Lesley Urasky: Do You See What the Pisces “Hears”?, June 22, 2012

NOAA Teacher at Sea
Lesley Urasky
Aboard the NOAA ship Pisces
June 16 – June 29, 2012

Mission:  SEAMAP Caribbean Reef Fish Survey
Geographical area of cruise: St. Croix, U.S. Virgin Islands
Date: June 22, 2012

Location:
Latitude: 18.5472
Longitude: -65.1325

Weather Data from the Bridge:

Air Temperature: 28.6°C (83.5°F)
Wind Speed:  9 knots (10.5 mph), Beaufort scale: 3
Wind Direction: from SE
Relative Humidity: 77%
Barometric Pressure: 1,014.80  mb
Surface Water Temperature: 28.1°C (82.6°F)

Science and Technology Log

Another aspect (much more technical) of the scientific research conducted on this cruise is the collection of acoustic data.  This field is continually evolving as the detection resolution improves allowing scientists to more precisely identify fish.  This has been used with more success in fisheries farther north because the schools of fish are more likely to be monospecific (a single species).  However, the technique still needs improvement in warmer waters where the fish assemblages tend to be multi-specific (having a much greater variety of fish).

General idea behind an acoustic sounder being used to detect fish. (Source: www.biosonicinc.com)

This field of study is called Hydroacoustics (hydro- means water, and acoustics refers to sound).   It is the science of  how sound moves through water. Leonardo da Vinci noticed how sound travels through water in 1490.  He noticed that, “If you cause your ship to stop and place the head of a long tube in the water and place the outer extremity to your ear, you will hear ships at a great distance from you.” (Urick, Robert J. Principles of Underwater Sound, 3rd Edition. New York. McGraw-Hill, 1983.)  World War I helped promote innovation in the field, especially with the need for anti-submarine detection devices (Wood, A. B., From the Board of Invention and Research to the Royal Naval Scientific Service, Journal of the Royal Naval Scientific Service Vol 20, No 4, pp 1-100 (185-284)).

Hydroacoustic instruments utilize SOund Navigation and Ranging, more commonly referred to as SONAR.  The ship Pisces is equipped with a system located on the center board; this is a flat structure that can be raised/lowered through the water column beneath the center of the ship.

Line drawing of the NOAA ship Pisces showing the location of the center board.

The system used is a sonar beam that is split into quadrants.  This instrument is used to assist in determining fish abundance and distribution.  The premise is relatively simple: an echo sounder transmits a pulse of energy waves (sound), when the pulse strikes an object, it is reflected (bounced) back to the transducer.  The echo sounder is then processed and sent to a video display.  This is the same general process behind the recreationally available fishfinder.

Acoustic beam split into quadrants (Source: http://www.htisonar.com
A short burst of energy is focused into a narrow beam.  When this beam encounters an object such as a fish, a school of fish, plankton, or other object, some of the energy bounces back up through the water to the transducer.   It is the detection of these reflections that allow scientists to determine location, size, and abundance of fish.  These reflections show up on our video monitor.  These measurements are combined with groundtruthed data (for example, fish collected in the field, camera images).

One of the difficulties in data interpretation is that often, the signals that appear on the computer monitor have false readings.  This is a result of the sound wave bouncing multiple times.  It travels to the bottom from the transducer, strikes an object, returns to the ship, bounces off the ship back toward the bottom, strikes another object, and is detected yet again.

Real-time annotated echogram at sampling site.

The Pisces is actually home to one of six multi-beam acoustic instruments in the world.  Of the six in existence, NOAA has five of them.  The benefit of running a multi-beam instrument is that each beam can be set to measure a different frequency (kHz), thus enabling detection of many more features (different species of fish, etc.)

Scientific multibeam echo sounder (Source: www. simrad.com)

Personal Log

Last night the crew of the Pisces carried out a task that they don’t normally perform.  The Pisces was created for fisheries research projects – it focuses on collecting fish samples either by bandit reel, longline, or trawling.  This particular operation was to deploy the anchor for a buoy that will be attached at a later date.  When the buoy is ready to be attached, another vessel will bring it out to the site and divers will go down to the anchor to make the final attachment.

The anchor consists of a huge rebar-reinforced concrete block with a very long chain that has marker floats attached at the end.  Logistically, this took some planning; the A-frame had to be raised and the anchor lifted with the Gilson winch with a 1″ spectra line (has an enormous tensile strength).  The gate to the ship’s ramp was lowered and the A-frame (or as the deck hands call it, the “Tuna Tower”)  repositioned so the anchor was hanging over the water.  The rope holding the anchor, chain, and float was cut through, and the anchor plunged to the ocean bottom.  Again, the crew made the operation go smoothly and demonstrated their ability to complete unexpectedly assigned tasks.

Today was a slow fishing day – no fish at all.  Without any fish to “work up” (collect samples from), the day goes more slowly and we have more down time.  With the extra time, I had a chance to interview Kevin Rademacher, the Chief Scientist on the cruise.

LU: What is your official job title and what are your job duties?

KR: I’m a Research Fisheries Biologist.  I work for the Reef Fish Unit at the NOAA Fisheries Lab in Pascagoula, MS.  I am the Senior Tape Reader/Reviewer, in charge of the readers that analyze  the video data we collect from Reef Fish Surveys.  I also help plan, organize, and run the surveys.  Additionally, I participate in trawl surveys and anything else the lab needs done.

LU: When did you first become interested in the ocean and marine sciences?

KR: I guess that would have been when I was really young.  There is a photo from the Panama City, Florida newspaper, two weeks after I was born with my parents pulling me in a homemade wagon along the beach!  I knew in junior high school that I wanted to be a cross between Jacques Cousteau and Marlin Perkins of Mutual of Omaha’s Wild Kingdom.

LU: It’s such a broad field; how did you narrow your focus down to what you’re currently doing?

KR: I got lucky and kind of fell into reading underwater videos at the initial stages of the project and fell in love with being the proverbial “fly on the wall”! It has allowed me to see the fish in their natural  habitat, different color phases, behavior, etc.

LU: If you were to go into another area of ocean research, what would it be?

KR: Marine Mammal Studies.  After college I trained dolphins and sea lions and put on shows with them for a local Oceanarium on the Mississippi Gulf Coast.

LU: What is the biggest challenge in your job?

KR: Communicating with people and writing papers.

Ariane Frappier and Kevin Rademacher reviewing a dichotomous key in order to determine the species of a fish we caught.

LU: What do you think is the biggest issue of contention in your field?

KR: The impression that commercial fishermen have regarding the work we do to regulate the fisheries they work in.

LU: What are some effects of climate change that you’ve witnessed during your career in fisheries research?

KR: The decline of coral reefs and overfishing of some species.

LU: In what areas of marine science do you foresee a lot of career paths and job opportunities?

KR: Ecosystem management and data modelers.  There has also been a decline in taxonomists over the past few decades.

LU: How would you explain your work to a layperson?

KR: I use underwater cameras to help assess populations of reef fish, especially snappers and groupers.  The data collected is used to manage those fisheries.

LU: If a high school student wanted to go into your field of study/marine science in general, what kinds of courses would you recommend they take?

KR: Math, Biology, Chemistry, and any other science courses available.

LU: Do you recommend students interested in your field pursue original research as high school students or undergraduates?  If so, what kind?

KR: Most definitely! Whatever they are interested in would be beneficial.

Well, only two more days left with the scientists before we pull into San Juan, Puerto Rico.  We have 17 more daytime sites to sample and then this survey will be over.  The scientific crew will be flying home on the 25th, and once home, their work will really begin.  Back in the lab, they will be analyzing the data and reviewing the video.  Some of them will be going back out on other cruises.  Kevin Rademacher will be going out on another reef fish survey in the eastern Gulf of Mexico.  It is currently delayed because of the potential formation of tropical storm Debby.  Joey Salisbury has a couple more; he will be going on a longline cruise and then another reef fish survey, both of which will be in the Gulf of Mexico.  Arian Frappier will be heading off to begin a masters program in marine systems and coastal studies at Texas A&M Corpus Christi.

After a day’s shore leave in San Juan, I’ll continue on to Mayport on the Pisces.  During this time, I’ll focus on the crew members and their jobs.  The cruise will definitely take on a different feel at this point, but it will give me an opportunity to explore other ocean related careers.

Lesley Urasky: Setting Sail from St. Croix, June 16, 2012

NOAA Teacher at Sea
Lesley Urasky
Aboard the NOAA Ship Pisces
June 16 – June 29, 2012

 

Mission:  Caribbean Reef Fish Survey
Geographical area of cruise: St. Croix, U.S. Virgin Islands
Date: Saturday, June 16, 2012

Location:
Latitude: 17.6395
Longitude: -64.8277

Weather Data from the Bridge:
Air Temperature: 29°C (84°F)
Wind Speed: 15.76 knots (18.1 mph)
Relative Humidity: 79%
Barometric Pressure: 1,012.7 mb
Surface Water Temperature: 29°C (84°F)

Personal Log

My trip to meet the Pisces and become a Teacher at Sea was a two-day process.  I traveled from my home in Sinclair, Wyoming to Denver, Colorado to catch the first of three flights.  The first flight was from Denver to Dallas/Ft. Worth International Airport; after a two-hour layover, I then flew to Miami.  Originally, I was to travel the entire way in one day.  However, I didn’t want to arrive in St. Croix at 10:00 p.m. and have to make my way to the pier, pass through security, board the ship, find my stateroom, and hopefully meet some of the crew and scientists late at night.  Instead, I spent the night in Miami and flew to St. Croix the next morning.

Trip to St. Croix from Sinclair, Wyoming
Google Earth view of my trip to St. Croix.

Once I landed at the Frederiksted Airport on St. Croix, I took a taxi to the cruise ship pier.  The taxi driver was very concerned about taking me there, because no cruise ships were docked; he was doubtful that any ship was there.  After convincing him that a NOAA ship was indeed docked, he moved aside the sugar cane in the back, loaded my bags, and took me to the pier.  Breaking my trip into two pieces turned out to be the best plan because once I got to the security gate, there was no approved members list at security and they wouldn’t accept my travel document.  They called the ship and the Commanding Officer (CO) came down the pier to meet me at the gate and escort me to the ship.  After a quick tour of the ship, I took some time to settle into the stateroom I’m sharing with the Operations Officer, Kelly Shill.  The rest of the afternoon was spent exploring Frederiksted.

The Pisces viewed from Frederiksted, St. Croix

On Friday, June 15th, I went to Christiansted with some of the ship’s crew members.  Kelly Schill, Operations Officer; Chris Zacharias, Junior Engineer; Peter Langlois, 3rd Mate; and I went shopping for souvenirs, had lunch, and fed the resident school of tarpon outside of Fort Christian Brew Pub.  Later that evening, we went to a beachside restaurant and watched a performance by some modern dance fire dancers.

Hungry tarpon waiting for tidbits.
Modern fire dancers
Fire dancers

Today we left port and embarked on the third Leg of the Caribbean Reef Fish Survey.  The first leg was when the Pisces traveled from Pascagoula, Mississippi to San Juan, Puerto Rico; here the ship picked up the scientific crew.  The second leg was from San Juan, Puerto Rico to St. Croix; during this time period, they collected data about the ocean and the fish along the reef system.  I joined the scientists and crew of the Pisces at Frederiksted, St. Croix in the U.S. Virgin Islands.  The Pisces was in port at St. Croix for three days for personnel change, resupply of the galley, and to give the crew a rest. During this leg, we will be traveling back to San Juan, Puerto Rico taking samples around St. Croix and St Thomas islands.  In addition to the reef fish survey, the Pisces will be deploying the base (anchor and chain) for another buoy to collect oceanographic data 3 nautical miles (nm) south of Saba, which is located between St. Croix and St. Thomas.  The University of Virgin Islands is working in conjunction with NOAA to accomplish this goal.  Once back in San Juan, the scientists will leave the ship, returning home with the data.  On the fourth leg, the Pisces will return to Mayport, Florida, retrieving a buoy that is adrift along the way.  Commander Fischel is kindly allowing me to remain aboard during the cruise back to port!

Science and Technology Log

Here is a quick overview of all equipment the survey will use to collect data. There is an array of four video cameras that is baited with frozen squid.  The array is lowered over the side of the ship at each sampling site, and allowed to rest on the bottom for 40 minutes.  The cameras cannot be deployed during the night because there are no lights on the array. Therefore, viewing is dependent upon the availability of sunlight penetrating the water column.  Because of the need for natural light, the cameras are only used during daylight hours; the array cannot be deployed earlier than one hour after sunrise and must be retrieved from the bottom of the continental shelf or shelf edge one hour before sunset.

After the camera array is deployed, a cluster of instruments called a CTD is lowered to collect data on the ocean environment.  CTD is an acronym for Conductivity, Temperature, and Depth. Conductivity is used to determine the salinity (the amount of salts dissolved in the water).  Water conducts electricity (this is why you shouldn’t use electrical appliances while in or around water, and why the lifeguard tells you to get out of the pool during a thunderstorm).  As the salinity increases, conductivity increases.  Temperature is a very straight forward measurement.  I’m sure you’ve measured the temperature of several different things ranging from air temperature (to see how hot it is outside) to the internal temperature of a roasting chicken.  These measurements are related to specific depths within the water column. The depth the instrument is at in the ocean is calculated from measuring the hydrostatic pressure (how much pressure the overlying water exerts on the instrument).  The CTD instrumentation cluster collects huge amounts of data – 8 measurements per second!  These are averaged and compressed into “bins” covering 1 meter segments.

The CTD and camera array waiting deployment.

In addition, the instrument cluster also measures the amount of oxygen dissolved (DO) in the water column.  As you probably already know, most organisms require oxygen to live (carry out cellular respiration).  The amount of oxygen dissolved in the water is directly correlated to how much life the water can support.  More oxygen = more life.  When water is warmer, it loses its ability to “hold onto” oxygen; cold water will contain more dissolved oxygen.  This is one reason why climate change and warming aquatic environments are of great concern.

Victor, Joey, and Joe deploying the camera array

After both the camera array and CTD have been deployed and retrieved, the final step at each site is to collect fish through the use of bandit reels located at three sites on the ship.  All three are located on the starboard (right hand) side of the ship.  Reel #1 is starboard (S), Reel #2 is starboard aft (SA), and Reel #3 is starboard stern (SS) at the back of the ship.  Reel #3 is where I helped the attempts to collect fish.  Each bandit reel has ten hooks of the same size (8/0, 11/0, and 15/0) attached to a 300-lb test monofilament.  Each of the hook sizes are rotated around the stations throughout the day.  These hooks are baited with slices of frozen Atlantic mackerel.  A 10 pound weight is attached to the end of the line, the baited hooks attached, and the line let out until it hits bottom.  Then, a float is attached and the line is left for five minutes before being reeled back in.

Any fish that are caught are identified and have their length and mass measured.  Afterwards, the fish’s otoliths are removed and it is opened to determine its gender and have its reproductive stage assessed.  More on the fish specifics to come!

Lesley Urasky: Tropical Waters and New Discoveries!

NOAA Teacher at Sea
Lesley Urasky
NOAA Ship Pisces
June 14 – June 26, 2012

Mission: Reef Fish Survey
Geographical Area of Cruise: U.S. Virgin Islands
Date: April 30, 2012

Personal Log

Hello, everyone!  Greetings from Sinclair, Wyoming!  My name is Lesley Urasky, and I am a science teacher at Rawlins High School in Rawlins, Wyoming.  I’m currently teaching Geology/Astronomy, Principles of Biomedical Sciences, and Physical Science.  This upcoming year will be my eighth  at RHS, and my fifteenth year as a science teacher.  I began my teaching career at the Science Academy of South Texas in Mercedes, Texas;  SciTech is a science and engineering magnet school.

My love of exploring Earth’s natural wonders began at a very early age.  My parents took me to the mountains when I was only a few weeks old and were very instrumental in making sure I was able to explore through amazing family trips all over the United States.  I attribute my travel bug to my mother, who just “wants to go!”

A few years ago, I realized that there was an entirely amazing opportunity for teachers to travel to the far reaches of the world and bring these experiences back to their students. Teacher Research Experiences (TREs)  are designed to allow teachers to accompany research teams and share the amazing science being conducted to help understand how the Earth and its processes work.  TREs have been demonstrated to be highly effective programs (Silverstein, S.C., Dubner, J., Miller, J., Glied, S., & Loike, J.D. (2009). Teachers’ Participation in Research Programs Improves Their Students’ Achievement in Science. Science, 440-442.)

I first discovered these opportunities through a program called PolarTREC.  As a PolarTREC teacher I accompanied a team of scientists to Antarctica where we spent five weeks camped in the Central Transantarctic Mountains along the Beardmore Glacier.

Tasting Ancient Ice
Here I am tasting ice from the Last Glacial Maximum (last ice age). The ice is about 15,000-18,000 years old.

Now, I have the unique opportunity to bring a completely different region and type of science to students — I’ll be participating in another chance of a lifetime — sailing on the NOAA Ship Pisces!  I’ll be aboard the ship for Leg 2 of the Caribbean Reef Fish Survey.   Having been to the polar regions and seen first hand the changes occurring there, I feel it is extremely important to show how our changing climate is having an impact on the world’s oceans.  I’m excited to be able to participate in the reef fish survey (this is similar to what we’ll be doing, but in a different region) to learn about the health of reefs and their associated fauna.  I’m hoping to be able to make connections between the science I learn on the cruise with global changes.

NOAA Ship Pisces
NOAA Ship Pisces

To see a short video of what I may be doing on my cruise, see  the following video by NOAA’s Ocean Today.  

Chris Imhof, November 19, 2009

NOAA Teacher at Sea
Chris Imhof
Onboard NOAA Ship Pisces
November 7 – 19, 2009

Mission: Coral Survey
Geographic Region: Southeast U.S.
Date: November 19, 2009

Science Log

After 3 days and many hours in front of computer screens and monitors I almost forgot I was on a boat. Tonight is my last night on the Pisces, and although at times it has been rough, I have started to get used to the rocking of the ship and know every crew member by name. I ran about the ship when I have had a second, to take in things knowing I will have chance tomorrow . I will miss looking across the open sea and having opportunities to catch a glimpse of a shark fin near the side of the ship and a huge sea turtle making its way across the waves. I will miss talking to the crew and the scientists, and working with Jeannine Foucault the other Teacher at Sea. I’ll probably write another log tomorrow to sum up the experience, but its hard

to rally up for a science log when you are tired and many of have to pack to disembark at Jacksonville tomorrow morning. As for the Pisces and her crew, they will make their way back to Pascagoula for the Holidays.

Jeannine Foucault, November 19, 2009

NOAA Teacher at Sea
Jeannine Foucault
Onboard NOAA Ship Pisces
November 7 – 19, 2009

Mission: Ecosystem Survey
Geographic Region: Southeast U.S.
Date: November 19, 2009

Seafloor ROV images
Seafloor ROV images

Science Log

Our last day of ROV dives and it was definitely worthwhile. PISCES held off the coast of South Carolina at the Edisto MPA (Marine Protection Area). We were able to get in four dives with the ROV. The scientists paid close attention to the marine habitat within the ecosystems of all four dives. The interesting conclusion was that all four dives had very different habitats. What is even more interesting is that these differing habitats affect the number of animals that live there. Some of the areas we saw were smooth sandy bottom and interspersed on the smooth bottom are rugged rocky outcrops.

The rocky reefs range in height from some being really short to some being very tall. Some of the rocky reefs can even be in a small area the size of a dinner plate and others are hundreds of square miles.

Rocky reefs from the ROV
Rocky reefs from the ROV

The important fact of the matter is that the rugged hard bottom is favored by many species of animals including corals, sponges, and other invertebrates. Scientists find that sunken ships or other debris that ends up at the bottom of the ocean becomes perfect habitat for animals. These areas protect fish species during spawning and from predators. Today’s discovery is that the most fish species we have seen was found not in the smooth sandy bottom but in fact in the rugged rocky outcrops and rocky reef ranges.

Things I have seen today:

hammerhead shark
sea turtle
sea cucumber
spotted goat fish
lobster
pencil urchin
banded butterfly fish
sand tilefish
sea biscuit

Question of the Day

What is a TED?