s one topic that I’m not quite sure how to classify – and that’s the emergence of Chat GPT, and how AI is being used in higher education. I was joking with the Instructional Designer at my campus (Penn State Brandywine) that I was going to write a sea shanty about this expedition. Turns out, he was able to get AI (Bing, specifically) to write one for me! So as I wrap up my time as a Teacher At Sea Alumna, I leave you with these versus to sing to your favorite shanty rhythm.


A Song of Pollock and Trawls

Oh we are the surveyors of the Gulf so vast and wide
We sail the seas with acoustic gear to find the pollock hide
We use sound waves to scan the depths and mark what we have found
We measure their abundance and their biomass by the pound

(Chorus)

Yo ho ho as we sing this song
On Leg 2 we’ll bring the DriX along
Yo ho ho as we sing this song
We love our job and we love our fish
We love our job and we love our fish

We work in shifts around the clock to cover all the grounds
We set the course and speed and time to trawl a certain length
We haul the net and sort the catch and check their age and health
We record all the data and we share it with the world

(Chorus)

We do this work for science and for management as well
We help to keep the fishery sustainable and well
We study the pollock’s life history, ecology, and stock
We are proud to be part of this crew and this important work

(Chorus)

Oh we are the surveyors of the Gulf so vast and wide
We sail the seas with acoustic gear to find the pollock hide
We love our job and we love our fish
We love our job and we love our fish


Laura Guertin: Collecting Data: Icthysticks and Otoliths, June 21, 2023

dead fish laying on measurement board

NOAA Teacher at Sea

Laura Guertin

Aboard NOAA Ship Oscar Dyson

June 10 – June 22, 2023


Mission: 2023 Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska

Geographic Area of Cruise: Islands of Four Mountains area, to Shumagin Islands area
Location (10:45AM (Alaska Time), June 21): 55o 29.7525′ N, 156o 44.7276′ W

Data from 10:45AM (Alaska Time), June 21, 2023
Air Temperature: 8.4 oC
Water Temperature (mid-hull): 8.2oC
Wind Speed: 8 knots
Wind Direction: 20 degrees
Course Over Ground (COG): 76 degrees
Speed Over Ground (SOG): 11 knots

Date: June 21, 2023

Once the echo sounder has shown us the position of an aggregation of Alaska walleye pollock (we hope they are pollock and not some other fish species), we lower the trawl net and see what we can catch. This is where the trawl sonar and CamTrawl (see previous blog post) come in handy to give us an idea of what is going into the net. It’s an amazing coordination of effort between the acoustics lab (who decides where to trawl), the bridge for navigation, and the deck crew for setting/retrieving the haul.

We aim for trawling at the mid-water level, where the pollock are typically found. Pacific Ocean perch (POP, or rockfish) can also be found in the mid-water level in the Gulf of Alaska, especially just off the shelf break. Bottom trawls can yield pollock and other fish (e.g., POP and other rockfish species, various species of flatfish).

Once the trawl net has been brought back on board, the catch is emptied into a bin called a table. There is a door on the side of the table that opens into the fish lab. Once the table door opens, the fish spill into the laboratory where they travel down a conveyor belt for the initial sorting. Our target species is the pollock. We weigh everything that ends up onto the sorting table, either in bulk (by species) or individually.

  • pollock moving along belt
  • pile of dead rockfish
  • dead squid on the deck of a ship

A subset of around 250 pollock are set aside to collect length data. The length of these of each individual pollock are measured on an Ichthystick. This is another invention by Rick Towler and Kresimir Williams (remember the CamTrawl? (see previous blog post)). As described in their article An inexpensive millimeter-accuracy electronic length measuring board, these NOAA scientists describe using magnetic measuring technology that, to millimeter resolution, takes a measurement when you placed a magnet on a sensor that runs the length of the board. For our pollock measurements, we were looking to record the fork length, and a quick placement of the red magnet along the fish tail sends the data to a computer program called CLAMS (Catch Logger for Acoustic Midwater Surveys).

  • green plastic bins containing dead pollock (fish)
  • A close-up view of the end of the measuring board shows the larger sizes on the scale (marked 75, 80, 85). The board's logo reads "Ichthystick" and includes a stylized illustration of a pollock.
  • computer screen with long measuring board
  • illustration of a fish with lines showing the various lengths of measurement. Title: "Measuring Fish Length." labels: "Maximum Standard Length," "Fork Length," and "Maximum Total Length."
  • dead fish laying on measurement board
  • two people in rain gear in a laboratory taking measurements of fish

Another subset of approximately 50 pollock are set aside for additional data collection on individual specimens – length, weight, sex, maturity, and age. Otoliths (e.g., ear bones) are removed, and sometimes organs are removed and measured (ovaries for maturity development analyses, liver).

a black and white image showing pairs of otoliths from different fish species. Each otolith is white and gray in contrast with the solid black background; lighting reveals the ringed growth pattern
Otolith pairs (two per individual fish) from an assortment of Bering Sea fish species. Walleye pollock is located in the top left. Note: otolith sizes are not on a relative scale. Photo: NOAA Fisheries.

What are otoliths, and why remove them? Otoliths are ear stones, or ear bones, found in fish. To give you an idea of why we remove ear bones, let’s start by thinking about trees and corals… trees grow a new ring on their structure each year, and corals have differences in their skeletal density between the seasons (both trees and corals are also used to reconstruct past climate conditions (proxy data for paleoclimatology)). By counting the rings on trees and coral, we can calculate the age of that specimen. It turns out that fish also have a way to record their annual growth – and it occurs in their ear through Fish Otolith Chronologies.

Scientists are very interested in studying otoliths. When otolith data are combined with data on fish size, scientists are able to determine the growth rates of fish, which then combined with the survey work, helps inform annual fish stock assessment reports. We don’t do any of the otolith analyses on the ship, but we do collect the samples with a detailed label and all the corresponding data (fish length, sex, weight, location) that is sent back to the NOAA Fisheries Alaska Fisheries Science Center for analyses and entered into their Fish Otolith Collection Database.

  • Two otoliths in a person's hand
  • close-up view of two otoliths in a person's hand; the growth rings are visible
  • two gloved hands hold up a fish cut open to reveal the otoliths inside the head
  • person holding tweezers and placing object in glass vial

Did you know… More than 30,000 otoliths are read annually by NOAA Fisheries Alaska Fisheries Science Center scientists. So far, the Science Center has collected more than 1.1 million fish otoliths for ageing. (from NOAA Fisheries)


To learn more about the fascinating studies of otoliths and what NOAA Fisheries is doing, check out these websites:

NOAA Fisheries Age and Growth – NOAA Fisheries scientists assess the age and growth rates of fish species and populations to better monitor, assess, and manage stocks. There is also a separate site for Age and Growth Research in Alaska.

NOAA Fisheries Age and Growth Homework: Determining How Old Fish Are

NOAA Fisheries Near-Infrared Technology Identifies Fish Species From Otoliths – NOAA Fisheries scientists are developing ways to use near-infrared spectroscopy (NIRS) analysis of otoliths (fish ear stones) to provide accurate information for sustainable fisheries management faster.

If you are really curious to explore some fish otolith data, check out the Alaska Age And Growth Data Map, an interactive map displays collected specimen information from recent age and growth studies from Alaska Fisheries Science Center.

Screenshot from the Alaska Age and Growth Data Map website. On the left is a map of Alaska with lots of orange, blue, and green circles marking sampling locations. To the right are two graphs plotting lengths (y-axis) against ages (x-axis) for walleye pollock sampled in 2021. Blue circles (or box-and-whisker plots) represent samples from the Western Bering Sea and green circles represent samples from the Eastern Bering Sea.

Laura Guertin: Collecting data: Trawl Sonar and CamTrawl, June 20, 2023

rectangular frame with four orange round balls on top and two eyes on a metal cylinder in the middle

NOAA Teacher at Sea

Laura Guertin

Aboard NOAA Ship Oscar Dyson

June 10 – June 22, 2023


Mission: 2023 Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska

Geographic Area of Cruise: Islands of Four Mountains area, to Shumagin Islands area
Location (2PM (Alaska Time), June 19): 55o 30.9384′ N, 159o 47.6478′ W

Data from 2PM (Alaska Time), June 19, 2023
Air Temperature: 8.2 oC
Water Temperature (mid-hull): 6.8oC
Wind Speed: 18 knots
Wind Direction: 62 degrees
Course Over Ground (COG): 30 degrees
Speed Over Ground (SOG): 11 knots

Date: June 20, 2023

To conduct a fisheries survey or any oceanographic research expedition, there’s an enormous checklist of items you need on a ship. Jokingly, those on board will tell you that food and internet access are at the top of the list. But there’s no doubt that technology and its function, application, durability, etc., are critical during the time at sea. For example, see NOAA’s explainers for Ocean Exploration Technology: How Robots Are Uncovering the Mysteries of the Deep and Collecting and Visualizing Deep-Sea Data. For a broader look at the technologies NOAA uses to explore the ocean (vessels and submersibles, observing systems and sensors, communication technologies, and diving technologies), see Exploration Tools.

Leg 2 of this Summer Survey will be bringing on board the DriX, an uncrewed surface vehicle (USV), to see if this technology can improve the efficiency of collecting acoustic and biological data to estimate pollock abundance when working alongside Oscar Dyson. To read more/see a video, check out NOAA’s article, Uncrewed Surface Vehicles Complement NOAA Vessels for More Efficient Fisheries Surveys.


Trawl Sonar

A sonar device (housed in a yellow hard plastic casing marked SIMRAD) sits on deck on a pile of coiled ropes
The Simrad FS70 on the back deck of Oscar Dyson (June 2023)

Trawl sonar units are used to provide a rough estimate of how many fish are going into the trawl net. The device (which we’ve been using on our expedition, a Simrad FS70 nicknamed “the turtle”) is a third wire system that in real time establishes communication between the submerged sonar head and the bridge. On this cruise, the trawl sonar unit is placed on the headrope of the trawl net (i.e., on the top of the mouth of the net). It communicates its depth back to the ship. It also scans the mouth of the net and relays any acoustic images of things going into the net back to the ship. These data allow the scientists and crew to adjust the depth of the net and length of time the trawl net remains in the water to collect samples. Our goal is to collect enough fish (approximately one ton) to have a representative sample of the various species and lengths of fishes in the water column.

Screenshot of the display returned by the FS70 during a trawl. The display is broken into three columns. The rightmost column is a list of settings.
Screenshot of the display returned by the FS70 during a trawl. The pink/yellow/blue line in the left column is where you see the bottom of the net. This is also represented in the middle column by the multi-colored horizontal line you see in the third circle from the center. (Screenshot from Leg 1 provided by Rick Towler).

The Simrad FS70 makes an appearance in the NOAA video Alaska’s Pollock Fishery: A Model of Sustainability. NOAA Ship Bell M. Shimada uses this FS70 trawl sonar unit for Pacific hake acoustic trawl surveys (see article).


CamTrawl

CamTrawl sits on the deck of NOAA Ship Oscar Dyson next to a blue trawl net that hangs down from a huge suspended spool. The CamTrawl consists of a metal frame housing cameras (not very visible) and buoys (more visible).

One fascinating piece of technology we’re using on this pollock survey is the CamTrawl. This article I found will give you everything you would want to know about CamTrawl in a non-technical summary:

–> Developing 3D Stereo Camera Technology to Support Sustainable Fisheries (from NOAA)

Introduced in 2012, the CamTrawl is a stereo camera system when attached to a trawl net, can provide data about fish without ever touching a fish. This 3D imagery records fish passing by the camera towards the codend (the closed end of the trawl net), which provides species and size composition data as well as how fish behave in the trawl net to be collected from within a midwater survey trawl. CamTrawl is used to verify the trawl catch and specimen data, and in some cases, can be used to determine where in the water column the species entered the net. These data help inform ecosystem-based fisheries management.

  • rectangular frame with four orange round balls on top and two eyes on a metal cylinder in the middle
  • trapezoid frame with four orange balls across the top
  • two sketches and a photo of the CamTrawl setup
  • CamTrawl device attached to a trawl net on the deck of a ship

The CamTrawl has uses and applications beyond our walleye pollock survey. It can go to depths of the ocean where it is not possible to lower a trawl net and capture data on other fish species like the bottom-dwelling rockfish. CamTrawl can explore and map deep-sea corals, and there is potential for collaborative research with the fishing industry.

Some CamTrawl footage from Leg 1 of 2023 Summer Survey.

The CamTrawl was developed by NOAA scientists  Kresimir Williams and Rick Towler (both of whom I’m sailing with on Oscar Dyson for Leg 1). I feel incredibly fortunate to have sailed with these two scientists and to hear how NOAA encourages their researchers to be creative and experiment with developing technologies to advance NOAA’s overall mission and expedition objectives.

people around a net removing equipment, while standing on the back of a ship at sea
CamTrawl being detached from a trawl net after a mid-water trawl (June 16, 2023, on Oscar Dyson)

Curious to see more? Check out this Salmon shark caught on CamTrawl underwater camera. Below is a picture of a salmon shark from the Shumagin Islands, Alaska area in February 2017 (photo provided by Sarah Stienessen).

shark seen by an underwater camera

Additional sources for exploration:

Using AI and 3D stereo cameras to support fisheries (National Fisherman, March 12, 2023)

Boldt et al. (2018). Development of stereo camera methodologies to improve pelagic fish biomass estimates and inform ecosystem management in marine waters. Fisheries Research, 198. https://doi.org/10.1016/j.fishres.2017.10.013

Williams et al. (2018). A method for computing volumetric fish density using stereo cameras. Journal of Experimental Marine Biology and Ecology, 508. https://doi.org/10.1016/j.jembe.2018.08.001

Williams et al. (2016). Automated measurements of fish within a trawl using stereo images from a Camera-Trawl device (CamTrawl). Methods in Oceanography, 17. https://doi.org/10.1016/j.mio.2016.09.008

Laura Guertin: Collecting Data: Acoustic Survey, June 19, 2023

What looks like a long fishing rod attached to a ship's rail on the ocean

NOAA Teacher at Sea

Laura Guertin

Aboard NOAA Ship Oscar Dyson

June 10 – June 22, 2023


Mission: 2023 Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska

Geographic Area of Cruise: Islands of Four Mountains area, to Shumagin Islands area
Location (2PM (Alaska Time), June 18): 55o 15.3391′ N, 160o 17.8682′ W

Data from 2PM (Alaska Time), June 18, 2023
Air Temperature: 8.9 oC
Water Temperature (mid-hull): 7.7oC
Wind Speed: 4 knots
Wind Direction: 182 degrees
Course Over Ground (COG): 356 degrees
Speed Over Ground (SOG): 12 knots

Date: June 19, 2023

Acoustic fisheries surveys seek to estimate the abundance and distribution of fish in a particular area of the ocean. In my case, this Summer Survey is looking at walleye pollock in the Gulf of Alaska. How is this accomplished? Well, it’s not through this method:

The Alaska walleye pollock is widely distributed in the North Pacific Ocean with the largest concentrations in the eastern Bering Sea. For this expedition, Oscar Dyson is traveling to specific regions in the Gulf of Alaska and running transects perpendicular to the bathymetry/contours (which are not always perpendicular to the shore) to take measurements using acoustics and targeted trawling to determine the abundance and distribution of walleye pollock which informs stock assessment and management models. For this blog post, let’s focus on how and why we can use acoustics to locate fish.

A map of the distribution of walleye pollock in the waters around Alaska. Alaska is centered in this map, but not disconnected from adjacent portions of Canada, and portions of Russia are visible to the east. Colors representing topography are visible, emphasized on the land of Alaska and depicted faintly on Canada and Russia. The ocean is depicted as a solid blue. We see latitude and longitude lines at ten degree intervals. We can see labels for the Beaufort Sea (north of Alaska), Chukchi Sea (northwest), Bering Sea (west), Bristol Bay (southwest), Gulf of Alaska (south and southeast.) The polygon representing the distribution of pollock is shaded with diagonal red lines. It starts in the Chukchi Sea, extends southwest out to the Bering Sea, and curves around the Aleutian Islands, hugging the coastline around the Gulf of Alaska.
Walleye pollock (Gadus chalcogrammus) are distributed broadly in the North Pacific Ocean and eastern and western Bering Sea. In the Gulf of Alaska, pollock are considered as a single stock separate from those in the Bering Sea and Aleutian Islands.  Image from Alaska Department of Fish and Game.
A screenshot of an electronic nautical chart of the area around the Alaska Peninsula. Overlain on the chart are straight blue lines connecting blue points in a boxy meandering path in and out from the coastline, west to east. A few segments are red instead of blue.
An snapshot of a nautical chart with transects plotted. The first transect was run during Leg 1 on June 14 at the furthest location to the west, then the ship worked its way back east with approximately 40 nautical miles between transects. Once Oscar Dyson reached the Shumagin Islands, survey work shifted into this area..

Our story starts with the fish itself. Alaska walleye pollock have a swim bladder. The swim bladder is an internal organ filled with gas that allows a fish to maintain its buoyancy and stability at depth.

One interesting effect of the swim bladder is that it also functions as a resonating chamber that can produce and receive sound through sonar technology. This connection was first discovered in the 1970s, when low-frequency sound waves in the ocean come in contact with swim bladders and they resonated much like a tuning fork and return a strong echo (see WHOI’s Listening for Telltale Echoes from Fish).

illlustrated diagram of the internal anatomy of a boney fish. The swim bladder is located in the middle of the fish, beneath the long, skinny kidney and behind the stomach.
Internal anatomy of a boney fish. From Wikipedia (CC BY-SA 3.0).
Illustration of a survey ship on the ocean surface, with the ocean cutaway so that we can see a cone of sound pulses extending out from the ship's hull to the ocean floor. A school of fish is depicted in the middle of the water column, in the cone of sound.
The sound pulses travel down into the water column, illustrated by the white cones here, and bounce back when encountering resistance. (from NOAA Fisheries)

NOAA Fisheries uses echo sounding, which works by emitting vertical pulses of sound (often referred to as pings), and measuring the return strength and recording the time for the signal to leave and then return. Anything having a different density from the surrounding water (in our case – fish, plankton, air bubbles, the seafloor) can return a signal, or “echo”.

The strength or loudness of the echo is affected by how strongly different ocean elements reflect sound and how far away the source of the element is. The seafloor usually makes the strongest echo because it is composed of rock which has a density different than the density of water. In fish, the swim bladder provides a contrast from the water. In addition, each fish species has a unique target strength or amount of sound reflected to the receiver. The size and shape of the swim bladder influence the target strength. There is a different target strength to length relationship for each species of fish – the larger the fish, the greater the strength of the returning echo.

It’s important to note that echo sounders cannot identify fish species, directly or indirectly. The only way we know which fish species is causing a signal is based on trawl catch composition. There is nothing within the acoustic data that lets us identify fish species, even with the catch data. This is a subtle, but important, distinction. Acoustic data, particularly calibrated acoustic data, in tandem with the information from the trawl, definitely allows us to count fish.

Where is the echo sounder on Oscar Dyson? Look at the figure in the next section of this post – it’s a sketch of NOAA Ship Rainier, but the placement of the echo sounder is the same for Dyson. You can see a rectangular “board” that is extended down from the center of the ship. This is called – what else – the center board! Attached to the bottom of the center board are the echo sounders. When lowered, the echo sounders sit at 9 meters below the level of the sea (~4 meters below the bottom hull of the ship).

Did you know… Southern Resident killer whales use their own echolocation clicks to recognize the size and orientation of a Chinook’s swim bladder? Researchers report that the echo structure of the swim bladders from similar length but different species of salmon were different and probably recognizable by foraging killer whales. (reported in Au et al., 2010)


It starts with a calibration

Typical setup of the standard target and weight beneath the echo sounder. (from NOAA Fisheries)

Before we can begin collecting data, we need to calibrate the echo sounder. The calibration involves a standard target (a tungsten carbide sphere) with a known target strength. The calibration needs to be completed in waters that are calm and without significant marine life for the best results.

The sphere is suspended below the ship’s hull using monofilament lines fed through downriggers attached to ship railings. One downrigger is in line with the echo sounder on the starboard side, and the other two on the port side. This creates a triangle that suspends the sphere in the center of the echo sounder’s sound beam. By tightening and loosening the lines, the sphere can be positioned under the center of the sound beam and can also be moved throughout the beam. By doing an equipment calibration at the beginning and end of a survey, we can ensure the accuracy of our data.


  • What looks like a long fishing rod attached to a ship's rail on the ocean
  • Two people holding a ball on string on a ship
  • Shiny ball being lowered over side of ship

For further exploration

NOAA Ocean Service – Ocean Facts – How do scientists locate schools of fish?

Discovery of Sound in the Sea – How is sound used to locate fish?

NOAA Fisheries – Acoustic Echosounders–Essential Survey Equipment and Acoustic Hake Survey Methods on the West Coast

NOAA Ocean Service – Ocean Facts – What is sonar?

Science – Sounds like my favorite fish – killer whales differentiate salmon species by their sonar echoes

NOAA Fisheries – Sound Strategy: Hunting with the Southern Residents, Part 2

The Pew Charitable Trusts – Advanced Sonar Technology Helps NOAA Count Anchovy

Laura Guertin: NOAA Fisheries Surveys, Highlighting Acoustic Trawling, June 16, 2023

pollock moving along belt

NOAA Teacher at Sea

Laura Guertin

Aboard NOAA Ship Oscar Dyson

June 10 – June 22, 2023


Mission: 2023 Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska

Geographic Area of Cruise: Islands of Four Mountains area, Western Gulf of Alaska
Location (2PM (Alaska Time), June 15): 53o 38.9534′ N, 166o 10.9927′ W

Data from 2PM (Alaska Time), June 15, 2023
Air Temperature: 8.74 oC
Water Temperature (mid-hull): 6.2oC
Wind Speed: 3.55 knots
Wind Direction: 310.61 degrees
Course Over Ground (COG): 64.09 degrees
Speed Over Ground (SOG): 11.61 knots

Date: June 16, 2023

One of the nine key focus areas for NOAA is research (https://research.noaa.gov/). Additional summaries about NOAA’s research activities can be found at NOAA Ocean Today. There are also numerous articles that describe the impact of NOAA’s research activities, such as Five ways NOAA’s research improves hurricane forecasts and other articles listed under Latest News and Features.

A stylized graphic design representing NOAA Research, this is a blue circle containing icons of a chemistry beaker, a pie chart, and a bar graph. The adjacent text contains the description of NOAA Research found here: https://www.noaa.gov/research

And now, it’s time for some science and surveying! Before I dive into the specifics of the methods we are carrying out on Oscar Dyson, I’m sharing this incredibly helpful NOAA Fisheries page that summarizes their Research Surveys, where “Our scientists and partners collect data on the water, from aircrafts, and from shore to understand the abundance, distribution, and health of marine life and habitats. That data forms the scientific foundation for our management and conservation work.”

There is also an informative podcast episode, Learn About NOAA Fisheries Surveys (transcript available at link). This podcast covers the need for sustainable fisheries, the 2013-2016 North Pacific Blob, how surveys were done historically, how surveys are using new technology, the impact of the pandemic, and the concept of being in a “stationary” versus “non-stationary” world. Such a fascinating listen!

First episode of “Dive In with NOAA Fisheries,” titled Learn About NOAA Fisheries Surveys

There is another podcast episode from the same series that is an excellent follow-on from the episode available above. Surveying Alaska’s Waters (transcript available at link) shares how surveys are a tools that allow NOAA to reach its mission, whether those measurement techniques come from satellites, autonomous vehicles, buoys, ships, drones, etc. Although these tools assist NOAA scientists in collecting data, climate change is playing an even bigger role in making ecosystem management a moving target. Again – worth a listen!

Third episode of “Dive In with NOAA Fisheries,” titled Surveying Alaska’s Waters

Surveys in the Gulf of Alaska

Trawl surveys have been conducted by Alaska Fisheries Science Center (AFSC) beginning in 1984 to assess the abundance of groundfish in the Gulf of Alaska (2021 Stock Assessment Report, p. 9). Starting in 2001, the survey frequency was increased from once every three years to once every two years on odd-numbered years. This is a flyer that describes the biennial bottom trawl survey in the Gulf of Alaska 2023.

The website Alaska Fish Research Surveys includes field season research briefs going back to 2021. The 2023 field season includes a link to my current expedition, Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska.

The strategy of combining trawl and acoustic surveys was developed by AFSC and the University of Washington. They published a paper in the Canadian Journal of Fisheries and Aquatic Sciences (Kotwicki et al., 2018) that discusses the need to perform acoustic-trawl (AT) and bottom-trawl (BT) surveys to accurately estimate the abundance of fish populations along with their spatial distribution. I’ve provided below part of a news release from the University of Washington describing the content of the publication:

Many species of fish spend some of the time on the ocean bottom, and some of their time far off the bottom, which makes them hard to survey. Acoustic surveys (that bounce sound off fish schools), can estimate the midwater component of so-called “semipelagic” fish, while trawl surveys can measure the portion on the bottom. Now a new method has been developed that combines data from both types of surveys into a single estimate using information about the environment (bottom light, temperature, sand type, and fish size). The new method has been used to assess the status of walleye pollock, which sustains the largest fishery in the United States.

This image from Kotwicki et al., 2018, does an excellent job of showing the two types of survey methods, acoustic and bottom trawling.

Illustration of conceptual model of walleye pollock sampling by an echo sounder and a bottom trawl. At the top right is an illustration of a fishing vessel sailing left. Two blue lines extend out the back of the vessel diagonally downward toward the seafloor and connect to two points on an illustration of a bottom trawl net. To the left of the net (in front of the opening) is drawn a school of fish; more fish are drawn directly below the ship. Two other blue lines extend diagonally down from the center of the ship's hull to form a triangle representing the acoustic swath. Blue boxes indicate the areas of the water column missed by either the bottom trawl net (that is, the entire pelagic zone) or the acoustic sampling (a narrow benthic zone right off the seafloor.)
Fig. 1. Illustration of conceptual model of walleye pollock sampling by an echo sounder and a bottom trawl. Note that acoustic data are collected directly under the survey vessel, while the bottom trawl catches walleye pollock some distance behind the vessel. Diving occurs in the time between the vessel passing over the school of walleye pollock and the trawl catching the same school. Source: Kotwicki et al. 2018.

What is different for my current expedition is that we are not doing any bottom trawling. We are doing the acoustic piece of the survey and trawling off the bottom. Separate surveys and ships are collecting the bottom data, and then will be combined with our data to provide a more accurate snapshot for the water column for the annual Stock Assessment Report for Walleye Pollock. AT and BT surveys get NOAA to their research objective: informing fish stock assessment models and catch allocation. NOAA publishes an annual 100+page Assessment of the Walleye Pollock Stock in the Gulf of Alaska from the surveys conducted each year (see reports from 2019, 2020, 2021).

Check out this website if you are curious to see images from Bottom Trawl Surveys in Alaska. NOAA’s Groundfish Assessment Program regularly conducts bottom trawl surveys to assess the condition of groundfish and shellfish stocks in Alaskan marine waters).

1883 International Fisheries Exhibition

To prepare to sail on Leg 1 of the Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska, I did a lot of reading and preparation so I could better understand what I would be learning, and how I could then connect the material with my students and additional audiences I see post-expedition. These two books in the image below helped give me a much better picture of not only walleye pollock but the fisheries industry, policy, and practices over time and space.

Photo of two books - one titled Billion-Dollar Fish, by Kevin Bailey, and other titled World Without Fish, by Mark Kurlansky

Each of these books provides some fascinating insight into the history, thought, and even debates, about the nature of ocean resources.

The title of Chapter 4 in Kurlansky’s book gives a hint for how to respond to my questions: “Being The Myth of Nature’s Bounty And How Scientists Got It Wrong For Many Years.” Early in the chapter, Kurlansky states:

“In the 1800s, when the study of fish and oceans was a relatively new science, it was the fishermen who were afraid that fish populations could be destroyed by catching too many fish, especially small fish. Scientists at the time believed that it was impossible to catch too many fish because fish produced so many eggs.” — World Without Fish, p. 53

One of the causes of concern for fishermen was the new technology developing – specifically, engine power, that allowed for even more fish to be caught.

There was a great historical debate on fisheries, too! London was the site of the Great International Fisheries Exhibition of 1883, where a debate about the ocean took place between British scientists Thomas Huxley and Edwin “Ray” Lankester. Huxley gave the inaugural address of the exposition – you can read it in its entirety online. Here are excerpts:

“I believe that it may be affirmed with confidence that, in relation to our present modes of fishing, a number of the most important sea fisheries… are inexhaustible… and probably all the great sea-fisheries, are inexhaustible; that is to say that nothing we do seriously affects the number of fish. And any attempt to regulate these fisheries seems consequently… to be useless.” (*feel free to dive into Huxley’s speech to see his reasoning – the multitudes of fish available, and the destruction is minimal)

Then Lankester gave the final summary speech of the Exhibition – a rebuttal to Huxley. Lankester made the point that the fish in the sea are not unlimited, and captured fish are not readily replaced by others that exist further offshore from the fishing location. He raised the concern that the removal of the parents by fishing was going to impact the production of the young.

Although at the time many gave Huxley the victory in this debate, Huxley did not take into account the new development that I mentioned above – the modern trawl and the steam trawler to pull it, resulting in larger nets and catches. It’s interesting to note that eventually, Huxley studied the impact from engine-driven net draggers and changed his story. Huxley eventually agreed that overfishing was not only possible, but that it was happening.

Now to circle back to why we survey fisheries… it ultimately comes down to ecosystem management. As described in the two audio files at the top of this blog post and in my other posts, as well as the title to Chapter 8 in Kurlansky’s book, “The Best Solution To Overfishing: Sustainable Fishing.” And to engage in sustainable fishing, you need the data to make that happen – hence, fisheries surveys!

Laura Guertin: NOAA and NOAA Fisheries, June 12, 2023

NOAA Teacher at Sea

Laura Guertin

Aboard NOAA Ship Oscar Dyson

June 10 – June 22, 2023


Mission: 2023 Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska

Geographic Area of Cruise: Islands of Four Mountains area, Western Gulf of Alaska
Location (site of calibration, June 11): 57o 32.6154′ N, 153o 55.8318′ W

Data from 2PM (Alaska Time), June 11, 2023
Air Temperature: 8.29 oC
Water Temperature (mid-hull): 6.3oC
Wind Speed: 10.35 knots
Wind Direction: 166.14 degrees
Course Over Ground (COG): 222.34 degrees
Speed Over Ground (SOG): 0.13 knots

COG = The direction the ship is heading relative to land. Over Ground means in relation to the Earth, so COG means the true direction free from the effects of sea currents.
SOG = Speed, real progress with respect to Earth. SOG means the true speed free from the effects of sea currents.

Date: June 12, 2023

I am pretty sure that, on a daily basis, I mention NOAA in my classroom, during public outreach events, and in conversations with colleagues and neighbors. But too often, individuals are not aware of this government agency and the critical role NOAA plays in our lives, even for those that are not scientists. So this blog post is for everyone not familiar with the services NOAA provides us all, along with a focus on NOAA’s National Marine Fisheries Service (aka “NOAA Fisheries”).


NOAA is an agency that enriches life through science. Our reach goes from the surface of the sun to the depths of the ocean floor as we work to keep the public informed of the changing environment around them. — from About our agency

The letters N-O-A-A stand for National Oceanic and Atmospheric Administration, an agency in the U.S. Department of Commerce. NOAA has a fascinating history, going back to 1807 and President Thomas Jefferson founding America’s first physical science agency, the Survey of the Coast. Fast-forward to 1870, when the Weather Bureau was establshed as the first agency dedicated to the atmospheric sciences. In 1871, the first conservation agency, the U.S. Commission of Fish and Fisheries, was in place. All three of these agencies were brought together in 1970 with the formation of NOAA. (*yes, NOAA recently celebrated its 50th anniversary! See this playlist of videos to learn even more about its history and the people of NOAA from over the years. There is an additional video that goes back to the original agency and mission of 1807.)

NOAA mission: To understand and predict changes in climate, weather, ocean, and coasts, to share that knowledge and information with others, and to conserve and manage coastal and marine ecosystems and resources. — from Our mission and vision

View this video for an overview of NOAA “meeting the moment.”

When I think of and hear “NOAA”, there are several terms/phrases that pop into my mind – science research, atmosphere, hydrosphere, weather and climate, health and safety, economy, conservation, sustainability, and so many more. The educational resources provided by NOAA are also valuable for additional background reading, citizen science opportunities, and multimedia materials (including podcasts!).

Quilt hanging on a wall with NOAA across the top and images that represent NOAA's areas of work

A STEAM Moment

I mentioned in my first blog post how I have a passion for and explore the integration of science and creative arts, specifically crafting via crocheting and quilting. To help others learn about the mission of NOAA and its key focus areas, I created a quilt to showcase NOAA’s work in research, weatherclimateocean & coastsfisherieschartingsatellitesmarine & aviationsanctuaries, and education. This quilt is just another tool in my education/outreach toolkit! To learn more about this quilt and to view a video, see this post.


NOAA Fisheries

NOAA Fisheries provides science-based conservation and management for sustainable fisheries and aquaculture, marine mammals, endangered species and their habitats. — from Fisheries

NOAA Fisheries, also known as the National Marine Fisheries Service, is a NOAA office composed of five regional offices, six science centers, and more than 20 laboratories around the United States and U.S. territories. Working with additional partners, NOAA Fisheries achieves its two core mandates: (1) to ensure the productivity and sustainability of fisheries and fishing communities through science-based decision-making and compliance with regulations; and (2) to recover and conserve protected resources including whales, turtles, and salmon.

There are several NOAA websites and videos that showcase the history and work of this office. I recommend the NOAA Fisheries About Us page, History page, YouTube playlist of NOAA Fisheries videos, and especially this overview video:

The main Fisheries page on NOAA’s website has fascinating facts you can scroll through. For example, I did not know that the total area NOAA Fisheries is responsible for monitoring and enforcing regulations for marine fisheries is 4.4 million square miles! This area is the largest Exclusive Economic Zone (EEZ) in the world! And the Fisheries News & Announcements page is a wealth of articles, press releases, multimedia material and more that will soon become required reading for students in my courses, adding to the materials I already tap into on NOAA’s Climate.gov and NOAA’s Ocean Facts!


#TheMoreYouNOAA

NOAA has an incredible range of resources and materials that are constantly being updated and expanded upon. There is something for everyone! (*including on Twitter, where you will find individuals and organizations highlighting NOAA’s work with the hashtag #TheMoreYouNOAA)

I’ll end this post with one of the fun audio narratives from the NOAA Ocean podcast series, which details phrases we use today that came from the Age of Sail (the period of time between the 16th and 19th centuries, transcript available).

NOAA Ocean Podcast: Episode 29 – The Nautical Origins of 10 Popular Phrases

The Challenger mission – so much more than fish

The mission of H.M.S. Challenger 150+ years ago was not as developed as the statements for NOAA and NOAA Fisheries – terms such as ‘conservation’, ‘management’, and ‘sustainability’ were not part of the expedition. Challenger was all about collecting samples, whether those samples be seafloor mud, manganese modules, corals, crabs, and plant and animal life from the islands they visited over their 3-year journey. The six Challenger scientists were not concerned about aquatic systems or human/environment interactions – this really was a journey of discovery and documenting what exists in these unexplored areas. It took 50 volumes of the Challenger Report to describe what was seen and collected – including roughly 4,700 new plant and animal species!

For the fish samples collected at that time, the “Challenger fishes” were incorporated into the British Museum (of Natural History) collection. There were 688 specimens of shallow water, shore and miscellaneous estuarine and freshwater fishes; 261 deep-sea fishes; and 125 pelagic fishes. Some of the fish were then sent over to the National Museum of Ireland in 1899, including type specimens of sixteen species (*data on the Challenger fishes from Wheeler and O’Riordan, 1969).

Sketch of a deep-sea eel, a figure from the Challenger publication
A deep-sea eel, one of the many sketches from samples collected on the H.M.S. Challenger (image in the public domain, part of the Freshwater and Marine Image Bank)

David Madden: Preparing for Pisces 2019, July 11, 2019

NOAA Teacher at Sea

David Madden

Preparing to Board NOAA Ship Pisces

July 15 – 29, 2019


Mission: South East Fisheries Independent Survey

Geographic Area of Cruise: Atlantic Ocean, SE US continental shelf ranging from Cape Hatteras, NC (35º30’ N, 75º19’W) to St. Lucie Inlet, FL (27º00’N, 75º59’W)

Date: July 11, 2019

NOAA Ship Pisces
NOAA Ship Pisces. Photo by National Oceanic and Atmospheric Administration.

Introductory Post

Personal Log:

Hello friends,

My name is David Madden. I am a high school science teacher at Maclay School in Tallahassee, FL, and I’m getting ready to go on my NOAA Teacher at Sea cruise! I recently completed my 21st year teaching – it’s been a super fun journey. I am as excited heading into year 22 as I was in years 1-5. I’ve been in love with nature since I can remember.

Madden Science logo
Madden Science logo

Over the course of my career I’ve taught: AP Biology, regular Biology, Physics, Integrated Science (bio, chem, phys combined), and Marine Biology. This upcoming year I will also be teaching AP Environmental Science. I’ve loved every minute of my job – teaching and learning with students, challenging myself and being challenged by my friends and colleagues, and exploring new adventures – like NOAA Teacher at Sea. Along the way I’ve also been a coach, helping kids learn the value of sports, including: volleyball, basketball, tennis, and track.

Over the last few years I’ve started making educational videos for my students – as a way for them to further develop their love of science and grow their scientific literacy: Madden Science on YouTube and www.maddenscience.com.

Madden family
The hardest part of the trip will be missing these two!

Starting on July 15th, 2019, I will be aboard NOAA Ship Pisces as part of the Southeast Fishery-Independent Survey (SEFIS). The mission of the cruise will be to conduct “applied fishery-independent sampling with chevron fish traps and attached underwater video cameras, and catch rates and biological data from SEFIS are critical for various stock assessments for economically important reef fishes along the southeast US Atlantic coast.” It’s an amazing opportunity for me to participate in important scientific research. I have the opportunity to work alongside and learn from some of the best scientists in the world.

Pisces Picture Wikipedia
NOAA Ship Pisces. Photo by National Oceanic and Atmospheric Administration.

There are so many things about NOAA Teacher at Sea that I’m looking forward to. Here’s a few:

  1. Spending time out on the ocean, experiencing the energy and power of the wild sea.
  2. Working with and learning from some of the world’s leading oceanic and atmospheric scientists.
  3. Learning about fish and marine biodiversity in the Atlantic.
  4. Asking tons of questions and hopefully learning more about the ocean and its central importance in our changing world.
  5. Sharing my experience with you; my family, friends, students, and the public.   I’ll share this adventure via this blog and also via videos I hope to create while on NOAA Ship Pisces. My goal is for these blog posts and videos to serve as a real-time record of the cruise, to be helpful and interesting right now, and also to help serve as resources for my classes and other classrooms around the world.

Neato Fact:

NOAA Ship Pisces is 209 feet (64 meters) long. To give you an idea, that’s basically 70% of a football field. That’s longer than two blue whales (~90 feet), the largest and longest animal to ever live! Usain Bolt can run that far in 6.13 seconds (assuming 9.58 s for 100 m). A starfish, traveling at 60 feet/hour, would take about 3.5 hours to travel the length of Pisces.

Madden Pisces diagram
NOAA Ship Pisces is 209 ft long.

I’d love it if you could join in with me on this adventure – please comment and ask questions. I’ll do my best to respond in a helpful and interesting way!

Stephen Kade: Oregon II Spotlight: Chelsea Parrish, August 2, 2018

Chelsea Parrish

NOAA Teacher at Sea

Stephen Kade

Aboard NOAA Ship Oregon II

July 23 – August 10, 2018

Mission: Long Line Shark/ Red Snapper survey Leg 1
Geographic Area: 30 54 760 N, 76 32 86.0 W, 40 nautical miles E of Cape Lookout, North Carolina
Date: August 2, 2018
Weather Data from the Bridge:
Wind speed 11 knots,
Air Temp: 25.c,
Visibility 10 nautical miles,
Wave height 3 foot

 

Spotlight: ENS Chelsea Parrish

During my NOAA Teacher at Sea experience, I have truly been inspired and impressed by how many important roles of our operation on the Oregon II are fulfilled by females. One of the most important crew members is Ensign (ENS) Chelsea Parrish who is one of our OOD’s. or Officers of the Deck. I think her story will inspire my daughter and female students to aim high for their future!

As a young child, Chelsea was inspired by her father who spent 20 years in the US Navy. She loved hearing stories about his role working aboard Navy submarines, and all of the interesting things one must do to work below the sea. After high school she attended the Savannah State University, in Georgia. She was able to train aboard the R/V Savannah where she learned about biological, chemical, physical, and geological oceanographic studies in estuaries and continental shelf waters in the southeastern US Atlantic and Gulf coasts. She earned her Bachelor degree in Biology, and received her Masters degree in Marine Science. While she didn’t need her Masters to get into her field, she knew that in the long run it would put herself above others in a highly competitive field and would be an advantage in the future.

A year into graduate school, she attended a conference, where she learned about the NOAA Corps. The NOAA Corps is one of the seven federally uniformed services of the United States, and is made up of scientifically and technically trained and commissioned officers. It was there that she met Lt. Commander Adler, whom she kept in contact with. Just a short time later, she was called for an open opportunity to join the NOAA Corps. She had 17 weeks of real world training at the Coast Guard Academy for Officer Candidate School (OCS). It was there that she learned how NOAA is different than the US Navy. The Navy focuses on various military actions, while NOAA Corps focus is on science and their motto is: “Science, Service, Stewardship”. It was then Chelsea knew she came to the right place to fulfill her professional goals.

After graduating from training, she earned her Officer of the Deck qualification aboard Oregon II in September, 2017. She will be aboard completing her assignment in January, 2019. Chelsea has many important duties to perform on the ship, including steering the ship. This entails following the chart that the CO (Commanding Officer, or Captain) has planned out to fulfill the mission of the ship. In our case the mission is long line fishing of Red Snapper and Sharks at many stations along the southeastern US and the Gulf of Mexico. While the CO is off duty, she must keep him informed of any changes that need to made to the Navigation trackline to ensure there is a safe navigational watch during her shift, which is normally 4 hours at a time.

The most common thing to happen that happens to create a change in course is foul weather, but there are many unforeseen events as well. Chelsea must study reports from the US Coast Guard which let her know various events happening in the region we are sailing. This can be other ships performing science missions, merchant navy ships of other countries in the area, oil drilling operations, or in our case yesterday, live ammunition firing exercises by the US Navy.

Chelsea Parrish
ENS Chelsea Parrish on the bridge of NOAA Ship Oregon II

Chelsea is also the environmental compliance officer aboard the ship, and she must follow specific rules set up by the EPA (Environmental Protection Agency) to ensure Oregon II is environmentally responsible while at sea. She must be sure there aren’t any issues with fuel, garbage, or any other foreign substance being put in the ocean while at port, or at sea. She also keeps a recycling log to track all activity and incidents that occur. Chelsea also runs the ship store and keeps track of all the items to be sold to the crew and volunteers aboard the ship.

Finally, Chelsea is the go- to rescue swimmer aboard Oregon II, and is the first to jump into the ocean if there is someone overboard to be retained from our ship, or another at sea near us. I saw her in action during our drills at the beginning of our trip and I was impressed at how quickly the crew launched our rescue boat, so Chelsea could rescue our life ring that acted as our “person overboard”. She also took a 3 week class to get certified as a NOAA working scuba diver. This certification allows her to be in the ocean to find, and/or fix any issues we have with the ship while at sea that can’t be fixed from the deck or rescue boat. She is certified to dive down to 130 feet below the surface.

It certainly is impressive how much Chelsea has accomplished in her 28 years. I hope this post inspires all my students, but especially the girls to go out into the world and do anything they can dream of, as that is exactly what Chelsea did. When her time aboard Oregon II is over, Chelsea plans to be a Cetacean Photogrammetry Specialist in La Jolla, California. She will be getting to get her FAA drone license to fly hexacopter drones from ships. Her duties will be to find, count and track marine mammals such as seals, dolphins, and whales. She said she loves helping NOAA fulfill their mission of helping marine animals and data collecting to further the study of these creatures and helping ensure their survival in the future.

Personal Log:
Now that I am almost a week into the survey, I am starting to fall into the rhythm  of working on the ship. The 12 hour work days are certainly long, but we do get breaks between stations to rest, converse, and prepare for the next run. If it’s a good station and we haul in a lot of catch, we often spend time talking about each of the things we caught and become like kids on Christmas if it’s something new and interesting. We also spend time logging all the data we collect into the computer for later research on land.
We have seen just about all the different weather scenarios you could imagine, and have endured bright, 93 degree cloudless days, and windy days with 6 foot waves and pouring rain. We’ve had to call off a few stations until our way back south down the coast due to  poor conditions, because on all NOAA ships, the motto is “Safety First”. The real trick is working during the big wave conditions and learning how to function as a human being while the boat is rocking and rolling all about for the entire day. I’m getting better at anticipating where my next step will land and compensating for the constant shifting gravity under my feet. It will make walking on earth again seem so easy!
Animals Seen Today: Sandbar sharks, Scalloped Hammerhead Shark, Blue Line Tile Fish, Grouper, Atlantic Spotted Dolphins, Squid

 

Denise Harrington: Big Sharks Bite, Itty Bitty Sharks Intrigue – May 11, 2016

NOAA Teacher at Sea
Denise Harrington
Aboard NOAA Ship Pisces (In Port)
May 04, 2016 – May 12, 2016

 

Date: Saturday, May 11, 2016

P1050542
Dr. Trey Driggers shares a great white shark jaw with me.  Photo courtesy of Kevin Rademacher

My children sometimes complain when they find a bird in the freezer next to their frozen waffles.  Yet in Pascagoula, Mississippi, relentless digging in the freezer is how discoveries are made.

P1050566
Mark Grace, in his office.

Mark Grace has been a biologist with NOAA for 30 years.  If he counted all his time at sea, excluding volunteer and international research, he spent “seven solid years floating.” Out of 200 surveys with NOAA, he was the field party chief for 41 of those projects.  In all of those years, he had never discovered a new species, almost no one ever does.   Yet, in 2013, he discovered an extremely rare, tiny species of pocket shark that had been identified only one other time, in 1979 off the coast of Peru.

pocket shark
This photo of the pocket shark shows its remarkable pocket, just behind the pectoral fin, and some skin damage in front of the eye that may have occurred from the pressure of being harvested from the depths.  Credit J. Wicker NOAA/NMFS/SEFSC

Scientists happened to find the 5 ½ inch shark while doing research on sperm whale feeding habits in the Gulf of Mexico in 2010.    The pocket, unnoticed at first, is what makes this shark so unique. Jesse Wicker took this photo in 2010, aboard NOAA Ship Pisces during the whale survey while processing mountains of sea creatures.  Scientists must pay meticulous attention to detail as they document and photograph specimens at sea.  You never know when your photo may prove crucial to scientific discovery.

The Discovery

The specimens collected in 2010 were identified and then placed in freezers to preserve them for further analysis.

freezer of fish
Photo courtesy of Mark Grace

Mark began to work through the specimens, but it took much longer than he had imagined.  He’d undo a bag, and there would be a hundred fish to process. Each bag seemed bottomless.  By the time Mark got to the last bags, the shark had been in the freezer for three years, eight months.  Brrr…..

Yet he knew the fish weren’t worth much if they stayed in the freezer. He was particularly interested in the cookie cutter shark named after the cookie shaped bites they leave in their prey.  He kept on.

cookie bite
NOAA photo The round mark left on the back of this toothed whale is a telltale sign of a cookie cutter shark, such as this one below.

cookie cutter shark

Cookie Cutter Shark, NOAA’s Fisheries Collection, Photo taken aboard NOAA Ship Pisces.

A shark caught his eye. The shark was identified as belonging to the Dalatiidae family (kitefin sharks), many of whom share luminescent features.

pocket shark bottom
Kitefin shark harvested in 2010 aboard Pisces. Credit: J. Wicker NOAA/NMFS/SEFSC 2010

Yet this shark did not look like the other cookie cutter sharks he had studied.  It had a remarkable fold of skin behind the pectoral fin that did not look like an injury or parasite.  Once Mark saw a matching feature behind the other fin, he realized this shark was like no other species he had ever seen.  Looking in his reference books, he could not find this shark, because it did not exist in any book on his shelf.

pocket
Photo credit: Mark Grace – The pockets behind the pectoral fin of the 2010 specimen.

pocket shark diagram

Over hundreds of millions of years, shark adaptations have helped them survive.  They have become smoother, faster, and better at sensing out their prey.  Many sharks have the hard, smooth, scales on their skin called denticles that increase their speed and reduce noise, just like my friend’s fast blue Sterling fiberglass kayak compared to my noisy, orange, plastic Avocet kayak.

Just below the snout, this shark had has a translucent denticle, or scale, at the center of surrounding denticles, giving the appearance of a flower.

pocket shark denticle
Magnified photo of modified denticle.

Mark hypothesized that this unique adaptation might be a pit organ, used to sense currents, or prey.  Scientists have many thoughts about the purposes for this organ.  Each unique feature of the shark inspired Mark to research further.

bioluminescent creatures
Composite of images of bio luminescent species collected with pocket shark by Mark Grace.

One adaption many creatures of deep ocean waters is they glow.  Small photophores, or organs on their body, emit light and signals to communicate with other animals.  In this picture, Mark created a composite of several of the other glowing animals that were pulled up in the trawl net with the pocket shark (middle).

In 30 years, he had never seen a species this rare.  A vitelline scar, like the belly button of a human, indicated that the five and a half inch fish was only a few days to no more than a few weeks old when it was born near the place it was harvested. It was a baby. There had to be at least one other fish like it somewhere in the world.

Connections to others

After a little research, Mark connected this pocket shark with the only other pocket shark ever recorded, in 1979 off the coast of Peru and Chile in the east Pacific Ocean.  His research was particularly challenging because Dolganov, the scientist who first identified the new species pocket shark, wrote up his findings in 1984, in Russian.  Mark had to find a Russian scientist to translate the document to English.

 

Sheiko pocket shark
The only other known pocket shark, harvested in 1974, is not in great condition.  Photo 2013, Boris Sheiko

 

pocket shark with ruler
Look at those unique photophore clusters on the shark’s underside.  Photo credit: J. Wicher NOAA/NMFS/SEFSC, 2010

The older pocket shark was a female, and probably an adult, at 20 inches long. Between the two sharks, there were many similarities, but also many differences.

P1060196
In second grade, we like to make Venn Diagrams in situations such as these.  So I drew this one, comparing the shark harvested in 1974 to the shark harvested in 2010.

Once again, I find myself swirling in a sea of questions.  Are these two pocket sharks, which lived far away from each other, of the same species?  Are their morphological (physical) differences enough to make them unable to reproduce with each other?  Scientists ask similar questions to determine if they have found a new species.

What makes a species unique?

Species identification is no easy task.  Mark reached out to experts, as we all do, with his questions.  At the Hollings Marine Laboratory, Gavin Naylor began to collaborate with Mark as part of his global effort to collect DNA of all living things.  He added the pocket shark to the portion of the tree of life he manages at Sharksrays.org.  John Denton, of the American Museum of Natural History, and Michael Doosey and Henry Bart from the Tulane University Biodiversity Research Institute became part of this group of five scientists who would be connected for life through this 5 ½ inch shark. Together they read many books, sliced and diced the shark digitally, and traveled around the world to meet with other biological explorers. They determined that the specimen collected in the Gulf of Mexico, like specimen in the east Pacific, was a pocket shark, Mollisquama.

pocket shark ct
This three dimensional image obtained by Gavin Naylor through a high resolution CT scan at the Hollings Marine Laboratory allows Mark and Gavin to share their research digitally, with scientists around the world, while keeping the baby pocket shark intact.

 

P1050570
The American Museum of Natural History in New York used a three dimension printer to obtain a model of the shark from the CT scan.

The most intriguing part of the scientists’ research lies in the title of their work, hidden in Latin: Mollisquama sp., the name for our Gulf of Mexico baby, and Mollisquama parini, its Russian relative. I notice that the second part of their name is different! Yet in order to establish our shark as a new species of Mollisquama, these scientists will have to write a paper that is “strong enough to withstand many layers of peer review,” says Mark. They will need to demonstrate that the physical differences (e.g. teeth and vertebrae) are significant enough to support a new species identification.

If they are successful in proving their pocket shark is different than its eastern Pacific Ocean relative, what should he name this species of shark?  Mark suggests an international competition, as it will take many minds “to be good enough for NOAA.”

Mark reminds us that when we learn about this shark, we realize that the one great interconnected ocean and its inhabitants are a still a place of mystery and discovery.  We have much more to learn about the ocean and its inhabitants than we know.

Personal Log

Often the greatest discoveries come when you least expect them, hiding in expectations dashed, problems, or the path less traveled. While the Pisces was scheduled to depart last week, the crew continues to work on long and short term projects on the ship and in the lab.

me on screen

Photo courtesy of William Osborn

I am being supervised by Engineering Department Chief “Chief” Brent Jones, on one of many cameras around the ship, as I “assist” the engineering crew get through their list of duties.  His words of wisdom? “Hands off!”

Here, Dana Reid, General Vessel Assistant, and I are opening up the aft valve, so that Travis Martin can switch out the strainers in the main water system.  Dirty strainers get hosed out at least every other day.  Today we caught a small eel in the strainer.

righty tighty

Photo Courtesy of William Osborn

 

cleaning the strainer

Travis Martin, TAS Denise Harrington, and Dana Reid are switching out the strainer, while Farron “Junior” Cornell, Fisherman, photo bombs us.

Acronyms abound at NOAA, and teachers are affectionately referred to, not by our names, but as “TAS,” for Teacher at Sea.  I’d like to name a new species of this family of adventuresome NOAA educators, “TIP” for those Teachers in Port who adapt by learning about all the amazing discoveries that take place on land following successful projects at sea.  I want to extend a big thank you to Mark Grace and the fishery biologists in the lab who did not know they’d be hosting a TIP.

While in port, I have been able to explore the various land based habitats which are much easier to study than their underwater counterparts. Standing on the water’s edge at David Bayou, I wondered how the area would look from a kayak.  I posted a message to the Mississippi Kayak Meetup Group. Both Eric and Keigm Richards and their friends responded, sharing their knowledge and boats, showing me parts of the watershed very few people see. Coincidentally, Eric was one of the talented NOAA Ship Pisces builders, and knows everything from the finest detail of an itty bitty kayak skeg, to the gigantic architecture and versatile features of the Pisces.

Here is a slideshow of the one of the most unspoiled, diverse and scenic estuaries I’ve paddled.

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Most of the were taken by Eric.  Notice the changes in vegetation as we travel away from mouth of the Pascagoula River, up the estuary.  The decreasing salinity has a remarkable effect on the flora and fauna of the area.  Mississippians are proud of the Pascagoula, “the last unimpeded river system in the continental United States.” http://ltmcp.org/pascagoula-river-watershed.

DID YOU KNOW?

Most, around 80%, of the creatures in the water column are bio-luminescent, or emit light.  They can vomit out the glowing liquid, hold and release it from a pouch, and/or send it out through photophores (organs like eyes which emit light instead of collecting it).