Patty McGinnis: Let’s Go Trawling! May 24, 2013

NOAA Teacher at Sea
Patty McGinnis
Aboard R/V Ocean Starr
May 20 – 29, 2013

Mission: Juvenile Rockfish Survey
Geographical Area of Cruise: Gulf of Farallones
Date: Friday, May 24, 2013

Weather Data from the Bridge
Latitude: 37 ° 41.2’  N
Longitude: 122 ° 52.0’ W
Air Temperature: 10.5 Celsius
Wind Speed:  24 knots with gusts as high as 30 knots
Wind Direction: NW
Surface Water Temperature: 9.11 Celsius
Weather conditions: mostly cloudy

Science and Technology Log

Last night was my first night of actual work; work that is a challenge given the fact that the boat is moving constantly. There are quite a few tasks that the scientists hope to accomplish over the next week. They will be periodically be deploying a unit called the CTD. The CTD is a carousel that samples for conductivity/salinity temperature, and depth, at a continuous rate as it is lowered from the craft towards the bottom of the ocean floor. The unit transmits data to a computer program which in data analysis and for calibrating the instruments on the CTD itself.

This machine is called a CTD and measures conductivity, temperature, and depth
This machine is called a CTD and measures conductivity, temperature, and depth

The CTD also holds bottles are “fired” at various depths for the purpose of capturing a sample of sea water. The first of these occurs at the lowest point, which is approximately at 10-20 meters above the sea floor. The second bottle fires at the point at which the highest chlorophyll concentration was measured as the CTD made its way to the bottom. This chlorophyll max indicates the productivity created by photosynthetic organisms. The last bottle is fired at five meters below the surface. Water from the bottles is filtered and run through a benchtop fluorometer to obtain chlorophyll concentration which can then be used to estimate primary productivity, or the speed at which photosynthetic organisms produce new matter. Although this measurement may seem a bit boring to some, especially when compared to fish and marine mammals, it is important to remember that photosynthetic organism make up the basis of the food chain and without them no other organisms would exist in the oceans.

The Ocean Starr's floating laboratory
The Ocean Starr’s floating laboratory

My work, however, involves sifting the trawl catches. A trawl is a net that is dragged 30 meters from the surface of the water and is designed to catch organisms in the water column. The trawl is shaped like an ice cream cone with an end called the codend made up of a small mesh that prevents organisms from escaping. The scientist is charge of this part of the operations is Keith, an entertaining character who enjoys telling stories. He has informed me that trawling is conducted at night because if held during the day the fish can see the net and avoid it. Night trawls are therefore the preferred method for sampling for juvenile fish. There are several other people who assist in sorting the catches. Among them are Amber, a member of the NOAA core, Lindsay, who is a fisheries technician, and Kaia, who is a volunteer.

The water has been quite rough, so rough that we altered course last night and made modifications to our planned course which meant only four 15-minute trawls were conducted instead of the planned five. The majority of last night’s haul was krill; a shrimp-like organism about an inch or inch and a half in length. Mixed in with the numerous krill was a variety of organisms that included juvenile rockfish species, juveniles from other types of fish, market squid, Gonatus squid, and several octopi. In addition, we collected jelly-fish like organisms called ctenophores and colonial salps (a common name for any type of gelatinous zooplankton). Ctenophores have sticky cells that trap their food while colonial salps are filter feeders; both consume phytoplankton and zooplankton. Someone unfamiliar with these organisms might have difficulty believing that they are animals since they lack any readily apparent brain, eyes, ears, or mouth.

Does this look like an animal to you?
Does this look like an animal to you?
This salp is from the genus Thetys
This salp is from the genus Thetys
assortment of catch
Some of the typical organisms in a catch

                                       

Tonight we conducted a 5-minute trawl to “test” the waters for the presence of jellyfish. Since jellyfish can quickly clog a net, it is important to determine if the area is suitable for trawling before commencing operations. The exploratory trawl produced no jellyfish, so a 15-minute trawl has conducted. Unfortunately, little was obtained during the first trawl, while the second trawl yielded a number of market squid. We’ll continue operations throughout the evening. There is a good bit of down time between each trawl since we have to move to a different point between trawls and wait for the CTD to be deployed at each site. While I keep busy working on my blog, others surf the Internet, nap, eat a snack, or chat. Which would YOU do???

Lindsay and Amber record data
Lyndsey and Amber record data
Check out the krill!
Check out the krill!
I'm holding a juvenile rockfhish
I’m holding a juvenile rockfish

Personal Log

Yesterday morning Dave, one of the crew, went over the safety rules and emergency procedures with me. As part of my training I put on my survival suit which is designed to keep me afloat if there should be a reason to have to evacuate the ship. I hope I never have to actually use it, as is not the easiest item to put on. The large rubberized gloves make it very difficult to pull up the zipper (and it gives you some bad “hat hair!”).

Thumbs up for the survival suit
Thumbs up for the survival suit

I have quickly come to realize that the galley area is the place people come to congregate. Because of the various shifts, food is available 24-7. A whiteboard proclaims the meal times (6 am, 11 am, 5 pm, and 11 pm). The cook, Crystal, has been very accommodating regarding my request of non-dairy products; I have been treated to several non-dairy cheeses and was happy to see soy milk in the fridge. Others were happy to spot the special freezer that contains ice cream.

Along with the varied mealtimes comes varied sleep times; I will be working the night shift starting last night. I am a bit surprised to learn that the majority of the work is actually done during the night; while there are six of us who do the sampling for the night shift, there are only three who work during the day.

Shhhh! People sleeping!
Shhhh! People sleeping!

I have spent quite a bit of time chatting with Don, a fisheries biologist who dabbles in hobbies such as robotics, computer animation, and origami. His main job is to communicate with the captain regarding our course to ensure that we are trawling in the correct areas. He had warned me that things would get rocking once we are underway. Evidently a stubborn stationary high pressure system is responsible for rough seas. A small weather craft has been declared, and although we are not a small weather craft, we are not immune from the effects of the elements.

Don has been correct in his predictions. As I sit here typing in the laboratory, papers and magazines are sliding from one end of the table to the other as the ship rolls back and forth. The pitch today has changed from yesterday. The intensity is no doubt responsible for my discomfort. As the ship pitches unpredictably, I find that my stomach rolls as well despite a preventative course of seasickness medication. Even the old trick of looking out on the horizon did not help much this afternoon when the horizon disappeared and reappeared with each roll. I find it interesting that I am in minority and wonder if immunity to seasickness is something akin to immunity to poison ivy (not that I’m immune to that, either!). My friend Don assures me that things will be calmer soon; the swells are supposed to decrease substantially within the next 24 hours and as long as I “don’t mind a little rain” things should be improving.

Despite this, I am enjoying the friendship of my new acquaintances and have many new “firsts” such as holding an octopus in my hand, truly comprehending what krill look like, and seeing blue whales for the first time. Tomorrow will no doubt bring more surprises as I continue to adjust to life at sea.

Did You Know?

That fish are aged by their ear bones?

Andrea Schmuttermair: Tows Away! June 26, 2012

NOAA Teacher at Sea
Andrea Schmuttermair
Aboard NOAA Ship Oregon II
June 22 – July 3

Mission: Groundfish Survey
Geographical area of cruise: Gulf of Mexico
Date: June 26, 2012 

Ship  Data from the Bridge:
Latitude:  2805.26N
Longitude: 9234.19W
Speed:  10mph
Wind Speed:  5.86 knots
Wind Direction:   E/SE
Surface Water Salinity:  35.867 PPT
Air Temperature:  28.8 C
Relative Humidity: 86%
Barometric Pressure:  1010.51 mb
Water Depth:  96.5 m

Science and Technology Log


Sunrise
Sunrise on the Oregon II

Opisthonema oglinum, Lagadon rhomboides, Chloroscombus chrysurus…..yes, I have officially started dreaming about taxonomic names of our fish. It’s day 4 and I now have a much better grasp at identifying the variety of critters we pull up in our trawls. I am always excited to be out on deck when they bring up the trawl to see what interesting critters we catch. Surprises are great!

Do you want to know where the Oregon II is headed?

Check out Ship Tracker at http://shiptracker.noaa.gov/

If you click on the link above, you can see the path that our ship is taking to hit all of our stations for the survey. We often have station after station to hit- meaning as soon as we are done sorting and measuring, we have to bring in the next catch. Because some stations are only 3-5 miles apart, we sometimes have to do “double dips”, where we put in the trawl for 30 minutes, pull it up, and put it right back in again.

It’s been interesting to note the variety of our catches. Croakers, bumperfish, and shrimp have been in high abundance the last 2 days as we were in shallower water. Before that we had a couple of catches that had a high abundance of pinfish. When we take our subsample, we typically enter data for up to 20 of that particular species. We take length measurements on each fish, and on every fifth fish. We will also weigh and sex it (if sexing is possible).

Shrimp in the Gulf
A comparison of the various sizes of shrimp we pull up from our trawls.
Shrimp waiting to be measures
A relatively small catch in comparison to the 200+ we’ve been pulling up recently.

When we were in shallower waters, we had a significant increase in the number of shrimp we brought up. Tuesday morning was the first catch that did not have well over 200 shrimp (this is because we’ve been moving into deeper waters).  For the 3 commercial shrimp, white (farfantepenaeus setiferus), pink (farfantepenaeus duorarum), and brown (farfantepenaeus aztecus), we take 200 samples, as opposed to our high-quantity fish, where we will only take 20 samples. For each of the commercial shrimp we catch, we measure, weigh and sex each shrimp. I’ve gotten very good at identifying the sex of shrimp- some of the fish are much more difficult to tell. The information we get from this survey will determine the amount of shrimp that boats can take during the shrimping season in Louisiana and Mississippi. During the first leg of the groundfish survey, the data collected determined the amount of shrimp that could be caught in Texas. The groundfish survey is crucial for the shrimping industry and for ensuring that shrimp are not overfished.

Students- think of the food chain. What would happen if we overfished and took out too many shrimp? (Hint: Think of predators and prey.)

Sunrise
The trawl net at sunrise

We’ve now started doing 2 different tows  in addition to our trawls. Some of the stations are trawl stations, whereas others are plankton stations.

The trawl on deck
Alex, Alonzo and Reggie unloading the trawl net.

At a trawl station, we lower the trawl from the stern down to the ocean floor. The trawl net is meant for catching larger critters that live at the bottom of the ocean. There is a chain, also known as a “tickler”, which moves lightly across the ocean floor to lure fish to leave their hiding spots and swim into our net. The trawl is down for 30 minutes, after which it is brought back on deck to weigh the total catch, and then brought back into the wet lab for sorting.

Another important mission of the groundfish survey is to collect plankton samples. To do this, we use a Neuston tow and a bongo tow.

neuston tow
The Neuston tow about to pick up a lot of Sargassum- oh no!

The Neuston tow has a large, rectangular frame with a fine mesh net attached to it. At the end of the net is a large cylindrical bucket, called a codend, with a mesh screen meant for catching the organisms. In comparison to the trawl net, which has openings of 41.4mm , the Neuston’s mesh is only 0.947mm. This means the mesh is significantly finer, meant for catching some of the smaller critters and plankton that would otherwise escape the trawl net. The Neuston tow is put on the surface of the water and towed for 10 minutes. Half the tow is in the water while half is out. We end up picking up a lot of Sargassum, or, seaweed, that is found floating at the water’s surface. When we gather a lot of Sargassum, we have to sift through it and spray it to get out any of the organisms that like to hide in their protective paradise.

Bongo tow
The bongo tow on deck waiting to be sent down to about 3m from the ocean floor.

After we’ve completed the Neuston tow, we do the bongo tow.  The bongo’s mesh is even finer than the Neuston tow’s mesh at only 0.333mm. The bongo has 2 parts- a left and a right bongo (and yes they do look a little like bongo drums- hence their name). The top part of the bongo is a large cylinder with an open bottom and top. The net is attached to this cylinder, and again at the bottom of each side is cylindrical tube  called codends meant to catch the plankton. The bongo tow is meant to take a sample from the entire water column. This means that instead of riding on the surface of the water, it gets sent down to about 3 meters from the ocean floor (there is a sensor at the top that is 2m from the bottom of the net)  and brought back up immediately.

Sifting through the sieve
The remnants from our Neuston tow. This is the sieve we use to weed out what we want and don’t want.
bongo leftover
Here are our 2 samples from the bongo tow. The left one is preserved in ethanol and the right is preserved in formaldehyde (10% formalin and sea water)
Neuston tow samples
Here is a sample from the Neuston tow. Carefully camouflaged are thousands of crab megalops, aka juvenille crabs.

For both tows, it is important to rinse the nets to get any lasting organisms we might not see with our own eyes into our sample. Once we’ve done this, we bring the tubes back into the wet lab where we continue to rinse them through a sieve so that only certain items are leftover. In the Neuston, we often find small fish (usually less than 3mm), baby shrimp, crabs and Jessica’s favorite, the Sargassum fish. Most recently a few flying fish got caught in our Neuston tow. Prior to pulling it up, I was enjoying watching them flit across the water- they were about all we could see in the water in the middle of the night. After being rinsed thoroughly through the sieve, we preserve them by placing the sample in a glass jar with either ethanol or formaldehyde solutions. They are preserved in ethanol for DNA work and in formaldehyde for long-term preservation. These samples are then saved to send to a lab in Poland, which is the sorting center for the SEAMAP samples.

Flying fish
Flying fish we pulled up in our Neuston tow at nighttime.

Personal Log

My stateroom
My sleeping quarters (top bunk), also known as a stateroom. My roommate is Kristin, one of the scientists on board.

Well, I think I am finally getting used to the schedule of working the night shift. I am thankful that my bunk is on the bottom floor of the ship- which means it is completely dark- so that I can sleep during the daytime. Yesterday was probably one of the least busy days we’ve had so far, and because we were in deeper waters, our trawls were much smaller. This means I had a little more time to work on my blogs, which at times can be hard to fit in. It amazes me that we have internet access on the ship, and it’s not even as slow as I expected. It goes down from time to time, especially when the waters are rough. We’ve been fortunate to have pretty calm waters, aside from the first day.

You may have heard about Hurricane Debby on the news as it prepared to hit the Gulf. On Sunday, we were heavily debating heading back to Galveston to “bunker down” and ride out the storm. However, the storm that was forming seemed to dissipate and head in a different direction, thank goodness.  I was not thrilled about the possibility of heading back to port!

We had our first drills the day after we set sail. The drills- fire and abandon ship are distinguished by different types of bells, similar to using Morse code. The abandon ship drill was fun. We got to put on our survival suit, which is like a big orange Gumby suit. It not only protects you in cold water, but also makes you highly visible. I remember reading some of the former TAS blogs, and this picture was always in. Of course, I’ve got to add mine as well.

Survival Suit
Here I am in my survival suit. Judd also decided to be in the picture. 🙂

I’ve been having fun exploring different areas of the ship, even though there is only so far you can go on the ship. Yesterday, I went up to the bridge, which is the front of the ship where the captain or the NOAA Corps officers steer the ship from. You can think of it like a control center of an airplane. There are navigation charts (both computerized and paper) and radars that help guide the ship so it knows what obstacles are out there. There is a great view from the bridge that you don’t get anywhere else on the ship. It’s also fun to watch the folks down on deck when they are deploying the CTD or either of the 2 tows.

We’ve caught such an abundance of critters, I thought I’d share some of my favorite catches thus far:

cownose ray
Here I am holding a cownose ray (Rhinoptera bonasus)- my favorite catch yet. He weighed about 25lbs! This one was the highlight of my day as rays are some of my favorite ocean critters!

Atlantic sharpnose shark
One of the 4 Atlantic sharpnose sharks (Rhizoprionodon terraenovae) we’ve caught so far.

Sharksucker
A sharksucker (Echeneis naucrates)- these guys hang onto sharks to catch a ride- he’s still alive so is able to hang onto my arm!

Critter Query Time!

Critter Query #1: What is a fathom (in your own words please)?

Critter Query #2: What are the differences between skates and rays?

Maureen Anderson: Out To Sea, July 26, 2011 (Post #2)

NOAA Teacher at Sea
Maureen Anderson
Aboard NOAA Ship Oregon II (NOAA Ship Tracker)
July 25 — August 9, 2011

Mission: Shark Longline Survey
Geographical Area: Southern Atlantic/Gulf of Mexico
Date: Tuesday, July 26, 2011

Weather Data from the Bridge
Latitude: 27.90 N
Longitude: -086.42 W
Speed: 11.50 kts
Course: 140.00
Wind Speed: 9.10 kts
Wind Direction: 272.65
Surface Water Temperature: 30.10 C
Surface Water Salinity: 26.89 PSU
Air Temperature: 30.10 C
Relative Humidity: 64%
Barometric Pressure: 1011.94 mb

Science and Technology Log

We set off from Pascagoula, Mississippi yesterday at 3PM. We had a short delay in leaving due to some maintenance that had to be handled, but it wasn’t too long until we were underway. It turns out we will be motoring around the southern coast of Florida and up the Atlantic to reach our stations. This project’s mission is to monitor the variability in shark populations off the Atlantic coast and Gulf of Mexico. We should begin setting line with baited hooks on Thursday. Each shark caught will be measured for length, mass, and sex. Some sharks will also be tagged in order to collect more data after their release.

Map of our course
This is our course map. It may or may not change.

The Oregon II has 30 people aboard, including crew, scientists and volunteers. The crew includes officers, fishermen, cooks, an electronics technician, engineers, and other NOAA personnel. In addition to the mission of the NOAA survey, there are volunteers who are performing their own research, such as studying the stress levels of sharks, shark reproduction, and identifying plankton species. The boat itself is a 170-foot vessel.

The Oregon II
Here is the Oregon II before leaving port.

Personal Log

I’m having a great time on the ship and the people aboard are wonderful. Everyone has been very welcoming and willing to answer my (many) questions about nearly everything. I will be working the day shift when we reach our first station (noon to 12AM), which is great because I can sleep at night normally. I settled into my room which has bunk beds, a sink, and a shared bathroom/shower with the room next door. One of the officers, Sarah, gave us a tour of the boat, including three exercise rooms! I have yet to try them out, but I’m thinking it will be the ultimate test of balance to run on a treadmill while the boat is in motion. Since we have a few days (three) before reaching our first station, many of us have been watching movies (there is a big screen TV in the lounge), reading, and relaxing. I’m sure the work will pick up soon enough, so it’s nice to take it easy for a while. But I am eager to get started. I had a hard time eating dinner last night. For some reason, I lost my appetite. I don’t think it had to do with sea-sickness, but perhaps adjusting to the rocking motion of the boat. The seasickness patch I’m using is working out well so far.

My room
Here is my room. Good 'ole bunk beds!

Today we practiced a fire and emergency drill (abandon ship). During an abandon ship drill, we put on our survival suits. They are big, orange, and take some practice getting into! The suits will keep you warm and buoyant in water. Each one has a strobe light and whistle. When I finally got into mine (with some helpful tips from others) I looked like a big orange Gumby. That is why the survival suits are also called “Gumby” suits.

Survival suit
Here I am in my survival suit. It is my best outfit ever - I am ready for anything!

Something to Think About

A ship out to sea has to be self-sustaining. We are like our own floating city. How do we get fresh drinking water? Where does our waste go? How do you feed 30 people 3 times a day for 16 days? These are questions you may or may not have wondered about…well I’m going to tell you anyway! The boat makes its own fresh water through a process known as reverse osmosis. This removes salt and other molecules from water to make it usable. It gives us drinking water, and water to wash with (for showers, laundry, dishes, etc.) The heads (or toilets) are flushed using salt water. This makes sense because we have an unlimited supply! We have a marine decomposing system that adds bacteria to break down human waste before releasing it to sea. Food scraps? Also sent out to sea to decompose or be eaten. Garbage? Well…we have to hang on to that for the entire trip. This really makes you think about trying to reduce the amount of garbage you produce.

Kathleen Harrison: Getting Underway, July 4, 2011

NOAA Teacher at Sea
Kathleen Harrison
Aboard NOAA Ship  Oscar Dyson
July 4 — 22, 2011 

Location:  Gulf of Alaska
Mission:  Walleye Pollock Survey
Date: July 4, 2011

Weather Data from the Bridge
Barometric Pressure:  1018.32 mb
Air Temperature:  8.77 ° C
Sea Temperature:  9.31 ° C
True Wind Direction:  218.63 °
True Wind Speed:  16.94 knots
Latitude:  55.12° N, Longitude:  157.31° W
Ship’s speed:  12.5 knots

Personal Log

Fishing Fleet of Kodiak
Kodiak has the second largest fishing fleet in the U.S. This photo shows some of the various kinds of fishing boats that are docked in Kodiak.
abandon ship drill
This is the survival suit, equipped with strobe light, inflatable, and leash. It is affectionately called "Gumby Suit". Isn't it adorable?

July 5, 2011:  I might not have seen fireworks yesterday, but it was still a pretty exciting day, with the departure of the Oscar Dyson from the pier.  I stood outside on the forward deck, and enjoyed the view as we pulled away from Kodiak.  We have been cruising at a steady 12.5 knots (13.5 mph), heading toward the start point of Leg II of the Walleye Pollock Survey.  Our charted course will take us from an area that is southwest of Kodiak Island, up past the east side of the island, and around to the west side of the island, ending back in the port of Kodiak.  I will start working tomorrow morning – 4 am!  Scientific information will probably be included in the next log entry.  Kodiak is a scenic fishing town, on the edge of the island. In the picture above is one of the marinas.

Right before we left Kodiak, the ship ran 2 drills.  We had to carry our survival suit to our muster station, and learn about abandoning ship, and fire drill procedures.  I hope I never have to wear this suit for real, as I was quite claustrophobic putting it on.  I know I would be thankful for it, if the need for wearing it ever came about.

I spent some time on the bridge, learning about radar, navigation, and sea birds.  I even saw a whale spout!

Species seen today:

Northern Fulmar
Tufted Puffins
Black-footed albatross
Black-legged kittiwakes