Mary Anne Pella-Donnelly, September 10, 2008

NOAA Teacher at Sea
Mary Anne Pella-Donnelly
Onboard NOAA Ship David Jordan Starr
September 8-22, 2008

Mission: Leatherback Use of Temperate Habitats (LUTH) Survey
Geographical Area: Pacific Ocean –San Francisco to San Diego
Date: September 10, 2008

Weather Data from the Bridge 
Latitude: 3736.6398 N Longitude: 12336.2210 W
Wind Direction: 220 (compass reading) SW
Wind Speed: 11.3 knots
Surface Temperature: 14.638

This moon jelly was captured with the mid-water net.  Its bell was 35.5 cm wide.   The purplish pattern represents the gonads, which the turtles love to eat.
This moon jelly was captured with the mid-water net. Its bell was 35.5 cm wide. The purplish pattern represents the gonads, which the turtles love to eat.

Science and Technology Log

The mid-water net was just deployed.  This is a new net for the research team to use.  On the trip north, during the first part of this cruise, the last net became mangled during use.  A new, larger net was obtained and the crew is working out how best to deploy it.  After three tries, they seem to have determined the best way to lay it out, release it, and winch it back in. The David Starr Jordan is now heading over to the off shore area outside of Point Reyes, where the plan will be to deploy it for only one to two minutes.

The jellyfish there are usually so numerous that they will fill the net immediately.  Leatherbacks eat jellyfish of many kinds, but they love the types in the Pelagiidae family.  These are the types with long hanging arms, which the turtles snack on until they get up into the body cavity. The jellyfish are then eaten from the insides, with a soft-bodied bell left behind. The bell-shaped body of this family can be as large as 55 cm.    The favorite of leatherback, so the one we will hope to find in abundance, is the Sea nettle, Chrysaora fuscescens. These are most numerous in August and September in specific locations off the California coast, so it can be anticipated that leatherbacks will also be found there.  The predictability of this occurrence is the reason leatherbacks have evolved to travel the Pacific Ocean from Asia every year. 

Unidentified songbird, hopping a ride aboard the Jordan.
Unidentified songbird, hopping a ride aboard the Jordan.

The ship, David Starr Jordan, was built in 1965, so is among the oldest of the fleet of NOAA research ships.  The age can be found in the cabinet design, the flooring material and little features. Never the less, it has been built for sustained trips at sea for up to 23 days in length. There is a steward on board who creates elaborate lunches and dinners daily. Last night’s dinner included Filet Mignon, shrimp in butter sauce, two soups, sautéed vegetables, and at least four other hot dishes. There is always a salad bar set up and 24-hour hot beverages, cereal, toast, ice cream, yogurts and fruit. Everyone eats well.

In the crew’s lounge, drawers of over 200 current films are stored, including new releases. They have been converted to 8 mm tape to accommodate the video system on board.  There is also a small gym with a treadmill, stationary bicycle and bow-flex machine.  A laundry room completes the ‘home’ environment. At least three showers are available.  The ship has a system to desalinate water, which is a slow process, so water conservation is suggested.  This means:  wet yourself down, turn off the water, soap up and scrub, then turn the water on and rinse off.  Repeat if necessary. There are no water police, but we all have an interest in enough water being available.

Although the food has looked great, I have found that until I get my ‘sea legs’ I need to stay away from most food.  Yesterday evening, I discovered that the lunch and dinner I ate; did not look as good coming out as it did going down.  Today is better, but I will stick to yogurt, oatmeal, and tea for a bit.

Animals Sighted Today 
Sea nettle jellies Chrysaora fuscescens
Moon jellies Aurelia aurita
Egg yolk jellies Phacellophora camtschatica
Ocean sunfish Mole mole
Humpback whale Megapterea novaeangliae
Blue whale Balaenoptera musculus
Common murre Uria aalge
Black phoebe Sayornis nigricans
Red phalarope Phalaropus fulicaria
Buller’s shearwater Puffinus bulleri
Sooty shearwater Puffinus griseus
Brown pelican Pelecanus occidentalis
Brandt’s cormorant Phalacrocorax penicillatus
Dall’s porpoise Phocoenoides dalli 

Questions of the Day 

  1. What type of data is considered ‘oceanographic’ data?
  2. What types of organisms produce chlorophyll in the ocean?

Mary Anne Pella-Donnelly, September 10, 2008

NOAA Teacher at Sea
Mary Anne Pella-Donnelly
Onboard NOAA Ship David Jordan Starr
September 8-22, 2008

Mission: Leatherback Use of Temperate Habitats (LUTH) Survey
Geographical Area: Pacific Ocean –San Francisco to San Diego
Date: September 10, 2008

Weather Data from the Bridge 
Latitude: 3737.3158 N Longitude: 12337.1670 W
Wind Direction: 234 (compass reading) SW
Wind Speed: 9.7 knots
Surface Temperature: 14.638

Deck crew setting up the mid-water net to be deployed off the back deck.
Deck crew setting up the mid-water net to be deployed off the back deck.

Science and Technology Log 

Two consistent methods of data collection on the survey include netting and collecting oceanographic data. Up to three times a day a mid-water net is carefully dropped off the back, and towed at the surface. The last two times the net has been pulled in one or two moon jellies have been caught. Each specimen is weighed and measured, then tossed back. Every evening, two hours after sunset, a bongo net is deployed off the side of the boat. With weights added, it is designed to drop as far as 300 m below the surface. Since there are two nets collecting, the scientists are able to retrieve and preserve the contents of one, to be analyzed for species composition later, and examine the second here on the boat.  This is done two hours after sunset since many organisms come much closer to the surface after dark, when their predators are less likely to find them.

Another important tool that is used to collect oceanographic data is the CTD.  This CTD has eight chambers and can collect samples from eight different water depths.  It is carefully dropped down to 500 m (or more if needed), and then a chamber is opened at intervals determined by the scientist collecting the samples. Every waking hour the temperature of the ocean is sampled using a XBT “gun” that shoots out a 760 meter long copper wire. XBT stands for Expendable Bathy thermograph. The weighted wire is kept in the ocean until a stable reading is obtained.  This gives an indication of the temperature gradient from the surface down to 760 meters in the immediate area. 

Personal Log 

Two Dall’s porpoise gliding next to the ship.
Two Dall’s porpoise gliding next to the ship.

The first 24 hours were smooth sailing through overcast but calm seas.  We have had two visits by common dolphins who have seen the boat, told their 4 or 5 best buddies, and come over to ‘ride the bow.’ They glide under the surface, leap up through the waves and glide some more.  They are having a blast. The second time was less convenient for the research, since the mid-water net could not be deployed with marine mammals in the area. And the dolphins wouldn’t leave!! So deployments had to wait 45 minutes for the dolphins to get tired and go find another playground. Yesterday a net drop deployment was almost postponed again, for a large pod of white-sided dolphins spotted behind the boat. They swam perpendicular to the ship however, and stayed a good distance away. It was estimated that there were

180 of them! That was it for yesterday. The first afternoon, we saw one humpback whale spouting and then it showed its fluke as it went under.  Another four were seen in the distance. We are all looking forward to more sightings.  The primary job that I and another ship visitor have, is to act as observers up on the flying bridge, one half hour before the net is scheduled to be dropped, and stay until the net is retrieved.  Because of the Marine Mammal Protection Act, all activity that could put these animals at risk must not be done if any marine mammals are in the area. So I sit up on the highest deck, and watch.  There is a walkie-talkie next to me, a computer set to log any sightings of interest, including jellies that float by and high-powered binoculars to scan the surface.  With snacks and beverages always handy in the mess hall, I can be quite cozy.

Animals Seen So Far 
Humpback whale Megapterea novaeangliae
Common dolphin Delphinus delphis
Pacific white-sided dolphin Lagenorhynchus olbiquidens
California Sea lion Zalophus californianus
Moon jelly Aurelia labiata
Egg yolk jelly Phacellophora camtschatica
Sooty shearwater Puffinus griseus
Buller’s Shearwater Puffinus bulleri  

We also have a few lost, confused song birds on board-who are happily eating up insects for us Western tanager Piranga ludoviciana Townsend’s warbler Dendroica townsendi 

Questions of the Day 

  1. What is the purpose of scientific names in international research?
  2. To become a marine scientist, what fields of science are required as background?

Miriam Hlawatsch, August 4, 2007

NOAA Teacher at Sea
Miriam Hlawatsch
Onboard NOAA Ship Nancy Foster
July 29 – August 10, 2007

Mission: Lionfish Survey
Geographical Area: Atlantic Ocean, off the coast of North Carolina
Date: August 4, 2007

On the Bridge, XO LT. Stephen Meador and CO CDR. James Verlaque plot the course for NOAA ship NANCY FOSTER.
On the Bridge, XO LT. Stephen Meador and CO CDR. James Verlaque plot the course for NOAA ship NANCY FOSTER.

Weather Data from the Bridge 
Visibility: 10 miles
Wind Direction: 215º
Wind Speed: 1 knot
Sea Wave Height: 1 ft.
Swell Wave Height: 2-3 ft.
Seawater Temperature: 28.5ºC
Sea Level pressure: 1016.0 mb (millibars)
Cloud Cover: 3-5 oktas, cumulous

Personal Log

While on the Bridge today, Commanding Officer James Verlaque allowed me a brief opportunity to steer the ship and set the course for a new dive location. Activity on the Bridge continues to fascinate me. It takes tremendous attention to detail to keep NANCY FOSTER safe in the water. It is most evident that the success of the scientific mission and the safe efficient operation of the ship are a result of the true spirit of cooperation between the crew and scientists aboard. The fact that everyone (crew and science) shares the mess during meals serves to reinforce the team approach. Certainly, it afforded me an opportunity to get to know many on an individual basis.

NOAA Officers keep NANCY FOSTER safe and on course.
NOAA Officers keep NANCY FOSTER safe and on course.

Science Log

Objective #5: Conduct multi-beam sonar transects using RV NANCY FOSTER at multiple locations.  

NANCY FOSTER is one of a fleet of research and survey vessels used by NOAA to improve our understanding of the marine environment. She is equipped with sonar technology to conduct hydrographic surveys of the sea floor. Chief Scientist Paula Whitfield explains that, for this mission, specialized multi-beam sonar technology is used to create detailed maps of potential dive areas. Habitat mapping is important because it provides specific information that will allow her to make decisions about where to send divers for sampling; otherwise, there could be a great deal of wasted effort, both in terms of time and resources. Multi-beam Bathymetric Sonar is technology that provides detailed, full-coverage mapping of the sea floor using multiple sonar beams (sound waves) in a fan-shaped pattern or swath. The ship goes back and forth in straight lines over a pre-determined area much like a lawn mower goes back and forth over the grass, making sure the entire area has been covered. In addition to habitat mapping, multi-beam hydrographic surveys have many applications such as navigation safety and civil engineering projects.

Example of a Multi-beam swath
Example of a Multi-beam swath
Multi-beam survey results
Multi-beam survey results
NOAA scientists Paula Whitfield and Brian Degan compare bottom topography for dive site selection (left) and hydrographic survey technicians Missy Partyka and Mike Stecher (left).
NOAA scientists Paula Whitfield and Brian Degan compare bottom topography for dive site selection (left) and hydrographic survey technicians Missy Partyka and Mike Stecher (left).

Noah Doughty, September 21, 2006

NOAA Teacher at Sea
Noah Doughty
Onboard Research Vessel Western Flyer
September 18 – 22, 2006

Mission: USS Macon Wreck Archeological Expedition
Geographical Area: California Coast
Date: September 21, 2006

Weather Report from the Bridge
Visibility: Good
Wind direction and speed:  NWxW 24kts
Swell direction and height: NW 6’-8’
Seawater temperature: 55.7oF
Sea level pressure: 1019 millibars
Cloud cover: 2/8

Science and Technology Log 

Work at the USS MACON wreck site continues, alternating between mosaic work and survey work depending on water conditions at the bottom.  Today’s log will profile two members of the expedition whose jobs provide a context for the information being gathered.

Erica Burton works for the Monterey Bay National Marine Sanctuary and is responsible for operating VARS, which stands for Video Annotation and Reference System.  VARS is a database that allows screen images to be captured, logged, and georeferenced with annotated notes. For the MACON expedition these notes list the possible identity of the artifacts. In addition to the captured image, VARS also records the time stamp in the video and a geographical location. All the images and video captured are archived at MBARI (the Monterey Bay Aquarium Research Institute), and later, in conjunction with the National Marine Sanctuary Program, staff will process and interpret to produce a final photo-mosaic poster that will be made available to the public. Burton, who has a background in marine biology, also notes that the USS MACON wreckage provides an artificial hard-bottom habitat in an otherwise soft-bottom habitat, and the organisms observed are primarily soft-bottom fishes with occasional encrusting organisms on the wreckage.

Erica Burton, on the left, operates VARS (Video Annotation and Reference System), and works for the Monterey Bay National Marine Sanctuary. Lee Murai, on the right, is the expedition’s GIS (Geographical Information System) analyst, and comes from Moss Landing Marine Laboratories.
Erica Burton, on the left, operates VARS (Video Annotation and Reference System), and works for the Monterey Bay National Marine Sanctuary. Lee Murai, on the right, is the expedition’s GIS (Geographical Information System) analyst, and comes from Moss Landing Marine Laboratories.

Lee Murai is a Geological Oceanography student at the Moss Landing Marine Laboratories and is the GIS (Geographical Information System) analyst.  Through GIS software he is able to spatially organize the data collected on this expedition and compare it to the 1990 and 1991 expeditions. Types of data collected in the past include side-scan sonar, multi-beam bathymetry, and waypoints collected by Remotely Operated Vehicles (ROVs) and manned submersibles.  For this expedition he is working closely with the Stanford University team to assist with the photomosaic collection procedure. The GIS map posted on day 1 was provided by Murai. Compare that to the low-resolution image tiles posted today.  While the use of GIS is relatively new to the field of marine archeology, it is generally used in marine environments to provide geologic and biologic habitat characterization maps.

This image, created with low-resolution copies of the image files, shows a Curtiss F9C-2 Sparrowhawk (plane #4 in the GIS map on the Day 1 log).  High-resolution tiles will be fused into the final photo-mosaic.  The nose of the plane is in the lower left.
This image, created with low-resolution copies of the image files, shows a Curtiss F9C-2 Sparrowhawk (plane #4 in the GIS map on the Day 1 log). High-resolution tiles will be fused into the final photo-mosaic. The nose of the plane is in the lower left.

Jacquelyn Hams, August 9, 2006

NOAA Teacher at Sea
Jacquelyn Hams
Onboard NOAA Ship Rainier
July 24 – August 11, 2006

Mission: Hydrographic Survey
Geographical Area: Shumagin Islands, Alaska
Date: August 9, 2006

ENS Meghan McGovern on left, and ENS Olivia Hauser on right, RAINIER Junior Officers, looking at unmarked buoy sighted by officers on bridge of the RAINIER
ENS Meghan McGovern and ENS Olivia Hauser, Jr Officers, looking at unmarked buoy sighted on the bridge

Weather 
Weather: Foggy, cloudy
Visibility: 1.5 nm
Wind direction: 130
Wind speed: 6 knots
Swell Waves direction: 260
Swell height: 1-2 ft
Seawater temperature: 11.7 degrees C
Sea level pressure: 1014,9 mb
Temperature dry bulb: 12.8 degrees C
Temperature wet bulb: 12.2 degrees C

Personal Log 

I continue to work on activities that can be incorporated into my classes.  The RAINIER is underway to Seward, Alaska. There is some excitement on the bridge after lunch, when an unmarked buoy is sighted on the port side of the ship. Several officers come to the bridge to observe and the buoy is marked on the chart.  As it turns out, this is not a “find” and was updated on the Notice to Mariners put out by NOAA.

After dinner, fog moves in and the RAINIER sounds the fog horn.  As a sailor, I don’t like fog. I am comforted by the fact that I am aboard a large ship with good radar system to detect approaching ships. The fog begins to lift a little and the last day of the cruise, like the first day, is marked by seeing humpback whales.

If this had truly been a “find”, the buoy would have been penciled in and added by NOAA.
If this had truly been a “find”, the buoy would have been penciled in and added by NOAA.