Laura Guertin: Collecting Data: Icthysticks and Otoliths, June 21, 2023

dead fish laying on measurement board

NOAA Teacher at Sea

Laura Guertin

Aboard NOAA Ship Oscar Dyson

June 10 โ€“ June 22, 2023


Mission: 2023 Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska

Geographic Area of Cruise: Islands of Four Mountains area, to Shumagin Islands area
Location (10:45AM (Alaska Time), June 21): 55o 29.7525โ€ฒ N, 156o 44.7276โ€ฒ W

Data from 10:45AM (Alaska Time), June 21, 2023
Air Temperature: 8.4 oC
Water Temperature (mid-hull): 8.2oC
Wind Speed: 8 knots
Wind Direction: 20 degrees
Course Over Ground (COG): 76 degrees
Speed Over Ground (SOG): 11 knots

Date: June 21, 2023

Once the echo sounder has shown us the position of an aggregation of Alaska walleye pollock (we hope they are pollock and not some other fish species), we lower the trawl net and see what we can catch. This is where the trawl sonar and CamTrawl (see previous blog post) come in handy to give us an idea of what is going into the net. Itโ€™s an amazing coordination of effort between the acoustics lab (who decides where to trawl), the bridge for navigation, and the deck crew for setting/retrieving the haul.

We aim for trawling at the mid-water level, where the pollock are typically found. Pacific Ocean perch (POP, or rockfish) can also be found in the mid-water level in the Gulf of Alaska, especially just off the shelf break. Bottom trawls can yield pollock and other fish (e.g., POP and other rockfish species, various species of flatfish).

Once the trawl net has been brought back on board, the catch is emptied into a bin called a table. There is a door on the side of the table that opens into the fish lab. Once the table door opens, the fish spill into the laboratory where they travel down a conveyor belt for the initial sorting. Our target species is the pollock. We weigh everything that ends up onto the sorting table, either in bulk (by species) or individually.

  • pollock moving along belt
  • pile of dead rockfish
  • dead squid on the deck of a ship

A subset of around 250 pollock are set aside to collect length data. The length of these of each individual pollock are measured on an Ichthystick. This is another invention by Rick Towler and Kresimir Williams (remember the CamTrawl? (see previous blog post)). As described in their article An inexpensive millimeter-accuracy electronic length measuring board, these NOAA scientists describe using magnetic measuring technology that, to millimeter resolution, takes a measurement when you placed a magnet on a sensor that runs the length of the board. For our pollock measurements, we were looking to record the fork length, and a quick placement of the red magnet along the fish tail sends the data to a computer program called CLAMS (Catch Logger for Acoustic Midwater Surveys).

  • green plastic bins containing dead pollock (fish)
  • A close-up view of the end of the measuring board shows the larger sizes on the scale (marked 75, 80, 85). The board's logo reads "Ichthystick" and includes a stylized illustration of a pollock.
  • computer screen with long measuring board
  • illustration of a fish with lines showing the various lengths of measurement. Title: "Measuring Fish Length." labels: "Maximum Standard Length," "Fork Length," and "Maximum Total Length."
  • dead fish laying on measurement board
  • two people in rain gear in a laboratory taking measurements of fish

Another subset of approximately 50 pollock are set aside for additional data collection on individual specimens โ€“ length, weight, sex, maturity, and age. Otoliths (e.g., ear bones) are removed, and sometimes organs are removed and measured (ovaries for maturity development analyses, liver).

a black and white image showing pairs of otoliths from different fish species. Each otolith is white and gray in contrast with the solid black background; lighting reveals the ringed growth pattern
Otolith pairs (two per individual fish) from an assortment of Bering Sea fish species. Walleye pollock is located in the top left. Note: otolith sizes are not on a relative scale. Photo: NOAA Fisheries.

What are otoliths, and why remove them? Otoliths are ear stones, or ear bones, found in fish. To give you an idea of why we remove ear bones, letโ€™s start by thinking about trees and coralsโ€ฆ trees grow a new ring on their structure each year, and corals have differences in their skeletal density between the seasons (both trees and corals are also used to reconstruct past climate conditions (proxy data for paleoclimatology)). By counting the rings on trees and coral, we can calculate the age of that specimen. It turns out that fish also have a way to record their annual growth โ€“ and it occurs in their ear through Fish Otolith Chronologies.

Scientists are very interested in studying otoliths. When otolith data are combined with data on fish size, scientists are able to determine the growth rates of fish, which then combined with the survey work, helps inform annual fish stock assessment reports. We don’t do any of the otolith analyses on the ship, but we do collect the samples with a detailed label and all the corresponding data (fish length, sex, weight, location) that is sent back to the NOAA Fisheries Alaska Fisheries Science Center for analyses and entered into their Fish Otolith Collection Database.

  • Two otoliths in a person's hand
  • close-up view of two otoliths in a person's hand; the growth rings are visible
  • two gloved hands hold up a fish cut open to reveal the otoliths inside the head
  • person holding tweezers and placing object in glass vial

Did you know… More than 30,000 otoliths are read annually by NOAA Fisheries Alaska Fisheries Science Center scientists. So far, the Science Center has collected more than 1.1 million fish otoliths for ageing. (from NOAA Fisheries)


To learn more about the fascinating studies of otoliths and what NOAA Fisheries is doing, check out these websites:

NOAA Fisheries Age and Growth – NOAA Fisheries scientists assess the age and growth rates of fish species and populations to better monitor, assess, and manage stocks. There is also a separate site for Age and Growth Research in Alaska.

NOAA Fisheries Age and Growth Homework: Determining How Old Fish Are

NOAA Fisheries Near-Infrared Technology Identifies Fish Species From Otoliths – NOAA Fisheries scientists are developing ways to use near-infrared spectroscopy (NIRS) analysis of otoliths (fish ear stones) to provide accurate information for sustainable fisheries management faster.

If you are really curious to explore some fish otolith data, check out the Alaska Age And Growth Data Map, an interactive map displays collected specimen information from recent age and growth studies from Alaska Fisheries Science Center.

Screenshot from the Alaska Age and Growth Data Map website. On the left is a map of Alaska with lots of orange, blue, and green circles marking sampling locations. To the right are two graphs plotting lengths (y-axis) against ages (x-axis) for walleye pollock sampled in 2021. Blue circles (or box-and-whisker plots) represent samples from the Western Bering Sea and green circles represent samples from the Eastern Bering Sea.

Laura Guertin: Collecting data: Trawl Sonar and CamTrawl, June 20, 2023

rectangular frame with four orange round balls on top and two eyes on a metal cylinder in the middle

NOAA Teacher at Sea

Laura Guertin

Aboard NOAA Ship Oscar Dyson

June 10 โ€“ June 22, 2023


Mission: 2023 Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska

Geographic Area of Cruise: Islands of Four Mountains area, to Shumagin Islands area
Location (2PM (Alaska Time), June 19): 55o 30.9384โ€ฒ N, 159o 47.6478โ€ฒ W

Data from 2PM (Alaska Time), June 19, 2023
Air Temperature: 8.2 oC
Water Temperature (mid-hull): 6.8oC
Wind Speed: 18 knots
Wind Direction: 62 degrees
Course Over Ground (COG): 30 degrees
Speed Over Ground (SOG): 11 knots

Date: June 20, 2023

To conduct a fisheries survey or any oceanographic research expedition, there’s an enormous checklist of items you need on a ship. Jokingly, those on board will tell you that food and internet access are at the top of the list. But there’s no doubt that technology and its function, application, durability, etc., are critical during the time at sea. For example, see NOAA’s explainers for Ocean Exploration Technology: How Robots Are Uncovering the Mysteries of the Deep and Collecting and Visualizing Deep-Sea Data. For a broader look at the technologies NOAA uses to explore the ocean (vessels and submersibles, observing systems and sensors, communication technologies, and diving technologies), see Exploration Tools.

Leg 2 of this Summer Survey will be bringing on board the DriX, an uncrewed surface vehicle (USV), to see if this technology can improve the efficiency of collecting acoustic and biological data to estimate pollock abundance when working alongside Oscar Dyson. To read more/see a video, check out NOAA’s article, Uncrewed Surface Vehicles Complement NOAA Vessels for More Efficient Fisheries Surveys.


Trawl Sonar

A sonar device (housed in a yellow hard plastic casing marked SIMRAD) sits on deck on a pile of coiled ropes
The Simrad FS70 on the back deck of Oscar Dyson (June 2023)

Trawl sonar units are used to provide a rough estimate of how many fish are going into the trawl net. The device (which we’ve been using on our expedition, a Simrad FS70 nicknamed “the turtle”) is a third wire system that in real time establishes communication between the submerged sonar head and the bridge. On this cruise, the trawl sonar unit is placed on the headrope of the trawl net (i.e., on the top of the mouth of the net). It communicates its depth back to the ship. It also scans the mouth of the net and relays any acoustic images of things going into the net back to the ship. These data allow the scientists and crew to adjust the depth of the net and length of time the trawl net remains in the water to collect samples. Our goal is to collect enough fish (approximately one ton) to have a representative sample of the various species and lengths of fishes in the water column.

Screenshot of the display returned by the FS70 during a trawl. The display is broken into three columns. The rightmost column is a list of settings.
Screenshot of the display returned by the FS70 during a trawl. The pink/yellow/blue line in the left column is where you see the bottom of the net. This is also represented in the middle column by the multi-colored horizontal line you see in the third circle from the center. (Screenshot from Leg 1 provided by Rick Towler).

The Simrad FS70 makes an appearance in the NOAA video Alaska’s Pollock Fishery: A Model of Sustainability. NOAA Ship Bell M. Shimada uses this FS70 trawl sonar unit for Pacific hake acoustic trawl surveys (see article).


CamTrawl

CamTrawl sits on the deck of NOAA Ship Oscar Dyson next to a blue trawl net that hangs down from a huge suspended spool. The CamTrawl consists of a metal frame housing cameras (not very visible) and buoys (more visible).

One fascinating piece of technology we’re using on this pollock survey is the CamTrawl. This article I found will give you everything you would want to know about CamTrawl in a non-technical summary:

–> Developing 3D Stereo Camera Technology to Support Sustainable Fisheries (from NOAA)

Introduced in 2012, the CamTrawl is a stereo camera system when attached to a trawl net, can provide data about fish without ever touching a fish. This 3D imagery records fish passing by the camera towards the codend (the closed end of the trawl net), which provides species and size composition data as well as how fish behave in the trawl net to be collected from within a midwater survey trawl. CamTrawl is used to verify the trawl catch and specimen data, and in some cases, can be used to determine where in the water column the species entered the net. These data help inform ecosystem-based fisheries management.

  • rectangular frame with four orange round balls on top and two eyes on a metal cylinder in the middle
  • trapezoid frame with four orange balls across the top
  • two sketches and a photo of the CamTrawl setup
  • CamTrawl device attached to a trawl net on the deck of a ship

The CamTrawl has uses and applications beyond our walleye pollock survey. It can go to depths of the ocean where it is not possible to lower a trawl net and capture data on other fish species like the bottom-dwelling rockfish. CamTrawl can explore and map deep-sea corals, and there is potential for collaborative research with the fishing industry.

Some CamTrawl footage from Leg 1 of 2023 Summer Survey.

The CamTrawl was developed by NOAA scientists  Kresimir Williams and Rick Towler (both of whom I’m sailing with on Oscar Dyson for Leg 1). I feel incredibly fortunate to have sailed with these two scientists and to hear how NOAA encourages their researchers to be creative and experiment with developing technologies to advance NOAA’s overall mission and expedition objectives.

people around a net removing equipment, while standing on the back of a ship at sea
CamTrawl being detached from a trawl net after a mid-water trawl (June 16, 2023, on Oscar Dyson)

Curious to see more? Check out this Salmon shark caught on CamTrawl underwater camera. Below is a picture of a salmon shark from the Shumagin Islands, Alaska area in February 2017 (photo provided by Sarah Stienessen).

shark seen by an underwater camera

Additional sources for exploration:

Using AI and 3D stereo cameras to support fisheries (National Fisherman, March 12, 2023)

Boldt et al. (2018). Development of stereo camera methodologies to improve pelagic fish biomass estimates and inform ecosystem management in marine waters. Fisheries Research, 198. https://doi.org/10.1016/j.fishres.2017.10.013

Williams et al. (2018). A method for computing volumetric fish density using stereo cameras. Journal of Experimental Marine Biology and Ecology, 508. https://doi.org/10.1016/j.jembe.2018.08.001

Williams et al. (2016). Automated measurements of fish within a trawl using stereo images from a Camera-Trawl device (CamTrawl). Methods in Oceanography, 17. https://doi.org/10.1016/j.mio.2016.09.008

Anne Krauss: The Oregon II Trail, August 16, 2018

NOAA Teacher at Sea

Anne Krauss

Aboard NOAA Ship Oregon II

August 12 – August 25, 2018

ย 

Mission: Shark/Red Snapper Longline Survey

Geographic Area of Cruise: Western North Atlantic Ocean/Gulf of Mexico

Date: August 16, 2018

Weather Data from the Bridge

Conditions at 1106

Latitude: 25ยฐ 17.10โ€™ N

Longitude: 82ยฐ 53.58โ€™ W

Barometric Pressure: 1020.17 mbar

Air Temperature: 29.5ยฐ C

Sea Temperature: 30.8ยฐ C

Wind Speed: 12.98 knots

Relative Humidity: 76%

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Science and Technology Log

Before getting into the technology that allows the scientific work to be completed, itโ€™s important to mention the science and technology that make daily life on the ship safer, easier, and more convenient. Electricity powers everything from the powerful deck lights used for working at night to the vital navigation equipment on the bridge (main control and navigation center). Whether it makes things safer or more efficient, the work weโ€™re doing would not be possible without power. Just in case, several digital devices have an analog (non-electronic) counterpart as a back-up, particularly those used for navigation, such as the magnetic compass.

 

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To keep things cool, large freezers are used for storing bait, preserving scientific samples, and even storing ice cream (no chumsicles for dessertโ€”theyโ€™re not all stored in the same freezer!). After one particularly sweltering shift, I was able to cool off with some frozen coffee milk (I improvised with cold coffee, ice cream, and milk). More importantly, without the freezers, the scientific samples weโ€™re collecting wouldnโ€™t last long enough to be studied further back at the lab on land.

Electricity also makes life at sea more convenient, comfortable, and even entertaining. We have access to many of the same devices, conveniences, and appliances we have at home: laundry machines, warm showers, air conditioning, home cooked meals, a coffee maker, TVs, computers with Wi-Fi, and special phones that allow calls to and from sea. A large collection of current movies is available in the lounge. During my downtime, Iโ€™ve been writing, exploring, enjoying the water, and learning more about the various NOAA careers on board.

To use my computer, I first needed to meet with Roy Toliver, Chief Electronics Technician, and connect to the shipโ€™s Wi-Fi. While meeting with him, I asked about some of the devices Iโ€™d seen up on the flying bridge, the top deck of the ship. The modern conveniences on board are connected to several antennae, and Roy explained that I was looking at important navigation and communication equipment such as the shipโ€™s GPS (Global Positioning System), radar, satellite, and weather instrumentation.

I was also intrigued by the net-like item (called a Day Shape) that communicates to other ships that we are deploying fishing equipment. This lets nearby ships know that the Oregon II has restricted maneuverability when the gear is in the water. At night, lights are used to communicate to other ships. Communication is crucial for safety at sea.

When I stopped by, Roy had just finished replacing some oxygen sensors for the CTD (that stands for Conductivity, Temperature, and Depth). For more information about CTDs click here: https://oceanexplorer.noaa.gov/facts/ctd.html

Without accurate sensors, itโ€™s very difficult for the scientists to get the data they need. If the sensors are not working or calibrated correctly, the information collected could be inaccurate or not register at all. The combination of salt water and electronics poses many interesting problems and solutions. I noticed that several electronic devices, such as computers and cameras, are built for outdoor use or housed in durable plastic cases.

On this particular day, the ship sailed closer to an algal bloom (a large collection of tiny organisms in the water) responsible for red tide.ย Red tide can produce harmful toxins, and the most visible effect was the presence of dead fish drifting by. As I moved throughout the ship, the red tide was a red hot topic of conversation among both the scientists and the deck department. Everyone seemed to be discussing it. One scientist explained that dissolved oxygen levels in the Gulf of Mexico can vary based on temperature and depth, with average readings being higher than about 5 milligrams per milliliter. The algal bloom seemed to impact the readings by depleting the oxygen level, and I was able to see how that algal bloom registered and affected the dissolved oxygen readings on the electronics Roy was working on. It was fascinating to witness a real life example of cause and effect. For more information about red tide in Florida, click here: https://oceanservice.noaa.gov/news/redtide-florida/

Chief Electronics Technician Roy Toliver in his office on the Oregon II.
Chief Electronics Technician Roy Toliver in his office on the Oregon II. The office is like the shipโ€™s computer lab. When heโ€™s not working on the shipโ€™s electronics, Roy enjoys reading out on the stern. It’s a great place for fresh air, beautiful views, and a good book!

Personal Log

Preparing and packing for my time on the Oregon II reminded me of The Oregon Trail video game. How to pack for a lengthy journey to the unfamiliar and unknown?

A video game screenshot
I had a hard time finding bib overalls and deck boots at the general store.

I didnโ€™t want to run out of toiletries or over pack, so before leaving home, I tracked how many uses I could get out of a travel-sized tube of toothpaste, shampoo bottle, and bar of soap, and that helped me to ration out how much to bring for fifteen days (with a few extras, just in case). The scientists and crew of the Oregon II also have to plan, prepare, and pack all of their food, clothing, supplies, tools, and equipment carefully. Unlike The Oregon Trail game, I didnโ€™t need oxen for my journey, but I needed some special gear: deck boots, foul weather gear (rain jacket with a hood and bib overalls), polarized sunglasses (to protect my eyes by reducing the sunโ€™s glare on the water), lots of potent sunscreen, and other items to make my time at sea safe and comfortable.

I was able to anticipate what I might need to make this a more efficient, comfortable experience, and my maritime instincts were accurate. Mesh packing cubes and small plastic baskets help to organize my drawers and shower items, making it easier to find things quickly in an unfamiliar setting.

berths on ship show blue privacy curtains
This is where we sleep in the stateroom. The blue curtains can be closed to darken the room when sleeping during the day. On the left is a sink.

My own shark cradle
Reading and dreaming about sharks!

Dirt, guts, slime, and grime are part of the job. A bar of scrubby lemon soap takes off any leftover sunscreen, grime, or oceanic odors that leaked through my gloves. Little things like that make ship life pleasant. Not worrying about how I look is freeing, and I enjoy moving about the ship, being physically active. It reminds me of the summers I spent as a camp counselor working in the woods. The grubbier and more worn out I was, the more fun we were having.

The NOAA Corps is a uniformed service, so the officers wear their uniforms while on duty. For everyone else, old clothes are the uniform around here because the work is often messy, dirty, and sweaty. With tiny holes, frayed seams, mystery stains, cutoff sleeves, and nautical imagery, I am intrigued by the faded t-shirts from long-ago surveys and previous sailing adventures. Some of the shirts date back several years. The well-worn, faded fabric reveals the ownerโ€™s experience at sea and history with the ship. The shirts almost seem to have sea stories to tell of their own.

Sunset over water showing orange, pink, and blue hues.
As we sail, the view is always changing and always interesting!

Being at sea is a very natural feeling for me, and I havenโ€™t experienced any seasickness. One thing I didnโ€™t fully expect: being cold at night. The inside of the ship is air-conditioned, which provides refreshing relief from the scorching sun outside. I expected cooler temperatures at night, so I brought some lightweight sweatshirts and an extra wool blanket from home. On my first night, I didnโ€™t realize that I could control the temperature in my stateroom, so I shivered all night long.

A folded grey hooded sweatshirt
Itโ€™s heavy, tough, and grey, but itโ€™s not a shark!

My preparing and packing didnโ€™t end once I embarked (got on) on the ship. Every day, I have to think ahead, plan, and make sure I have everything I need before I start my day. This may seem like the least interesting aspect of my day, but it was the biggest adjustment at first.

To put yourself in my shoes (well, my deck boots), imagine this:

Get a backpack. Transport yourself to completely new and unfamiliar surroundings. Try to adapt to strange new routines and procedures. Prepare to spend the next 12+ hours working, learning, exploring, and conducting daily routines, such as eating meals. Fill your backpack with anything you might possibly need or want for those twelve hours. Plan for the outdoor heat and the indoor chill, as well as rain. If you forgot something, you canโ€™t just go back to your room or run to the store to get it because

  1. Your roommate is sleeping while youโ€™re working (and vice versa), so you need to be quiet and respectful of their sleep schedule. That means you need to gather anything you may need for the day (or night, if youโ€™re assigned to the night watch), and bring it with you. No going back into the room while your roommate is getting some much-needed rest.
  2. Land is not in sight, so everything you need must be on the ship. Going to the store is not an option.

Just some of the items in my backpack: sunscreen, sunglasses, a hat, sweatshirt, a water bottle, my camera, my phone, my computer, chargers for my electronics, an extra shirt, extra socks, snacks, etc.

I am assigned to the day watch, so my work shift is from noon-midnight. During those hours, I am a member of the science team. While on the day watch, the five of us rotate roles and responsibilities, and we work closely with the deck crew to complete our tasks. The deck department is responsible for rigging and handling the heavier equipment needed for fishing and sampling the water: the monofilament (thick, strong fishing line made from plastic), cranes and winches for lifting the CTD, and the cradle used for safely bringing up larger, heavier sharks. In addition to keeping the ship running smoothly and safely, they also deploy and retrieve the longline gear.

A pulley in front of water
Pulleys, winches, and cranes are found throughout the boat.

Another adjustment has been learning the routines, procedures, and equipment. For the first week, itโ€™s been a daily game of What-Am-I-Looking-At? as I try to decipher and comprehend the various monitors displayed throughout the ship. I follow this with a regular round of Now-What-Did-I-Forget? as I attempt to finesse my daily hygiene routine. The showers and bathroom (on a ship, itโ€™s called the head) are down the hall from my shared stateroom, and so far, Iโ€™ve managed to forget my socks (day one), towel (day two), and an entire change of clothes (day four). With the unfamiliar setting and routine, itโ€™s easy to forget something, and Iโ€™m often showering very late at night after a long day of work.

Showers and changing stalls on ship
Iโ€™m more than ready to cool off and clean up after my shift.

One thing I never forget? Water. I am surrounded by glittering, glistening water or pitch-black water; water that churns and swells and soothingly rocks the ship. Swirling water that sometimes looks like ink or teal or indigo or navy, depending on the conditions and time of day.

Another thing Iโ€™ll never forget? This experience.

A water bottle in the sun
In case I forget, the heat of the sun reminds me to drink water all day long.

Did You Know?

The Gulf of Mexico is home to five species, or types, or sea turtles: Leatherback, Loggerhead, Green, Hawksbill, and Kempโ€™s Ridley.

Recommended Reading

Many of my students have never seen or experienced the ocean. To make the ocean more relevant and relatable to their environment, I recommend the picture book Skyfishingย written by Gideon Sterer and illustrated by Poly Bernatene. A young girlโ€™s grandfather moves to the city and notices thereโ€™s nowhere to fish. She and her grandfather imagine fishing from their high-rise apartment fire escape. The โ€œfishโ€ they catch are inspired by the vibrant ecosystem around them: the citizens and bustling activity in an urban environment. The catch of the day: โ€œFlying Litterfish,โ€ โ€œLaundry Eels,โ€ a โ€œConstructionfish,โ€ and many others, all inspired by the sights and sounds of the busy city around them.

The book could be used to make abstract, geographically far away concepts, such as coral ecosystems, more relatable for students in urban, suburban, and rural settings, or as a way for students in rural settings to learn more about urban communities. The young girlโ€™s observations and imagination could spark a discussion about how prominent traits influence speciesโ€™ common names, identification, and scientific naming conventions.

The cover of the book Skyfishing
Skyfishing written by Gideon Sterer and illustrated by Poly Bernatene (Abrams Books for Young Readers, 2017)

ย 

Lee Teevan: The Unexpected Happens, July 13, 2018

NOAA Teacher at Sea

Lee Teevan

Aboard NOAA Ship Oscar Dyson

July 1-10, 2018

Mission: Acoustic Pollock-Trawl

Geographic Area of Cruise: eastern Bering Sea

Date: 13 July 2018

View of the Oscar Dyson on our last morning in Dutch Harbor, AK
View of the Oscar Dyson on our last morning in Dutch Harbor, AK

 

Weather Data from Norfolk, VA

Latitude: 36.8508ยฐ N

Longitude: 76.2859ยฐ W

Tide Heights: 2.76 ft & 3.35 ft

Wind Speed: 19 km/h

Wind Direction: NE

Air Temperature: 28ยฐC, 82ยฐF

Barometric Pressure: 1028.1 mb

Sky: Clear

Humidity: 76%

โ€œIf youโ€™re awake at 6:00 a.m., youโ€™ll get to see the Oculus as I prepare it to glide around in the Bering Sea!โ€ย  With this promise from Dr. Chris Bassett, I made sure I was ready at the appointed time on our last day on the ship.

Dr. Chris Bassett preparing the Oculus.
Dr. Chris Bassett preparing the Oculus.

The launching of the Oculus was not on Chrisโ€™ schedule for that day beforehand; our expedition was ending earlier than expected.ย  That setback, however, did not diminish the drive to pursue science.ย  The resilience and perseverance of the science team to readjust was apparent.ย  Through the mist ofย  disappointment, the scientists continued to do as much as possible to continue our mission of the pollock survey.

ย 

Science and Technology Log

Developed at Pacific Marine Environmental Laboratory in partnership with the University of Washington’s Joint Institute for the Study of the Atmosphere and Ocean and the University of Washington Seaglider Fabrication Lab, the Oculus is an ocean glider which samples abiotic factors in the ocean such as temperature, salinity and dissolved oxygen at different depths.

Inner component of the Oculus which regulates buoyancy.
Inner component of the Oculus which regulates buoyancy.

After setting the Oculus upright, Chris connected it via the Internet to a computer operated by a scientist at the University of Washington.ย  This scientist is going to be sending coordinates to the Oculus and guiding it at various depths in the Bering Sea.ย  Chris explained that the Oculus has the ability to adjust its buoyancy quickly and is able to carry out a more reliable survey than other gliders. ย Through the data remotely sent by the Oculus, scientists can gather a more accurate picture of ocean dynamics such as water column layers and ocean mixing.

Unfortunately, I was not able to observe the launch of the Oculus as I had to leave for the airport.

Personal Log

View from dock in Dutch Harbor, AK.
View from dock in Dutch Harbor, AK.

The week I spent on the ship was a whirlwind of experiences. I was just hitting my stride being completely awake for my 4:00 a.m. to 4:00 p.m. work shift and efficiently measuring the length of the pollock in each trawl.

Pollock and jellyfish in trawl.
Pollock and jellyfish in trawl.

At the end of the last trawl, I held a pollock, out of its element of water. Its dense, streamlined body shimmered with iridescence.ย  One eye stared, unfocused on the strange surroundings.ย  ย I too would be out of my element were it not for the 208.6 ft. boat on which I was standing.ย  Being on the boat was a constant reminder that my species is alien to this ocean habitat and that to explore it, we have to use technology such as the Oculus, underwater cameras, and acoustic technology as well as physical trawls.ย  Together, these different means of exploring combine information so that we can evaluate our interactions with the ocean and its inhabitants.

The view of the horizon from the deck of the Oscar Dyson.
The view of the horizon from the deck of the Oscar Dyson.

At times, the ocean had a disorienting effect.ย  When on the deck, I looked out from all directions and saw nothing but ocean capped by a dome of stratus clouds.ย  Under this lid of heavy clouds, the sun gave no clue to discern our direction or time of day.

Marine Careers

Karla Martinez, Junior Unlicensed Engineer, on duty on the Oscar Dyson.
Karla Martinez, Junior Unlicensed Engineer, on duty on the Oscar Dyson.

With her philosophy of focusing on the positive, Karla Martinez enjoys her time on and off duty on the Oscar Dyson.ย  As a Junior Engineer, Karla is responsible for ship upkeep and repairs.ย  On our last day of the trip, I spoke to her as she changed air filters in all of the staterooms.ย  Karla began working as a NOAA Junior Engineer three years ago after seven years in the U.S. Navy.ย  Since working for NOAA, she has traveled extensively and makes sure she visits each place the Oscar Dyson docks.ย  Karla is on the ship for at least 7-8 months of the year, and she makes the ship feel like home by getting to know people.

Karla Martinez, Tourist, off duty in field of flowers, Unalaska, AK.
Karla Martinez, Tourist, off duty in field of flowers, Unalaska, AK.

For young people who are interested in a career like Karlaโ€™s, she advises asking many questions and studying technology as much as possible. In high school, students should take the ASVAP test before entering the military.ย  Once admitted to the military, students should get trained. Karla states that students should talk to their counselors and find out all they can.

Jennifer Dean: Extra Operations and Daily Duties, May 19, 2018

NOAA Teacher at Sea

Jennifer Dean

Aboard NOAA Ship Pisces

May 12 – May 24, 2018

Mission: Conduct ROV and multibeam sonar surveys inside and outside six marine protected areas (MPAs) and the Oculina Experimental Closed Area (OECA) to assess the efficacy of this management tool to protect species of the snapper grouper complex and Oculina coral

Geographic Area of Cruise:ย Continental shelf edge of the South Atlantic Bight between Port Canaveral, FL and Cape Hatteras, NC

Date:ย May 19, 2018

Weather from the Bridge
Latitude: 29ยฐ55.8590โ€™ N
Longitude: 80ยฐ16.9468โ€™ W
Sea Wave Height: 2-4 feet
Wind Speed: ย 18.1 knots
Wind Direction: 210.6ยฐ
Visibility: ย 1 nautical mile
Air Temperature: 25.3ยฐC
Sky: Overcast

Science and Technology Log

Extra Operations- Zodiac Hurricane Fast Rescue Boat:
Occasionally these Fast Rescue Boats are used for more than real emergencies and drills, practicing the pick-up of a man-overboard and rescue diver missions, in the case of day 2 of my trip on NOAA Ship Pisces, a camera replacement part became necessary.ย  When a small crew change is needed or to pick up a repair part for an essential item, instead of bringing the ship to dock, the FRB (Fast Rescue Boat)ย  is sent in.

coxswain
Lead Fishermen, Farron โ€œJuniorโ€ Cornell was the FRB coxswain (driver/operator of a shipโ€™s boat

The LF or Lead Fishermen, ย Farron โ€œJuniorโ€ Cornell was the FRB coxswain (driver/operator of a shipโ€™s boat).ย  His navigation skills were developed by working in the hydrographic division that performs regular bathymetry readings using these vessels on NOAA Ship Thomas Jefferson, making him a very capable pilot of this small watercraft in the NOAA fleet.ย  The FRB has seating for 6, with 2 aft of console, 1 forward of engine cover, 2 sitting on foredeck on engine cover and 1 prone on deck by stretcher.

Some other specs on the boat includes the following:
Length overall=6.81 meters including jet
Beam overall=2.59 meters
Fuel capacity=182 litres (48 US Gal)
Bollard Pull ~600 kg/5884 N
Endurance (hours @ 20 knots)~6.75 hours
Maxย  Horse Power=235kW, 315 hp
At Light Load Operation Displacement =ย 2150 kg/4750 lbs
Full Speed ~32 knots
Fuel System =48 US gallon tank

 

Engine Room Tour Pictures and Learnings:

Daily Duties: Freshwater NeedsReverse Osmosis and Evaporators
Freshwater is necessary for a variety of reasons beyond drinking water for the crew.ย  It is used for laundry, cooking, showers and on NOAA Ship Pisces, to fill the ballast water tanks.ย  Approximately 31 gallons of freshwater is used on average per person per day, with 29 people on board for 12 days, totaling nearly 11,000 gallons by the end of the trip.ย ย  One method to supply this freshwater supply is through reverse osmosis.ย  Osmosis is the diffusion of water across a membrane.

 

Normally water moves, without an energy input from high to low concentrations.ย  In reverse osmosis, water is moved in the opposite direction of its natural tendency to find equilibrium.ย  The force at which water wants to move through the membrane is called its osmotic pressure.ย  To get water to move against the osmotic pressure another force must be applied to counteract and overcome this tendency.ย  Sea water is found in abundance and can be forced across a semi-permeable membrane leaving the ions on one-side and the freshwater to be collected into containment chambers on the other side.ย  Technology has impacted this process by discoveries of better semi-permeable membranes that allow for faster and larger amounts of sea-water to be moved through the system.ย  Pisces uses reverse osmosis and a back-up freshwater system of 2 evaporators.ย  When the temperatures are high (as they were in the first few days of the cruise) the evaporators are the go-to system and make for tasty drinking water.

Evaporators take in sea water and distill the liquid water using waste heat collected from the engines that raises the temperature of water in the pipes.ย  This temperature provides the energy that forces the liquid freshwater to vaporize and enter its gaseous phase, then under pressure this vapor is condensed and can be collected and separated from the brine that is removed and discharged.

 

Wastewater:ย  There are different types of water that can be used for different tasks aboard a ship.ย  Typically gray water (which is relatively clean wastewater from showers and sinks but may contain soaps, oils, and human hair/skin) ย is placed in the MSD (Marine Sanitation Device), which is similar to a septic system.ย  Black water is wastewater from toilets, or any water that has come into contact with fecal matter and may carry potential disease carrying pathogens. Black water is also treated in the MSD.ย  This black water sewage is first subjected to a macerator pump that breaks the fecal matter into smaller pieces, enzymes are added to further decompose and before disposal a bit of chlorine is added to ensure no bacteria remain alive.ย  This water can be disposed of into the ocean if the ship is over 12 miles offshore.ย  If the ship is within 12 miles the sewage must be either stored in containment system on board the vessel or taken to dock and disposed of by an in-shore treatment facility. For more information on the regulations for wastewater disposal while at sea see the ย Ocean Dumping Act.

Valves for ballast water tanks
Valves for ballast water tanks on NOAA Ship Pisces that are filled with freshwater to prevent the spread of nonnative species

Ballast Water and New Regulations: ย Ballast water tanks are compartments used to hold water to provide stability for the ship.ย  This balance is necessary for better maneuverability and improved propulsion through the water.ย  It can allow the crew to compensate and adjusts for changes in the ships cargo load or fuel/water weight changes over the course of a trip.ย  Historically this water has been drawn up from the surrounding sea water to fill the tanks.ย  Unfortunately, in the not so distant past, the ballast water from one location on the globe has been deposited into another area along with it, all of it foreign plants, animals and microbiota.ย  This act led to the introduction of a host of exotic and non-native species to this new area, some of which became invasive and wreaked havoc on the existing ecosystems.ย  Today there are a host of case studies in my studentsโ€™ textbook like the Zebra Mussels (Dreissena polymorpha) and the European Green Crabs (Carcinus maenas) that were introduced in this way that resulted in devastating impacts both environmentally and economically to the invaded area.

The International Maritime Organization (IMO) passed new regulations in September of 2017 calling for better management of this ballast water exchange.ย  Ballast Water Management Convention 2017.

Another high tech approach to this problem has been the development of a sea-water filtration systems, but these carry a heavy price tag that can range anywhere from ย $750,000 to $5 million.

The engine room area is staffed by 7 crew members.ย ย Back-up systems and ย the amount of en route repair necessary to keep the ship running and safe was apparent in the engine room.ย  There were redundancies in the engines, HVAC, hydraulics, and fuel systems.ย  Spare parts are stored for unexpected breaks or other trouble-shooting needs.ย  The control panels throughout the tour had screens that not only allowed a check of every level of function on every system on the ship, there was another screen that demonstrated the electrical connections on how all these monitoring sensors were wired, in case a reading needed to be checked back to its source.

Engine 4
One of the 4 NOAA Ship Pisces CAT engines

Pictured here is a diesel engine on NOAA Shipย Pisces. Pisces has 4 of these on board: 2 bigger engines that are CAT model 3512 vs. 2 smaller engines that are CAT 3508. When the ship is going at full steam they use 3 of 4 to provide power to turn the shaft, and when they need less power, they can modify their engine choices and power, therefore using less fuel.ย  CAT engines are models 3512 and 3508 diesel driven at provide 1360 KW and 910 KW, respectively.ย  There is also an emergency engine (CAT model 3306) on board as well providing 170 kw of power.

Control panels in engine room
Control panel of screens for monitoring and controlling all mechanical and tank/fluid functions

 

hydraulics
Steven Clement, first assistant engineer, is showing me some of the hydraulics in the engine room.

The pressurized fluid in these pipes are used to move devices.ย  Pisces is in the process of converting certain hydraulic systems to an organic and biodegradable โ€œgreenโ€ oil called Environmentally Acceptable Lubricants (EALs).

The Bridge

panopic bridge
NOAA Ship Pisces’ Bridge

This area is command central.ย  I decided to focus on only a few features for this blog from a handful of screens found in this room that monitor a variety of sensors and systems about both the ships conditions and the environmental factors surrounding the ship.ย ย  Commanding Officer CDR Nicholas Chrobak, NOAA demonstrated how to determine the difference on the radar screen of rain scatter vs. another vessel. ย In the image the rain gives a similar color pattern and directionality, yet the ship appeared more angular and to have a different heading then those directed by wind patterns.ย  When clicking on the object or vessel another set of calculations began and within minutes a pop-up reading would indicate characteristics such as CPA (closest point of approach) and TCPA (Time of Closest Point Approach) as seen in the image.

 

These safety features let vessels avoid collisions and are constantly being calculated as the ship navigates.ย  GPS transponders on the ships send signals that allow for these readings to be monitored.ย ย  ย ECDIS (Electronic Chart Display and Information System) charts provide a layered vector chart with ย information about the surrounding waters and hazards to navigation.ย  One screen image displayed information about the dynamic positioning system.

ECDIS
ECDIS (Electronic Chart Display and Information System)

Paths and positions can be typed in that the software then can essentially take the wheel, controlling main propulsion, the bow thruster and rudder to keep the ship on a set heading, and either moving on a desired course or hold in a stationary position.ย  These computer-based navigation systems integrate GPS (Global Positioning System) information along with electronic navigational charts, radar and other sailing sensors to ensure the ship can navigate safely while effectively carrying out the mission at hand.

The Mess Deck and Galley:

This location serves up delicious and nutritious meals.ย  Not only do the stewards provide the essential food groups, they provide vegetarian options and make individual plates for those that may miss a meal during shift work.

mess deck
The mess

Dana Reid, who I interviewed below, made me some amazing omelets on the trip and had a positive friendly greeting each time I saw him. I decided a few days into the cruise to start taking pictures of my meals as proof for the nature of how well fed the crew is on these adventures.

 

 

dana and ray
Steward CS Ray Mabanta and 2C Dana Reid in the galley of NOAA Ship Pisces

Each day a new screen of menus appeared on the shipโ€™s monitors, along with other rotating information from quotes, to weather to safety information.

Personal Log

Today a possible shipwreck is evident on the sonar maps from the previous nightโ€™s multibeam readings.ย  If weather permits, the science team plans to check out the unknown structure en route to the next MPA. This scientific study reminds me of one of the reasons I fell in love with science.ย  There is that sense of discovery.ย  Unlike pirates and a search for sunken gold, the treasure to be found here is hopefully a diversity of fish species and thriving deep coral communities.ย  I found myself a bit lost during the discussions of fishing regulations for these areas designated as MPAs (Marine Protected Areas). ย I had always thought โ€˜protectedโ€™ would mean prohibitive to fishing.ย  ย So I did a little research and will share a little of the basics learned.ย  And I hope someday these regulations will become more restrictive in these fragile habitats.

The MPA , โ€œmarine protected areaโ€ ย definition according to the implementation of an Executive Order 13158 is โ€œ…any area of the marine environment that has been reserved by federal, state, territorial, tribal, or local laws or regulations to provide lasting protection for part or all of the natural and cultural resources therein.โ€ But what that actually means in terms of the size of the area and approach to conservation, or the level protection and the fishing regulations seems to vary from location to location. ย The regulations are governed by a variety of factors from the stakeholders, agencies and scientists to the population numbers and resilience of the habitat to distances offshore.
For more information on MPAs visit
https://oceanservice.noaa.gov/facts/mpa.html

Did You Know?
Some species of coral, like Ivory Tree Coral, Oculina varicosa, can live without their zooxanthellae.

Oculina varicosa
Oculina varicosa

Very little is known about how they do this or how their zooxanthellae symbiotic partners return to their coral home after expulsion.

Fact or Fiction?
Oculina varicosa can grow to up to 10 feet high and have a growth rate of ยฝ inch per year. Check out the scientific validity of this statement at one of the following links:

http://www.sms.si.edu/irlspec/oculin_varico.htm

Whatโ€™s My Story? Dana Reid
The following section of the blog is dedicated to explaining the story of one crew member on Pisces.

Dana in scullery
Dana Reid pictured here in the scullery, the shipโ€™s kitchen area for cleaning dishes

What is your specific title and job description on this mission?ย  Second Cook. His job description includes assisting the Chief Steward in preparing meals and maintaining cleanliness of the galley (kitchen), mess deck (tables picture where crew eats), scullery (part of the kitchen where dishes get washed) fridge/freezer and storage areas.

How long have you worked for NOAA?ย  5th year

What is your favorite and least favorite part of your job? His favorite part of this job is getting a chance to take care of people, putting a smile on peopleโ€™s faces and making them happy.ย  His least favorites are tasks that involve standing in the freezer for extended periods of time to stock and rotate foods.ย  In addition he mentioned that he isnโ€™t too fond of waking up very early in the morning.

When did you first become interested in this career and why?ย  His initial food as a career-interest started when he was in high school working for Pizza Hut.ย  He later found himself working for 2 years cooking fried chicken for Popeyes.ย  His interest in the maritime portion of his career also began right after high school when he joined the Navy.ย  In the Navy he worked in everything from the galley to a plane captain and jet mechanic.ย  During his time in the Navy he worked on 5 different carriers and went on 9 different detachments including Desert Storm. After hurricane Katrina in 2006 he found himself interested in finding another job through government service and began working on a variety of NOAAโ€™s vessels.

What is one of the most interesting places you have visited?ย  He found the culture and terrain of Oahu one of his most interesting.ย  He enjoys hiking and Hawaii, Alaska and Seattle have been amazing places to visit.

Do you have a typical day? Or tasks and skills that you perform routinely in this job? He spends the majority of his time preppingย  (washing and chopping) ย vegetables and a majority of his time washing dishes.ย  In addition he is responsible for keeping beverages and dry goods stocked.ย 

Questions from students in Environmental Science at Camas High School

  • How is cooking at sea different from cooking on land?
    He said that he needs to spend more effort to keep his balance and if in rough weather the ship rocks. This impacts his meal making if he is trying to cook an omelet and if mixing something in keeping the bowl from sliding across the prep table.ย  He mentioned that occasionally when baking a cake that it might come out lopsided depending upon the angle of the ship and timing of placement in the oven.
  • What do you have to consider when planning and cooking a meal?
    He plans according to what meal of the day it is, breakfast, lunch or dinner.ย  The number of people to cook for, number of vegetarians and the part of the world the cruise is happening in are all factored in when planning and making meals. For example, when he has been in Hawaii heโ€™d consider cooking something more tropical โ€“ cooking with fish, coconut and pineapple; if in the Southeast they tend to make more southern style cooking, sausage/steak lots of greens; if in the Northeast more food items like lobster and clam chowder make their way onto the menu.
  • What is the best meal you can make on the ship, and what is the worst? He said he makes a pretty good Gumbo. He said one of his weakness is cooking with curry and said that the Chief Steward is more skilled with dishes of that flavor.
  • How many meals do you make in a day? 3; In addition he hosts occasional special events like ice cream socials, banana splits or grilling party with smoker cooking steaks to hamburgers on the back deck.

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