Liz Harrington: Let’s Go Fishing! August 17, 2013

NOAA Teacher At Sea
Liz Harrington
 Aboard NOAA Ship Oregon II
August 10 – 25, 2013

Mission : Shark/Red Snapper Bottom Longline
Geographical area of cruise: Western Atlantic Ocean and Gulf of Mexico
Date: Aug 17, 2013

Weather: current conditions from the bridge:
Partly cloudy, scattered showers and thunder storms
Lat. 27.19 °N  Lon. 84.38 °W
Temp. 92 °F ( 33.4° C)
Wind speed   10-15 knots
Barometer  30.1 in  (1015 mb)
Visibility  10 mi
Sea temp  83 ° F   (28.8  ° C)

Science and Technology Log

We have arrived at the survey sites, the fishing has begun and I’m having the time of my life! The process is a collaborative effort between the science team and the crew of the ship.  In upcoming blogs I’ll focus on all the different people on board the ship and their roles, but I’d like to first tell you about the fishing from my perspective as part of the science team. The science team consists of four scientists and seven volunteers. We are divided into day shift (noon to midnight) and night shift (midnight to noon). I am assigned to the day shift.

I was told that about a mile of line with 100 hooks would be let out and weighted to stay close to the bottom.  I was interested to see how they could let the line out and haul it back in again without all those hooks getting tangled. Well, I learned that the hooks are removable.  The hooks are attached to one end of a 12 foot section of line. The other end holds a snap. This set up is called a gangion.  The gangions are snapped onto the longline as it is let out and taken off the line as it is reeled in.  They are stored in a very orderly way to avoid tangles, although an occasional tangle does occur.  As the ship is approaching a designated site we prepare for setting the line. This is done from the rear of the ship, called the stern.

gangion
Parts of a gangion
baited gangions
Gangions baited and ready to set

We bait the hooks and decide on job assignments.  The jobs that need to be done while setting the line are “Data” (manning the computer to keep a count of the gangions that are put on the line); “High Flyer” (throwing out the buoys that will mark the beginning and end of the line); “Slinger” (throwing the baited hook over the edge of the ship and holding the other end of the gangion to receive a numbered tag); and “Numbers” (snapping numbered tags on to the gangions).  The weather conditions and the speed of the current must be checked before the final approval is given to set the line.  When the signal is given our team gets to work.

high flyer
Skilled fisherman Chuck Godwin and I get ready to put out the high flyer
High Flyers mark each end of the longline
High Flyers mark each end of the longline
slinging
Lead scientist for this trip, Kristin Hannan, slinging while we set out the line. The bait is Atlantic Mackerel.

After the line is set and the work station is cleaned up (that bait can get a little messy!), a CTD is deployed to gather data on the water – Conductivity (a measure of salinity), Temperature and Depth. The CTD also measures the dissolved oxygen in the water – remember that fish breathe by absorbing oxygen from the water as it runs over their gills.

An hour after the last high flyer is set, the line is hauled in. This is done from the bow (the front deck of the ship). During this part of the process I am full of anticipation as we wait to see what each hook holds. It might be a light catch with a couple of fish or it might be a very busy catch.  When the crew yells “fish on”, the action begins. Anything that is caught is brought on board and data is collected (more on this later). If it is too big to be pulled in, then it is lifted into a cradle and worked on along the side of the ship. The crew will determine if cradling is needed and will shout out “hard hats”, as we all need to be wearing hard hats when the crane is being used to move the cradle. In our first two days of fishing, the day shift has cradled five sharks. It is so exciting to be next to such a big, beautiful creature.

The final step to the fishing process is clean up. Our gear is put away, the deck is hosed down (using salt water, as fresh water is in precious on a ship), numbers are checked for proper order and damaged gangions are repaired. If there were fish caught that require dissection, this would be done now as well. In the meantime, Oregon II steams on to the next survey site.  So, you can see that the ship is a busy place 24 hours a day.

repairing or replacing worn gangions
Members of the day shift science team repair gangions after a recent haul. Foreground- Micayla and Cliff, volunteers. Background – Amy Schmidt, scientist.

Personal Log

I am having so much fun on the Oregon II. The work is really interesting and the people have been fantastic.  Not only has everyone on board been very friendly and helpful, but they have really made me feel like a member of the team. Right from the start we were trained for the various jobs and expected to do them, with lots of help and encouragement always available. I initially thought I’d be more of an observer, but that is not the case at all.  All of the volunteers are actively involved in every aspect of the fishing routine.

sharpnose shark
Here I am taking measurements on a Sharpnose Shark

I find it fascinating that people from all over the country have come together to cross paths here aboard a ship in the Gulf of Mexico. In future blogs I’d like to highlight some of their stories, but for now there is work to be done (although I’m not to the point where I can call this work. It’s way too much fun!)

New Terms

Shark Burn – the abrasion received when a wiggling shark rubs against your skin.

Water Haul – nothing at all is caught during a set.

night shark
Daniel, volunteer, prepares to release a Night Shark
removing hook
Removing a hook from a cradled Sandbar shark
CTD
Micayla and Cliff stabilize the CTD during deployment.
data collection
Micayla logs hook numbers as line is let out.

Kristy Weaver: What’s a Reef Fish Survey? May 30, 2012

NOAA Teacher at Sea
Kristy Weaver
Aboard The R/V Savannah
May 23 – June 1, 2012

Mission: Reef Fish Survey
Location: 44 miles off the coast of Jacksonville, FL
Date: May 30, 2012

Current Weather: 80 degrees and sunny

Science and Technology Log

Today is our last full day at sea.  We have caught about 2,000 fish in the past week!  A lot of them were thrown back into the water because we only need to keep a fraction of them for the reef fish survey.  The fish that we keep are studied by the scientists for a few reasons.

First, every fish we catch is measured and weighed.

David, a fisheries biologist, measures every fish that we catch

Then we have a sheet that tells us which fish we “keep” and which fish we “toss” back into the ocean.

Stephen writes down the length of every fish as David calls out the numbers
After Stephen writes down the length he uses this paper to tell David to keep the fish or toss it back into the ocean
Every fish that we keep gets its own ID number and envelope.

After it gets dark we stop fishing and go inside to the lab to collect information about the fish we caught that day.  Every single fish that we keep gets its own ID number, and gets weighed and measured again.  We write everything down.  These notes are data.

Here I am writing down the length and weight of each fish as Stephen weighs and measures them

When you make observations using your senses you are collecting data too!  Can you think of a time you collected data or made an observation like a scientist?

After we  record the length and weight I give Stephen the envelope and the other scientists come get the fish.

Passing Stephen the envelope for the fish he just measured and weighed
Scientists Jennifer and David take parts of the fish that they will study under a microscope later

Once all of the information is brought back to the scientists at the lab, they look at different parts of the fish using a microscope.  This will tell the scientists three main things…

1) Is the fish a male (boy) or a female (girl)?

2)How old is the fish?

And

3) Are these fish from all different families, or are they all related to each other?

Once the scientists answer these questions, they can decide if its okay for people to go fishing for certain types of fish, or if too many fish are being taken out of the ocean and need to be protected.  Right now fisheries are not allowed to take Red Snapper out of the Atlantic Ocean.  That fish is a very important part of our survey.

Special thanks to Captain Raymond and the crew and of the R/V Savannah and to Zeb, the chief scientist, and his team of scientists for a great experience!

Ok, I got him!  He was heavy!
This Red Snapper nearly knocked me over

Anne Mortimer: Fishing, July 7, 2011

NOAA Teacher at Sea
Anne Mortimer
Onboard NOAA Ship Oscar Dyson
July 4 — 22, 2011 

Mission: Pollock Survey
Geographical area of cruise: Gulf of Alaska
Date: July 7, 2011

Weather Data from the Bridge
Air temperature: 9.53 C, Foggy
Sea temperature: 8.19 C
Wind direction: 145
Wind Speed: 18.73 knots
Barometric pressure: 1013.22 mbar

Science and Technology Log

Last night, we attempted a bottom trawl for walleye pollock. The way scientists know that fish are present is by using acoustic sampling. The centerboard of the ship is set-up with sound emitting and recording devices. When a sound wave is emitted toward the bottom, it will eventually be returned when it hits a fish or the ocean bottom. This is called echo-sounding and has been used by sport & commercial fisherman and researchers for many decades. The sound waves are sent down in pulses every 1.35 seconds and each returned wave is recorded. Each data point shows up in one pixel of color that is dependent on the density of the object hit. So a tightly packed group of fish will show as a red or red & yellow blob on the screen. When scientists see this, they fish!

This echogram shows scientists where fish can be found.

The scientists use this acoustic technology to identify when to put the net in the water, so they can collect data from the fish that are caught. The researchers that I am working with are specifically looking at pollock, a mid-water fish. The entire catch will be weighed, and then each species will be weighed separately. The pollock will all be individually weighed, measured, sexed, and the otolith removed to determine the age of the fish. Similar to the rings on a tree, the otolith can show the age of a fish, as well as the species.

pollock otolith
A pollock otolith.
Pollock otolith in my hand

These scientists aren’t the only ones that rely on technology, the ships navigation systems is computerized and always monitored by the ship’s crew. For scientific survey’s like these, there are designated routes the ship must follow called transects.

globe chart
This chart shows the transects, or route, that the ship will follow.
This chart shows the route (white line) of the ship once fish were spotted. When scientists find a spot that they want to fish (green fish symbol), they call up to the bridge and the ship returns to that area. As the ship is returning, the deckhands are preparing the net and gear for a trawl.

Personal Log

I think that I must have good sea legs. So far, I haven’t felt sick at all, although it is very challenging to walk straight most times! I’ve enjoyed talking with lots of different folks working on the ship, of all ages and from all different places. Without all of the crew on board, the scientists couldn’t do their research. I’ve been working the night shift and although we’ve completed a bottom trawl and Methot trawl, we haven’t had a lot of fish to sort through. My biggest challenge is staying awake until 3 or 4 am!

Did you know?

That nautical charts show depths in fathoms.  A fathom is a unit of measurement that originated from the distance from tip to tip of a man’s outstretched arms. A fathom is 2 yards, or 6 feet.

Species list for today:

Humpback Whale

Northern Fulmar

Tufted Puffin

Stormy Petrel

petrel
Fish biologist Kresimir found this petrel in the fish lab; attracted to the lights it flew inside by accident. The petrel is in the group of birds called the tube-nosed sea birds. They have one or two "tubes" on their beak that helps them excrete the excess salt in their bodies that they accumulate from a life spent at sea.

In the Methot net:

Multiple crab species including tanner crabs

Multiple sea star species, including rose star

Sanddollars

Juvenile fish

Brittle stars

Sponge

Multiple shrimp species including candy striped shrimp

shrimp variety
These are some of the shrimp types that we found in our Methot net tow.

Jason Moeller: June 14-16, 2011

NOAA TEACHER AT SEA
JASON MOELLER
ONBOARD NOAA SHIP OSCAR DYSON
JUNE 11 – JUNE 30, 2011

NOAA Teacher at Sea: Jason Moeller
Ship: Oscar Dyson
Mission: Walleye Pollock Survey
Geographic Location: Gulf of Alaska
Dates: June 14-16, 2011

Personal Log

Welcome back, explorers!

June 14

I think I posted my last log too soon, because as soon as I hit the send button interesting things began to happen. First, I was called up to see some Mountain Goats feeding in the wild! I was able to take a picture of them as well! (Well, kind of…)

goats
The mountain goats were so far away I had to use binoculars just to spot them. If you can spot the two tiny white dots to the right of the snow, that is them! There is also one that is on the left hand side in the middle of the photograph. You will have to take my word for it.

While this was going on, the professional members of the science team were still calibrating the sonar that we are going to use to catch the fish! I have explained the process in the captions of the following photographs.

sonar balls
Calibrating starts with these little balls. The one used to calibrate our sonar was made of Tungsten (like the black ball at the top)
Pole
The ball was suspended underneath the water on three poles, placed in a triangular shape, around the ship. This is a photo of one of the poles.
Screen.
Once the ball was placed underneath the boat, the scientist swept sound waves off of the ball and used the above screen to see where the sound waves were striking the ball and reflecting. This allowed them to adjust the sound waves to hit the ball (or out in the ocean, the fish) exactly where they wanted it. This optimizes the amount of sound coming back to the boat and paints a better picture of what is under the water.

The process took several hours, but once we finished, we headed back out to sea to start the two-day journey towards our first fishing spot!

June 15-16

The most common sight off of the boat for the past two days has been this one.

Water
Water, water, everywhere

We are currently in Unimak Pass, which will lead us to the Bering Sea! Unimak Pass is the fastest sea route from the United States into Asia, and as a result is a common merchant route between Seattle and Japan. It is also the best way to avoid rough seas and bad weather when travelling between the Gulf of Alaska and the Bering Sea, as it receives some cover from the landmass.

The Bering Sea likely needs no introduction, as it is arguably the best crab fishing waters on the planet and is well-known from the television show The Deadliest Catch. Aside from crab, the Bering Sea is teeming with life such as pollock, flounder, salmon, and halibut. As a result of this diverse and tasty biomass, the Bering Sea is an incredibly important area to the world’s fisheries.

Steaming towards our destination has kept us away from any land, but there are still things to do and to see! We did a second dry cast of the net, but this time two different pieces of equipment were tested.

The net
The first piece of equipment was a special net for taking samples. The net has three sections, called codends, which can be opened and closed individually. You can see two of the codends in this photo. On top of the green net, you should see black netting that is lined with white rope. These are the codends.
net 2
This is a better view of the codends. The codends are opened and closed using a series of six bars. When the first bar is dropped, the first codend is able to take in fish. When the second bar is dropped, the codend is unable to take in fish. The bar system has not worked incredibly well, and there is talk of removing one of the codends to make the net easier to use.
camera
The second piece of equipment was this camera, which was attached to the net. It allowed us to see what was coming in the net. Even though this was a dry run and we were not catching anything, I still saw a few Pollock in the camera!

Even though this was a test run and we did not catch any fish, the birds saw the net moving and came to investigate. The remaining photographs for the personal log are of the several species of birds that flew by the boat.

Bird 1
A Northern Fulmar flies alongside the Oscar Dyson
Bird 2
An albatross (by the thin wire just below the spot the water meets the horizon) flies away from the Oscar Dyson
Bird 3
Fulmar's and Gulls wheel about the Oscar Dyson, looking for fish.

Science and Technology Log

This section of the blog will be written after we start fishing for Pollock in the next day or so!

New Species

Mountain Goats

Northern Fulmar

Albatross

Gulls

Reader Question(s) of the Day!

First, I owe a belated shout out to Dr. John, Knoxville Zoo’s IT technician. He lent me the computer that I am currently using to post these logs, and I forgot to mention him in the last post. Thanks Dr. John!

The two questions of the day also come from Kaci, a future Teacher at Sea with NOAA.

1. What is it like sleeping on the boat?

A. Honestly, I am being jostled around quite a bit. Part of this is due to the way the beds are set up. The beds go from port to starboard (or right to left for the landlubbers out there) instead of fore to aft (front to back). This means that when the boat rolls, my feet will often be higher than my head, which causes all of blood to rush to my head. I still haven’t gotten used to the feeling yet.

Part of the jostling, though, is my fault. I had heard that most individuals took the bottom bunks given the option, and since I was one of the first individuals on board, I decided to be polite and give my roommate, who outranked me by some 10-15 years at sea, the bottom bunk. It turns out that the reason people pick the bottom bunk is that the top bunk moves around more since it is higher off the floor. I’ve heard stories about people being thrown from the top bunk in heavy seas as well.

The most comfortable place to sleep has turned out to be the beanbag chair in the common room. It is considered rude to go into your room if your shift ends early, as your roommate may still be sleeping. My shift ended two hours early the other night, so I sat down on the beanbag chair to catch some zs. The ship’s rocking was greatly reduced by the bean bag chair, and I slept very well for the next couple of hours.

2. Is it stressful so far?

A. The only stressful part of the trip so far has been the seasickness, which I have not yet been able to shake. The rest of it has been a lot of fun!