Julia Harvey: Pollock on Deck/The Beautiful, the Strange and the Interesting, August 3, 2013

NOAA Teacher at Sea
Julia Harvey
Aboard NOAA Ship Oscar Dyson (NOAA Ship Tracker)
July 22 – August 10, 2013    

Mission:  Walleye Pollock Survey
Geographical Area of Cruise:  Gulf of Alaska
Date:  August 3, 2013 

Weather Data from the Bridge (as of  00:00 Alaska Time):
Wind Speed:  26.5 knots
Temperature:  13.6 C
Humidity:  84%
Barometric Pressure:  1014.6 mb

Weather Update:
A low pressure system is in the north Pacific and we are having increase winds and swells.

Science and Technology Log:

We listened. We fished. Now what?

Before reporting to the fish lab, I must gear up.  Slime gear keeps the scales and goo off of my clothes.

slime gear
Preventing head to toe slime.
Julia Harvey
That is me holding coral while in my slime gear.

Fish are emptied out of the net and onto the table outside the fish lab.

fish table
The fish caught in the trawl net are emptied onto this table.

We can control how many fish land on the conveyor belt by raising the table and opening the door.

conveyor belt
As Darin opens the door, the fish will slide from the table to the conveyor belt.

The fish on the conveyor belt are separated by species.

Separating species
As the fish come off the table, Jodi and I separate the species while Darin weighs them.

In this blog we will focus on the pollock that were caught.

sorting pollock
Sorting pollock

Pollock are gathered into baskets and weighed.

pollock
Basket of pollock ready for the scale.

We group the pollock into 3 groups; age 1, age 2 and age 3+.  Each group as an entirety is weighed.  Each age group has a somewhat different protocol for processing.  Fifty specimens that are age 1 will be measured with the ichthystick and 10 will also be weighed.

icthystick
To measure a pollock put his head at zero and use the magnetic reader to mark his fork length.

Fish that are age 2 are processed as age 1 but are also sexed.

When measuring a pollock on an icthystick, one measures from the head to the fork in the tail.  The icthystick (a magnetic board for measuring fish) is connected to a computer that automatically records the data.

The larger pollock are grouped by sex. To do this, we cut open their abdomen and look for ovaries or testes.

sexing fish
The abdomen must be opened to determine the sex of the pollock

Then all of the fish (or at least 300) are measured on the icthystick.  Forty will be measured and weighed and set aside for otolith removal.

otolith removal
Otoliths are removed.

Otoliths are made of calcium carbonate and are located directly behind the brain of bony fishes.

otoliths
These are otoliths that were removed from an adult pollock.

They are involved in the detection of sound and the process of hearing.  The age of the fish can be established by counting the annuli much like one does when counting tree rings.

annuli
Scientists can count the rings of growth.

This age data allows scientists to estimate growth rates, maximum age, age at maturity, and trends of future generations. This data is vital for age based stock assessment models.  These fish are weighed and measured.  Otoliths are removed and placed in jars with glycerol thymol.

The jars have bar codes on the side so that the otoliths are linked to the fish’ weight, length and sex.

The otoliths are sent to Seattle for more detailed analysis of age. These results will be used to correspond length to age in the stock assessment report.

Sometimes, ovaries are removed and sent to other scientists for further histological study.

Other organisms that are caught alongside the pollock are counted and measured as well.  The catch might include Pacific ocean perch, salmon, herring, viper fish, lantern fish, jellyfish, squid, and capelin.  Below are a few of the normal finds and the rest can be found in my personal blog account “the beautiful, the odd and the interesting”.

capelin
capelin
herring
herring
POP
Pacific ocean perch
squid
squid

Personal Log:

The beautiful, the odd and the interesting

This trip is not just about pollock.  When we bring any of the nets in there is the possibility of weirdness and other things that catch my eye.  Jodi is always filling me in on the uniqueness of our discoveries.  And Darin lets me save organisms for photographing later.

My favorite find so far is the lumpsucker.  As Jodi says, they have gentle brown eyes and they do.  They also have suckers on the bottom that allow it to stick to substrate.

lumpsucker
Close up of lumpsucker

The Methot trawl went close to the bottom and picked up a handful of brittle stars.  At first, when they were mixed with all of the krill, it looked like a bunch of worms.

brittle stars
Brittle star collected from a methot trawl.
brittle stars
brittle stars

Pollock do eat young pollock.  We found evidence of this when Darin opened the stomach of an adult and discovered partially digested age 1 pollock.

pollock stomach
This pollock had feasted earlier on young pollock.

Lanternfish (Myctophids) make up a huge amount of the deep sea biomass.  They have photophores along their sides for producing light.

Lantern Fish
Lanternfish

The adult Pacific sandfish bury themselves in the sand with only their mouths protuding.

Sand Fish

sand fish
This sand fish was not happy with me.

Prowfish lack pelvic fins.  They have continuous teeth to feed on jellyfish.

prowfish
prowfish

When I think of deep ocean fish I think of the viperfish with its needle sharp teeth.

viper fish
Viper fish with finger for scale.

This cute mud star came up with the brittle stars.  It was also referred to as the cookie cutter starfish because it resembles a shortbread cookie.

mud star
Mud star

Salmon are good swimmers and usually escape the net.  A few are caught at the surface.

salmon
sockeye salmon

When we were in Kodiak, I would watch the moon jellies drift by.  Now we are catching several different species of jellyfish like this sunrise jelly.

jellyfish
One of many species of jellyfish I have seen.

Jodi always has a keen eye for finding nearly invisible creatures.  The arrow worm is a voracious predator.  They immobilize their prey with neurotoxins.

marine worm
arrow worm

I had never heard of a sea mouse before this cruise.  Now I have.  Except it is not a rodent.  It is a carnivorous worm that feeds on hermit crabs and other worms.  It is also a scavenger like a vulture.

Actually a worm
Sea Mouse

Some isopods are parasitic and will feed off of the blood of fish in the gill chamber.  I prefer their cousins the pill bugs.

isopod
parasitic isopod
sea pens
sea pens
sea anemone
sea anemones

Did You Know?

When we are all measuring and weighing away in the lab, it sounds like a video game.  Each machine has it’s own unique sound effects.  This allows scientists to have confidence that their data was recorded.

Lab machines
Scanning the bar code.
machine noise
All machines have unique recording sounds

Barbara Koch, September 28, 2010

NOAA Teacher at Sea Barbara Koch
NOAA Ship Henry B. Bigelow
September 20-October 5, 2010

Mission: Autumn Bottom Trawl Survey Leg II
Geographical area of cruise: Southern New England
Date: Tuesday, September 28, 2010

Me in Front of the Henry Bigelow
Me in Front of the Henry Bigelow

Weather Data from the Bridge
Latitude 41.36
Longitude -70.95
Speed 10.00 kts
Course 72.00
Wind Speed 19.19 kts
Wind Dir. 152.91 º
Surf. Water Temp. 18.06 ºC
Surf. Water Sal. 31.91
PSU Air Temperature 19.80 ºC
Relative Humidity 91.00 %
Barometric Pres. 1012.45 mb
Water Depth 31.48 m
Cruise Start Date: 9/27/2010

Science and Technology Log

I have the privilege of working with the science team on Leg II of the Autumn Bottom Trawl Survey aboard the NOAA Ship Henry B. Bigelow from September 27 – October 7, 2010. We left port on Monday, September 27 and have been conducting the survey in the waters of Southern New England.

Processing Fish
Processing Fish

Fisheries surveys are conducted every spring and autumn in order to determine the numbers, ages, genders and locations of species that are commonly caught by the commercial fishing industry. The surveys are also carried out to monitor changes in the ecosystem and to collect data for other research. The scientists working on this leg of the survey are from Alaska, Korea, and New England. This ship works around the clock, therefore, we are divided into a day watch and a night watch, and we are all under the direction of the Chief Scientist, Stacy Rowe. I’m on the day watch, so my team processes fish from 12:00 noon until 12:00 midnight.

In order to collect a sample of fish, our ship drags a net for twenty minutes in areas that have been randomly selected before the cruise began. After the “tow,” the net is lifted onto the boat, and the fish are put in a large area to await sorting. The fish move down a conveyor belt, and we sort the fish by putting the different types into buckets and baskets. Once, the catch has been sorted, we move the buckets onto a conveyor belt, which moves them to stations for data collection.

Measuring fish
Measuring fish

Two people work at a station. One is a “Cutter” and the other is a “Recorder.” The cutter measures the length and weight of the selected species of fish on a “fishboard.” This data is automatically entered into the computer system. Depending on the species, the cutter might also be required to take an age sample or a stomach sample. Age is determined by collecting scales or an otolith (sometimes called an ear bone), depending on the species. The cutter removes these and the recorder puts them in a bar-coded envelope to send back to the lab for later study. The cutter also removes the stomach, cuts it open, and identifies what the fish has eaten, how much, and how digested it is. All of this information is entered into the computer for later analysis.

The information gathered during this cruise will give NOAA and other organizations valuable information about the health of the fish species and their ecosystem.

Personal Log

I arrived the night before we left port, and I was able to spend the night on the boat. My stateroom sleeps two people in bunk beds, and each person has a locker in which to stow our belongings. The stateroom also has a bathroom with a shower. Right across the hall is the scientist’s lounge. It has two computers, a television, many books, and games. This is where we sometimes spend our time while we are waiting for a tow to come in.

We spent much of the first day waiting to leave port. Once underway, some tests were conducted on the nets, and my Watch Chief showed me pictures of some of the common species we would see, explaining how to identify them. We began processing fish today. The first time the fish came down the conveyor belt, I was nervous that I wouldn’t know what to do with them. It worked out fine because I was at the end of the conveyor belt, so I only had to separate the two smallest fish, Scup and Butterfish, and Loligo Squid. After my first try at processing, I felt much more confident, and I even was able to tell the difference between Summer and Winter Flounders. One faces to the right and the other faces to the left!

Thomas Ward, September 14, 2010

NOAA Teacher At Sea: Thomas Ward
Aboard NOAA Ship Miller Freeman

Mission: Fisheries Surveys
Geographical Area of Cruise: Eastern Bering Sea
Date: September 14, 2010

After the Catch

This segment is devoted to what happens to the organic material we acquire once we get it on board.  The benthic sled has a very fine mesh net, plankton net, attached to it and has a container at the end of it, a cod end.  This is where the epibenthic invertebrates end up.  Once the gear is on board the crew washes down the net with sea water to get any invertebrates to wash down into the cod end.  It took getting used to that the garden hoses around deck have salt water in them.  Growing up all your life using hoses outside with fresh water in them and then being on board here and getting an occasional spray to the face and it is salt water is a reminder of where I am really at.  Any how, the sample in the cod end is put into a jar and preserved in a buffered Formaldehyde solution.

The beam trawl is used to study settlement and nursery areas for age-0 flatfishes.  This is probably what most people would associate with net fishing.  When the haul comes up there is an assortment of organisms in it.  The catch is dumped in to a kiddie pool and we gather around it and start to sort, flopping flat fish and all.
Sorting

These pictures are a good example of what we are doing.  Remember that we are primarily studying juvenile species and what is the primary mechanism in nature that helps these little ones become adults.
The fascinating thing is the differences in the catches per location.  Once the fish that are the focus of this study have been sorted, they are measured, weighted, bagged and frozen.  They are carefully labeled and frozen at a temperature of -80 degrees Celsius in the rough lab.  After 24 hours they can be moved to a “warmer” freezer, -20 degrees Fahrenheit, which is in the slime lab.

Keepers

The catch comes on board at the stern of the ship, which is the open rear of the ship where the majority of the heavy equipment is, like cranes and such.  After the catch is sorted it is brought into the wet lab for measuring, weighing and bagging.  The measuring board that we have in this lab is very cool.  There are touch screen monitors that are set up where the species that we are concerned with is selected.  The correct species is chosen and the fish are individually placed on this electronic board.  The scientist then puts the individual fish nose at one end and takes a hand held device and places it near the tail.  The machine makes a funky sound and the length of the fish is recorded electronically.  Very cool, quick and convenient.  With a good team working this station, a fish can be measured about one every second, pretty efficient.

The benthic grab is specifically used to sample subtidal soft-bottom benthic macroinvertebrates.  This is done to determine what is in the substrate.  This is the layer just below the surface.  This is what the juvenile flat fish feed on.  When determining what causes a population’s numbers to fluctuate it is important to study what it eats

Jellyfish

The jellyfish above are very cool but not of much interest to this study.  The sole above is one of the larger flat fish that we have caught.  We do catalog them but we do not save them for future study.  The interesting thing that I want to point out about the picture of the sole is the location of their eyes.  Both eyes are on the same side of their body.  These fish lay on the bottom and wait for prey to swim by.  It is and was a huge evolutionary advantage for them to have both  eyes on one side of their body.

Yellowfin Sole

Life on board ship is a very different experience.  Yesterday was proof of that for me when the seas turned to 7-9 feet and my body could not handle it.  The crew amazed me because word of my illness spread around and many pepole have been asking me how I have been feeling today.  It is what I would call a concerened, caring, working family.  At first coming aboard, getting around the ship was very confusing.  There are numerous stairways that lead to different decks and there is a very similar look to things on the ship.  I am getting used to it and to stepping through a bulkhead to walk through the ship.  These bulkhead doors are water tight doors that are closed to protect parts of the ship in case of an accident.  The sleeping quarters are sufficent.  I am in a 4 man room with 3 other guys, with a bathroom attached to it.  I have my own personal locker which contains my personal effects and my life jacket and survival suit.  On the door the crew placed a billet which is a document that is specifally designed for the individual.  Among other things it gives my lifeboat station which we would have to muster to if an emergency occurred.  We have practiced this drill and hope that it does not become real any time soon.  I am in a lower bunk.  The noise and the motion of the ship is the hardest thing to get used to.  I occasionally sleep with ear plugs but that does not seem to help much.  A solid, uninterupted 8 hours of sleep will be very much appreciated when I return.  But, as any one that knows me knows that I can definately catch up on sleep by napping, and just about anywhere.

Remember that if you have any questions you can ask through this blog.  I believe you have to sign up for a Google account but it seems to do anything on the web these days you either have to register or sign on in some manner.  Just click the commnets icon towards the bottom of the blog and follow the prompts, it is not too cumbersome.  I hope you have enjoyed reading this and I am almost done describing the science so I hope the questions start rolling in.  Hope for flat seas for me.