navigation – NOAA Teacher at Sea Blog

August 8, 2023August 10, 2023

Martin McClure: Navigating the Seas, August 7, 2023

NOAA Teacher at Sea

Martin McClure

NOAA Ship Oregon II

July 25– August 9, 2023

Mission: Shark/Red Snapper Bottom Longline Survey

Geographic Area of Cruise: Gulf of Mexico/Atlantic Ocean

Date: August 7, 2023

Latitude: 30°33.167’N

Longitude: 81°04.685’W

Air Temperature: 31° Celsius

Wind Speed: 12.01 knots

Rachel, wearing a navy blue NOAA Corps uniform, stands for a portrait photo next to a plaque on an exterior wall of the ship that reads: R.V. Oregon II, designed by R. H. Macy for U.S. Department of Interior Bureau of Commercial Fisheries, built by The Ingalls Shipbuilding (Company), a Division of Litton Industries, Pascagoula, Mississippi, 1967 — Executive Officer Lieutenant Commander Rachel Pryor

Navigating NOAA Ship Oregon II is at once one of the most important and complex tasks on board. It is in motion 24 hours a day and must have skilled individuals to keep the crew safe and accomplish the mission of the survey. I spoke with Commander Adam Reed, Acting Commanding Officer, and Lieutenant Commander Rachel Pryor, Executive Officer, about this task.

Oregon II operates on two engines with one propeller (prop). It has a controllable pitch prop. This means that the pitch of the blades can be changed in order to change speed or even reverse the direction of the ship. The rudder turns the ship to port or starboard. There are also bow thrusters that turn the bow one way or the other.

There are a variety of devices that the navigator uses to know where the ship is, and to stay on course. They have two different GPS devices, in case one goes out. Additionally, they have a magnetic compass as well as a gyrocompass.

A storm and cruise ship off near Jacksonville, FL.

There are two radar units to see where other ships are and to get detailed weather information. One unit is more precise than the other but may pick up rain storms which may interfere with spotting ships. The other unit will still work in that situation.

When navigating, it is important to not just maintain the correct heading but also monitor course over ground. Even though the ship is heading in the right direction it can be pulled off course by the water currents and winds. This is very important to keep in mind not only across long distances but also when approaching the high flyer to pick up the longline. They must approach at a 90° angle and then turn to follow the longline. This is a fairly precise maneuver that is affected by both wind and current.

view of the bridge, empty of personnel. It is lined with windows facing three sides. We see control panels and map tables, the helm, electric boxes on the interior wall. — The bridge. This is where NOAA Corps officers navigate *Oregon II*.

One important factor affecting the operation of the ship is the weather. Careful consideration of any weather conditions must be factored into any decisions made. No one is allowed on the deck if there are winds of 25 knots or more, waves of 4-5 feet, or lightning within 25 miles. Weather information is always monitored through five different sources. Decisions must be made while consulting and comparing different sources of data.

Executive Officer Rachel Pryor explained that there are two types of weather patterns to keep in mind when considering operations. The first are small squalls, which can be fast moving and may have lightning. These squalls may keep moving in the same direction and you can calculate when they will arrive. But they can sometimes dissipate, change course, or stay where they are. There are also larger weather systems to consider. These tend to be slower moving but can have seas “kicking up,” increased wind speeds, and lightning. These may require seeking some sort of shelter or even docking at a port.

photo of a screen displaying radar data from the website Windy.com. We are looking at map centered approximately on Brunswick, Georgia, extending south to the northern counties of Florida, north to Charleston, and west to about the border of Alabama and Georgia. The radar shows a storm system concentrated on the Georgia-Florida border with other storm patches in central Georgia. — Radar showing an approaching storm system.

Weather has impacted the survey several times during this cruise. One of the most memorable was when I was working my shift and we were told to expect a long delay due to the weather. After about 30-45 minutes we were told to go ahead and bait the hooks and lay the longline. It takes about 2 ½ hours to run a station from putting the first hook in, to pulling the last one out of the water. The weather was beautiful and the seas were relatively calm during the station. Within a few minutes of finishing, the winds began to kick up as a system approached. In my estimation, these were pretty amazing calculations by Lieutenant Commander Pryor who was Officer of the Deck (OOD) for the haul.

The other incident to include here was a larger storm system that we were told on a Tuesday would arrive on Friday. Sure enough, it did. We headed in for cover near Cape Fear, NC. In this case, all fishing stopped and we sailed in an oval pattern keeping the waves to the bow or stern as much as possible. This led to a work stoppage of about 36 hours. In both cases careful calculations were made to keep the crew safe and maximize mission success.

Meet the Crew: Taniya Wallace, Fish Biologist

Taniya and another crew member stand on deck, each wearing life vests, work gloves, and rubber boots. The other crewmember grips a small (2-3 foot long) shark firmly with two hands, holding it at an angle toward Taniya. Taniya grasps the shark's head with her left hand and reaches with her right to remove a hook. Both Taniya and the unnamed crewmember look down at the shark, focused on their work. — Fish biologist Taniya Wallace unhooks a small shark

Taniya Wallace is a fish biologist contractor on the science team here on Oregon II. Taniya hails from Ocean Springs, Mississippi, where she grew up and still lives. Her mother is a teacher and her father works in naval ship design. Taniya credits her 6th grade teacher with first inspiring her interest in science. She says, “Science challenged my mind and made me wonder how things worked.”

After graduating high school, she got a summer internship at the Gulf Coast Research Laboratory where she developed an interest in marine biology. Taniya attended Mississippi Valley State University in Itta Bena, Mississippi. She played softball for her university and they won the Southwestern Athletic Conference championship three years in a row! At Mississippi Valley State, she earned a degree in biology with a minor in chemistry.

Taniya sits at a desk, facing a computer with two monitors. The screen is too bright to make out. She holds a microphone from an intercom system up to her mouth with her left hand, perhaps ready to read out data or provide direction. — Taniya works on a computer

After college she was hired as a contractor during the Deepwater Horizon disaster working on small boats trawling for fish and crustaceans to gather samples for NOAA Fisheries Seafood Inspection program. This was a three month contract.

Next, she was contracted to work with NOAA for the Plankton Unit for the next four years. On the surveys, she worked with the team to collect plankton (microscopic organisms) in three different sized nets. Then, back in the lab, she sorted and identified decapods (crabs, lobster, shrimp) and red snapper.

In 2014, she moved to the trawl survey. In this survey, they pulled a large net behind the boat and caught a variety of marine animals. They sort, identify and record measurements on what they find on the boat. Back at the lab, they would identify unknown species. This included different kinds of fish as well as invertebrates. She explained to me that the science team uses only scientific names so, often, she may not know the common name of species she is cataloging.

Here on the shark and red snapper survey her computer and data entry skills are evident. She catalogs otoliths (ear bones) and other parts quickly and easily. I am not sure if patience, kindness and equanimity are requirements of her job but she, like the other members of the science crew, excels in these qualities. And, her shark handling skills are really impressive.

Personal Log: A very exciting haul!

Every day continues to be full of new experiences and animals. Yesterday, there was a haul which on paper would look pretty boring but it proved to be anything but. First, we brought up a royal sea star ( Astropecten articulatus), a beautiful hand sized star with cream colored feet, with orange edges filled by a deep purple band. I half expected Trey, our lead on the science team, to claim it for Clemson. (Go tigers! Or, is that LSU? Yes, there is a school rivalry playing out among the science team.)

close-up view of a sea star held on the open palm of a gloved hand. the sea star is purple and orange with cream-colored 'feet' that looks like frills. — Royal sea star

Hook number 33 had a feisty seven foot nurse shark. The next shark, a nearly seven foot sandbar shark, was on hook number 43.

Hook number 49 had a baby tiger shark that was being pursued by a great hammerhead. The hammerhead was closing in on its prey when the gangion tightened and the tiger shark was hauled out of the water. I cannot say what was in the hammerhead’s brain, but it was certainly animated. For the next few minutes, it searched in vain for the tiger shark, circling and making several passes on the starboard side of the ship and showing its dorsal fin.

view over the rail of NOAA Ship Oregon II of a hammerhead shark swimming at the surface of the water in the direction of the ship — Hammerhead, thwarted in pursuit

Confusion? Anger? We can only speculate but I can imagine how strange the situation was from the hammerhead’s point of view. “Just another second and then, yum. Wait… where did it go?” I know this is purely unscientific and I am anthropomorphising (giving human characteristics to animals) but it really was a sight to witness.

Now where did that darn fish go? I know its here somewhere.

Later on that same haul, we hooked into a large tiger shark. It is not unusual to see a shark sucker or cobia, maybe two, hanging out around the shark as we bring it in. We have even caught a shark sucker on a hook. But this tiger had at least 10 cobia following it in.

A group of cobia following a tiger shark.
Photo credit: NOAA Corps Lieutenant Junior Grade Cassidy Ring

She was big and had no intention of getting tagged.

She broke the line, and we were not able to measure and tag her. In this haul, only one fish was landed, but each of those events excited all involved and will be remembered and shared long into the future.

Martin rides a stationary bike in the workout room, facing the camera and smilng for a photo. He is wearing a Nokomis Staff t-shirt that reads "We run with the wolves" and a Teacher at Sea hat. A rack full of weights is visible on the floor to his right. — Enjoying some time off shift.

Animals seen: Shark sucker, royal sea star, brittle star, sea fan, nurse shark, cobia, royal tern

Did you know? Sometimes hammerhead sharks swim on their sides.

July 19, 2022

Laura Grimm: Who is driving this ship? July 18, 2022

NOAA Teacher at Sea

Laura Grimm

Aboard NOAA Ship Thomas Jefferson

July 4 – July 22, 2022

Mission: Hydrographic Survey of Lake Erie

Geographic Area of Cruise: Lake Erie

Date: July 18, 2022

Weather Data from the Bridge

Latitude: 42ᵒ 11.6’N

Longitude: 080ᵒ 20.7’ W

Sky Conditions: Overcast (*)

Visibility: 10+ miles

Wind Speed: 20 knots

Wind Direction: 300 NW

Lake Temperature: 22.3 ᵒC

Wave Height: 3-4 ft.

Dry Bulb: 22.6 ᵒC

Wet Bulb: 21.3 ᵒC

Relative Humidity: 92%

A chart of abbreviations for weather terms for sky condition, intensity/proximity, descriptor, precipitation, obscuration, and other — (*) This is a chart of abbreviations that I refer to when I go the the bridge to record the weather .

a section of bathymetric data (color-coded to reflect depth) within polygons overlaid on a political map of Lake Erie off of Presque Isle — *This image shows the progress of the hydrographic survey off the coast of Presque Isle*.

Science and Technology Log

The ship is driven from the Bridge. It is the main control center of the ship. It is driven by a variety of people and computers. People who drive the ship include: the Commanding Officer (CO), Conning Officer (CONN), Officer of the Deck (OOD), and several helmsmen. There are several (at least two) people on the Bridge all the time. If Thomas Jefferson were a six-story building, the Bridge would be on the top floor. Being on the 6^th floor has its pros and cons. Seeing, avoiding, and communicating with other boats in the area is very important. One can see far and wide from up there! One disadvantage is that things really rock ‘n roll up there when we are in heavy seas!

portrait photo of CO Jaskoski on bridge — NOAA Ship *Thomas Jefferson’s* Commanding Officer (CO) Jaskoski

According to a popular career website (Your Free Career Test), “A ship captain is in command of water vessels in lakes, oceans, coastal waters, rivers, or bays. They ensure the safe and efficient operations of vessels. A ship captain navigates their vessel according to weather conditions and uses radar, depth finders, radios, buoys, lights, and even lighthouses. They determine sufficient levels of oxygen, hydraulic fluid, or air pressure of the vessel.”

Are you interested in having a career as a ship captain of a seagoing vessel? Watch the following video to see if you have what it takes!

How about a career at sea?

view of the bridge controls — *The Bridge* has many windows, and is filled with instruments, computers, and reference manuals.

Following are pictures of what is used to navigate and drive the ship. Each picture is followed by a brief description.

a radar screen — *Thomas Jefferson* has two radars

Radar is one of the most important tools on the Bridge. It allows us to see objects, ships, obstructions – basically anything we could run into (on the surface). TJ has two radars. The X-band radar is used for higher resolution pictures and things in closer range. The S-band radar is used to see objects further away.

The Officer of the Deck (OOD) and Conning Officer (CONN) use the Automatic Radar Plotting Aid (ARPA) function of the radar to identify “targets” or other ships in the area. It is used to track their relative motion to see which way and how fast they are headed with respect to TJ. The ARPA calculates the closest point of approach (CPA) and time to CPA. This tells you if there is the potential of a collision. The result is to change course, change speed, contact the other ship, or anything to reduce the risk of a collision.

If there is the potential for a collision, the OOD or CONN may contact the vessel and make a passing arrangement. However, since TJ is conducting operations, they may also make a Security announcement to let other vessels know their whereabouts and status. (Sécurité is French for “security” and is pronounced se-cur-i-tay.) According to Wikipedia, “Of the three distress and urgency calls, Sécurité is the least urgent.

Sécurité: A radio call that usually issues navigational warnings, meteorological warnings, and any other warning needing to be issued that may concern the safety of life at sea yet may not be particularly life-threatening.

Pan-pan: This is the second most important call. This call is made when there is an emergency aboard a vessel, yet there is no immediate danger to life, or the safety of the vessel itself. This includes, but is not limited to injuries on deck, imminent collision that has not yet occurred, or being unsure of vessel’s position.

Mayday: This is the most important call that can be made, since it directly concerns a threat to life or the vessel. Some instances when this call would be made are, but not limited to death, collision, and fire at sea. When the Mayday call is made, the vessel is requiring immediate assistance.”

Last evening, the CONN made a Sécurité announcement because the position, direction, and speed of a dredging vessel and the TJ were at risk of a collision. As soon as the announcement was made, the dredging vessel altered its course and the TJ slowed down a bit. We averted the collision with a very large margin.

A close-up view of one portion of the radar readout (green and yellow numbers on a black background) — *A close-up view of one portion of the radar.*

Above is a close-up view of just one portion of the radar.

HDG = Heading of the ship (per gyrocompass)

SPD = Speed in knots

COG = Course over ground ***

SOG = Speed over ground ***

The yellow numbers represent degrees of latitude and longitude.

(*** These parameters are course and speed after the influence of wind and current have been taken into account.)

Speed at sea is measured in knots. One knot is a unit of speed equal to one nautical mile per hour or approximately 1.15 miles per hour.

Distance at sea is measured in nautical miles. The nautical mile is based on the Earth’s longitude and latitude coordinates, with one nautical mile equaling one minute of latitude. A nautical mile is slightly longer than a mile on land, equaling 1.15 land-measured (or statute) miles.

*A combination of monitors showing and Electronic Charting System (ECS) and the Electronic Chart Display and Information System (ECDIS)*

The lower monitor and keyboard are the Electronic Chart Display and Information System (ECDIS). It displays Electronic Navigation Charts (ENCs). This system allows officers on deck to see where they are in real-time. It can be updated frequently when new information regarding navigation (buoys, obstructions, depths, etc.) are charted. It has all but replaced paper carts.

a control panel — *Search lights and communication systems*

The two panels on the left control the starboard and port side searchlights. Upper right is a fathometer. It is the less sophisticated echo sounder used to measure depth below the keel when we are transiting (moving from place to place) and not surveying.

Lower right, you will find the intercom that is used to communicate between the Bridge and the Data Acquisition desk in the Survey room.

close-up view of a radio control panel — *This communications VHF radio is set on channel 16.*

This radio is used to communicate with other ships in the area. Information to and from the US Coast Guard is also shared through this device.

computer monitor — *This monitor shows where data have been collected.*

This monitor shows what is going on with a software called “Hypack”. It displays data that has been collected. It helps hydrographers and those driving the ship to visually keep track of where data has been collected. Also, it feeds information to the autopilot which allows the ship to stay on the course while surveying, without having to steer in hand or adjust based on distance from the line.

ship's steering wheel, or helm, mounted on bridge — *The ship’s wheel*

This is where the Helmsman stands and steers the ship. The Helmsman takes his/her orders from the Conning Officer. This officer is responsible for instructing the helmsman on the course to steer. Did you know that ships have autopilot? The helmsman steers the ship when it is turning or doing complicated maneuvers. When the ship is traveling in long straight lines (when we are “mowing the lawn”), the helmsman turns on the autopilot affectionately called, “Nav Nav”. It is called this because the Nav button needs to be pushed twice to activate the system.

control panel — *This panel controls the power of the main engine that turns the propeller.*

control panel for the bow thruster — *The bow thruster control panel*

There is a small propeller on the bow called a bow thruster. This panel controls the thruster. It is often used when steering the ship in tight places at slow speeds. I like to think of it as a way to “fine tune” the direction of the ship.

There are many compasses on the ship.

This is the magnetic compass that hangs from the ceiling of the Bridge.
This is the LED display of the main compass used in navigation. It uses gyros.
This is a gyrocompass repeater that allows watch standers to take bearings to other vessels or significant points on land. There is one on each side of the bridge.

How did early people navigate the oceans?

The rudder is found aft (behind) of the propeller. Both are under the ship. The helmsman uses the rudder to turn the ship right or left. The rudder moves using hydraulics. The pointer on the display above moves as the rudder moves.

This dial displays the position of the rudder. The rudder is used to turn the ship.
This gauge is physically attached to the rudder.
The rudder is moved using opposing hydraulic systems.

Personal Log

We have had beautiful weather during this leg of the mission. This morning, we had a beautiful red sky at sunrise.

sunrise over Lake Erie; wake of ship visible — *Red sky in the morning? Should I heed warning?*

You may be familiar with the saying, “Red sky at night, sailor’s delight. Red sky in the morning, sailor’s warning.” The Library of Congress states that this concept is also repeated in Shakespeare and in the Bible.

In Shakespeare’s play Venus and Adonis, “Like a red morn that ever yet betokened, Wreck to the seaman, tempest to the field. Sorrow to the shepherds, woe unto the birds, Gusts and foul flaws to herdmen and to herds.”

In the Bible (Matthew XVI: 2-3,) Jesus said, “When in evening, ye say, it will be fair weather: For the sky is red. And in the morning, it will be foul weather today; for the sky is red and lowering.”

Weather lore has been around since people have needed to predict the weather. Several agencies (NOAA Earth Systems Research Laboratory, Earth Observatory at NASA, and University of Wisconsin-Madison) have studied the science behind this piece of weather lore.

According to the Library of Congress, “When we see a red sky at night, this means that the setting sun is sending its light through a high concentration of dust particles. This usually indicates high pressure and stable air coming in from the west. Basically, good weather will follow.

A red sunrise can mean that a high-pressure system (good weather) has already passed, thus indicating that a storm system (low pressure) may be moving to the east. A morning sky that is deep, fiery red can indicate that there is high water content in the atmosphere. So, rain could be on its way.”

The beautiful sunrise + the NOAA weather report caused people to believe that we might be in for a weather change.

Looks like rain is coming! Batten down the hatches!
Rain clouds in the distance.
After a morning of surveying closer to shore, the launch came home to roost just in case of bad weather.
Right before the rain hit, I saw a monarch butterfly off the stern of the ship. We were about 5 miles from land. (Full disclosure – I did not take this picture.)
Heavy rain, wind, lightning, and higher waves. Weather decks were secured. This meant that no one could go outside until further notice.
The ship’s whistle is sounded one prolonged signal (4-6 seconds) every 2 minutes indicating that we are in an area of reduced visibility.

For the Little Dawgs . . . (Part 1)

Q: Where is Dewey? Hint: Only a very important person on board is allowed to sit in this chair.

Dewey the beanie monkey sits on a leather chair — *Dewey, have you gotten permission to sit there?*

A: Dewey is sitting in the captain’s (Commanding Officer’s) chair in the Bridge. CO Jaskoski gave Dewey permission to sit in the chair . . . just this once because he is so cute.

Dewey the beanie monkey sitting in the captain's chair, full view — *Dewey chill’n out in the CO’s chair*

For the Little Dawgs . . . (Part 2)

Q: Where is Dewey? Hint: This is used by the helmsman to drive the ship.

Dewey the beanie monkey propped up on the helm — *Hang on Dewey! I am afraid that you are too short to do the work of a helmsman.*

A: Dewey is sitting on the wheel in the Bridge. Yes, I am afraid that he is too short to do his job.

broader view of the bridge control panels, with Dewey the beanie monkey on the steering wheel or helm — Watch out all who are in front of the bow! Dewey is trying to drive the ship.

Human-Interest Poll (HIP)

graph of responses to poll: What do you like to do in your free time while on the ship? Read (7 people), talk with family (4), work out (3), play video games (3), other (3) — Other = writing letters, napping, or planning future vacations

Questions from students:

Casey M. asked, “Have you found anything shipwrecks yet?”

LG – Whether we have found something or not, I must respond the same way. It is classified information. I am not allowed to tell you whether we have or have not found anything until I am given permission to do so. Thank you for your curiosity.

Evelyn A. asked, “Have you seen anything that you haven’t seen before on Lake Erie. Also, what is the deepest spot you have seen so far?

LG: During this leg of the survey the deepest we have measured is 28 meters (~ 92 feet) deep. I asked one of my shipmates and she said the deepest she has measured is 999.8 meters (3280 ft or over 1000 yards) deep. That’s deeper than 10 football fields!

I’ve had many new experiences and have seen lots of new things on this voyage. The one that stands out for me is that we found a shipwreck. I cannot tell you where we found it – that’s confidential. It was about 70 meters (230 feet) long – a little shorter than a football field. It looked as if it had been there for a long time.

Gretta S. asked, “Do you ever miss being on land or miss your neighbors (Wink, wink)? How was the movie night? How tall is the ship? Have the waves ever gotten so high you could feel the sea spray on the deck? Have you seen both vertebrates and invertebrates?”

LG: Yes, I miss my family, cats, and neighbors, however, this is a voyage of a lifetime! The movie night was great. I didn’t stay up to watch the whole movie – bedtime called. The ship from “keel to wind birds” is about 100 feet. Yes, the waves have gotten high enough to wash up on to the main deck – especially during a turn. I’ve seen a lot of insects (invertebrates) but few vertebrates unless you count my fellow shipmates and some seagulls!

Josie S. asked, “What is your favorite meal on the ship so far? How do you like sleeping on the top bunk in your room on the ship? Did you see any fish in the lake? Are you allowed to have electronics on the ship? I liked the picture of you and Dewey on the ship!!!! You look happy!”

LG: My favorite meal so far has been prime rib and sweet potatoes. I like sleeping on the top bunk because I have a porthole. My bed is very comfy, and my roommate is nice. I have not seen any fish in the lake; however, we see a lot of seafood in the mess hall (examples: crab legs, cod, grouper, shrimp, oysters, and salmon). Yes, we are allowed to have electronics on the ship. I have my cell phone, computer, a small camera for videos, and voice recorder. We use a lot of technology! I am happy! This has been a wonderful learning experience in so many ways. I cannot wait to share this experience with my students when I return to Dalton. (P.S. I will give Dewey a hug for you.)

Janie S. said, “We were at Kelleys Island last weekend! When we were there, we saw Canada with our binoculars! Could you see Canada? What other foods did you have on the Thomas Jefferson ship? The deepest lake out of the great lakes would be Lake Superior. And the shallowest lakes out of the great lakes would be Lake St. Clair and Lake Erie.”

LG: That is very cool that you got the chance to go to Kelleys Island and see Canada. During the day, we cannot see Canada from where we are surveying. The Operations Officer in Training told me that if you go on the bridge at night, you can see radio towers and lights from the windmills in Canada. We are approximately 19 nautical miles (about 22 statute miles) from the nearest point of land in Canada which is Long Point National Wildlife Area in Norfolk County, Ontario. We stay mostly 4 to 8 nautical miles north of Presque Isle, PA. This link will give you all sorts of information about the depths of the Great Lakes. Did you know that Lake Superior is eight times deeper than Lake Erie! As for the part of your questions about what other foods we have on TJ – I decided just to include a panoramic picture of one of our snack shelves. Just suffice it to say that we are very well fed!

shelf stocked with snacks — A panoramic view of just one of the snack shelves!

Keep those emailed questions coming! I love your questions! Contact me at lgrimm@daltonlocal.org. Be sure to sign your message with your first and last name. Farewell for now!

June 18, 2022June 19, 2022

Jordan Findley: Doin’ Science, June 17, 2022

NOAA Teacher at Sea
Jordan Findley
Aboard NOAA Ship Pisces
June 9-22, 2022

Mission: SEAMAP Reef Fish
Geographic Area of Cruise: Gulf of Mexico
Date: June 17, 2022

Weather Data

Location: 28°05.1 N, 091°53.3 W
Sky: Clear
Temperature: 85 °F
Wind: north, 5 kts.
Waves:

Track NOAA Ship Pisces

Science and Technology Log

We are continuing our path due east. We (they) have surveyed 14 different banks and dropped 102 cameras.

*NERD ALERT*

Along the way we have been collecting water samples that contain environmental DNA (eDNA), and mapping at night. Caroline Hornfeck, graduate student at the University of West Florida, is collecting water samples once daily and at additional fixed sites. She is working under Dr. Alexis Janosik, participating in a multiyear study of reef fish in the Gulf of Mexico with the Florida Fish and Wildlife Conservation Commission (FWC) and NOAA. The project’s goal is to characterize reef fish diversity in the northwest Gulf of Mexico using molecular tools and techniques.

Environmental DNA is a molecular tool used in aquatic ecosystems. eDNA contains DNA from all organisms in the water column. This DNA can be in the form of gametes (reproductive cells), fish scales, waste, etc. This approach is noninvasive and cost-effective, and does not require contact with the organism. Caroline collects test tubes of water, adds some magical juice that causes a chemical reaction, and the DNA begins to solidify in the test tube. You with me? THIS is real science.

Later in the lab, the eDNA is extracted and the samples are run through polymerase chain reaction (PCR). PCR amplifies (multiplies) genes and the sample is sent to a lab for additional science. Fancy technology makes millions of copies of the DNA. You piece it all together and use the data to assess reef fish diversity. Essentially, eDNA is like taking attendance in the reef community. Roll call.

I will leave it at that, though it’s much more complex. I am starting to remember why I avoided molecular biology. Caroline, I’m impressed.

two crewmembers wearing gloves collect water samples from a retrieved camera array — Water collection

Caroline, wearing gloves and seated at a desk in the wet lab, uses a squeeze bottle to add ethanol to a water sample tube — Water collection

Meet the Science Crew

Paul Felts
Field Party Chief, Fisheries Biologist

Field Party Chief Paul Felts holds up two fish sampled during the reef fish survey

What do you enjoy most about your job? “It’s the field work that I enjoy most. I love being out on the water (in moderation), participating in the various surveys. I have been a part of so many fun surveys – reef fish, snapper longlines, trawls, plankton, and mammals. I appreciate getting a break from the desk, reviewing footage, and annotating the research. I also enjoy working with the crew and building team camaraderie.”

What is the coolest animal you have seen or worked with? “It’s tough to decide. I have seen all sorts of cool stuff. One mammal survey we were out on the smaller boat and a sperm whale breached about 100-200 yards from the boat. Later those whales were lying on their sides at the surface with full bellies, seemingly just resting after a meal. The giant stingray and thresher shark are up there on my favorites as well.”

Paul is the Field Party Chief. He’s been with NOAA for 21 years. As a Fisheries Biologist at the Southeast Fisheries Science Center, Paul studies fish populations and their impacts. He knows every fish in the sea (or at least close). Out here, Paul coordinates scientific operations. He has to be on every minute of every day, and deal with the crews’ shenanigans, yet still shows up each morning with a smile on his face, ready to take on the day.

Amanda Ravas
Fisheries Biologist

Fisheries Biologist Amanda Ravas, wearing a hard hat and a life vest, grips the side of a camera array resting on deck

What do you enjoy most about your job? “My favorite part about my job is being out in the field… as long as I’m not seasick. Because I’m still so new, I love learning all the ins and outs of the projects, seeing the species I’ve been watching on our videos in person, and hearing stories from other scientists about all the cool projects they’ve been a part of.”

What is the coolest animal you have seen or worked with? “The coolest animal I’ve seen while out in the field is a manta ray which followed our boat for a few minutes as we were making our transit back ashore. And I always get super excited seeing any shark species while out at sea.”

Amanda is a Fisheries Biologist at the Panama City Laboratory. She’s been with NOAA for two years. She studies fish populations and their impacts. She may be tiny, but she’s mighty. Don’t underestimate her. She knows her stuff, and knows it well, and can keep up with the best of them.

Rafael Ortiz
Program Support Specialist

Program specialist Rafael Ortiz, wearing a hard hat, life vest and gloves, holds a hook over a plastic bucket

What do you enjoy most about your job? “I enjoy being part of the NOAA Fisheries Mission at the MSLABS level. Being an administrator I find myself lucky to participate on various surveys with the scientist. I get to build a great working relationship and many friendships with them. I learn so much from them. Everything from science related topics to personnel life topics. I also feel that they have a higher respect for me than just some admin person.”

What is the coolest animal you have seen or worked with? “Oh so many to list. I’ve seen so much diversity on these surveys that it’s hard to list. I’m always amazed at what comes out of the ocean and the thought of things I’ve not seen or will never see. I’m fascinated by the smallest to the biggest ocean animals.”

Rafael is a Program Support Specialist. He has been with NOAA for seven years. He provides oversight, technical expertise, and support to personnel and field biologists. But don’t let him fool you; he’s a biologist at heart. These scientists are lucky to have him out here at sea. He works hard, and best of all, keeps everyone in good spirits.

Kenneth Wilkinson
Electronics Technician

Electronics technician Kenneth Wilkinson, wewaring a hard hat and life vest, stands by a bandit fishing reel

What do you enjoy most about your job? “All of it. I have done just about every survey – plankton, sharks, small pelagic, reef fish, Caribbean reef fish, and more. I have worked closely with NOAA enforcement, installing vessel monitoring systems and reporting illegal fishing. Surveillance in the Keys was a lot of fun. I enjoyed being down there. Most recently, I operate NOAA drones.”

What is the coolest animal you have seen or worked with? “The first to come to mind is the 12 ft. tiger shark during a longline survey. I also enjoyed building satellite tags and tagging sea turtles.”

Kenny is an Electronics Technician at the Southeast Fisheries Science Center. He has been with NOAA for 32 YEARS. He handles all the equipment from scientific to shipboard navigation and communication. What would we do without Kenny? This survey, as well as most, relies entirely on the technology. Kenny keeps us in check. I mean he’s the only one that knows what a transmissometer is.

Caroline Hornfeck
Graduate Student, University of West Florida

Graduate student Caroline Hornfreck, wearing a hard hat, life vest, and gloves, sits at a desk in the wet lab aligning sample tubes in a styrofoam holder

What do you enjoy most about your job? “What I enjoy most about being a student in this field, is always adapting and learning new skills that can help me grow as a scientist. Whether that’s in the classroom, research lab at the University of West Florida, or aboard NOAA research vessels.”

What is the coolest animal you have seen or worked with? “One of the coolest animals I have seen is a spotted eagle ray. I hope further down in my research career I can work with elasmobranchs (sharks, skates, and rays) and implement better conservation management for keystone species.”

Caroline earned her B.S. in Marine Biology at the University of West Florida. She is pursuing her Master’s at UWF. She is doing real science out here. Are you even a scientist if you don’t collect DNA? This girl is going places for real.

Personal Log

When 2 or 3 o’clock rolls around, I have to shake things up a bit. I’ve started making rounds just to say hello and see what people are up to. I remind folks that what they do is really cool. I make my way to the bridge usually once or twice to bother them a bit. This is where the ship is commanded. It looks like some sort of spaceship up here. I roam around and try to make sense of the many gadgets and screens. Take a peek out the windows. The sun reflects intensely on the water. It’s hella bright out here.

Operations Officer, LT Christopher Duffy, asks “Do you want to drive?” I look over my left shoulder, I look over my right. Oh, he’s talking to me. “Uh, yeah I do.” I have absolutely no clue what I just signed up for. He seems to think I can handle it. I get the run down. The helm is the steering wheel – check. The main engine controls the propulsion – check. Then there are the bow thrusters. From what I understand, they are basically propellers on the side of the boat. I’m not really sure. I just know they improve maneuverability.

Navigation is an art and science. They transit to specific destinations and position and maneuver the ship and make it look easy. Navigators measure the distance on the globe in degrees. If you have forgotten, like I seemed to have, like a circle, the Earth has 360°. Compasses have four cardinal points (directions), right? – North (N), East (E), South (S), and West (W). Well, turns out when you’re real official, you use degrees instead of directions. As if directions weren’t confusing enough. LT Duffy, “When I say 10° right, you do just that and confirm when you’re there.” I can handle that. “Ten right.” I work with LT Duffy to retrieve our next buoy. Huddleston keeps a careful eye. This is fuuunnnnn. “You ready for a hard right?” “Like all the way?” Seems questionable. Oh he’s serious. “Hard right rudder.” SKKKIIIIRRRRRTTTTTTT. Man this thing can move. We Tokyo drift right into position. Nailed it. LT Duffy takes control to finish positioning (I made it easy for him). I’m grinning ear to ear.

“Are you comfortable giving commands?” “Yep.” The overconfidence kicks in. First things first, CONN candy. What’s that you ask? The officers up here have a secret drawer of tasty treats that they’ve been hiding from us this whole time. Gotta have some before taking command. Wait, what am I doing? LT Duffy explains, “You’ll be giving commands to LTJG, Ariane Huddleston, while she steers.” Uhhhhhhh. I see the fear in her eyes. “Just repeat after me.” Huddleston takes the wheel and I “give commands.” It clicks. This is my time to shine. I “very well’d” the heck out of those commands. So much fun, thank you crew!

the helm, the ship's steering wheel, on the bridge — Main Engine

Jordan stands at the bridge — Learning to drive

screenshot of a computer showing the ship's position on a grid — Learning to drive

Did You Know?

You know all those horrid COVID tests you had to take? You were doin’ science right there. The polymerase chain reaction (PCR) tests genetic material (fluid from the nasal swab). The test detects the virus that causes COVID-19. Scientists use the PCR technology to amplify small amounts of RNA from specimens into DNA, which is replicated until SARS-CoV-2 is detectable if present. It’s cool stuff guys.

June 11, 2022June 13, 2022

Jordan Findley: Underway, June 10, 2022

NOAA Teacher at Sea
Jordan Findley
Aboard NOAA Ship Pisces
June 9-22, 2022

Mission: SEAMAP Reef Fish
Geographic Area of Cruise: Gulf of Mexico
Date: June 10, 2022

Weather Data

Partly cloudy
Temperature: 82 °F
Wind: northeast, 10 kt.
Waves: 2 ft.

Track NOAA Ship Pisces

Science and Technology Log

NOAA Ship Pisces will conduct a survey of reef fish located on the U.S. continental shelf and shelf-edge of the Gulf of Mexico (GOM) from April 19 through June 22, 2022 (we are doing the last leg of the survey). 536 sites have been selected to be sampled with Spherical/Satellite array, bandit reels, and CTD during daylight hours and mapping at night.

CTD Operations

CTD casts will be conducted twice a day. CTD stands for conductivity (ability to pass an electrical current), temperature, and depth and it is an instrument that measures just that. The CTD is the key to understanding the physics, chemistry, and biology of the water column. The CTD will also collect water for eDNA (Environmental DNA) sampling. Organisms leave traces of their DNA in their environment (e.g. hair, skin, feces) and from that, scientists can run genetic tests to determine what species are present in a given area.

a conductivity, temperature, and depth (CTD) probe awaits deployment — CTD instruments to measure conductivity, temperature, and depth, as well as other water quality parameters.

A CTD probe, surrounded by an array of water sampling bottles, inside a larger housing. The apparatus sits on deck awaiting deployment. — CTD instruments to measure conductivity, temperature, and depth, as well as other water quality parameters.

Camera Operations

Camera operations will utilize three Spherical/Satellite camera arrays. The cameras are baited and sit on the seafloor for 30 minutes. During the soak, the cameras capture footage of the biodiversity. Scientists use the footage to complete a stock assessment analysis. That data combined with other research helps scientists estimate the abundance of fish populations.

Two spherical/satellite camera arrays on deck: the cameras, at the centers of the arrays, are currently covered with a sack for protection. we can see ropes and a small buoy attached to each. — Spherical/Satellite Camera Arrays to capture video at the seafloor.

close-up view inside one of the camera arrays. the camera lenses, pointing outward in different directions to capture a 360 degree view, are uncovered now. — Spherical/Satellite Camera Arrays to capture video at the seafloor.

Fishing Operations

Bandit reels (basically industrial fishing poles) are deployed after cameras are retrieved. The bandit reels are set up like longlines. The line sits vertically in the water column. When the weighed end of the line reaches the bottom, a surface float is attached to the line. Ten baited hooks are evenly spaced on the bottom 20-30 ft. of the line. All fish captured on the bandit reels are identified, measured, weighed, and have the sex and maturity determined. Select species will have otoliths (ear bones) and gonads collected for age and reproductive research.

a bandit reel, a type of fishing pole attached to gears, is stationed at the corner of the deck — Bandit reels used for fishing.

a closer view of the bandit reel, a type of fishing pole attached to larger gears with a hand crank — Bandit reels used for fishing.

Mapping Operations

Bathymetric mapping (basically 3D mapping of the seafloor) will be conducted in and around selected sites at night with the EM 2040 sonar. Sonar emits sound pulses and detects their return after being reflected. Science is cool. A CTD cast will be conducted to obtain speed-of-sound for proper processing of data.

a bathymetric chart of Southeastern U.S. waters, from Texas to around the east coast of Florida. inshore is shallow, colored in reds and oranges, marking the continental shelf. The deepest portions of the Gulf of Mexico are still much shallower than the Atlantic waters east of Florida. — Bathymetry of the Northern Gulf of Mexico and the Atlantic Ocean East of Florida. Photo courtesy of NOAA Geophysical Data Center.

Personal Log

I was dropped off at my hotel at around 8 PM on Tuesday and could see the ship from the road. It sinks in. (NOT THE SHIP! – This had me laughing out loud.) This is actually happening. Suddenly there’s no time for checking in; I headed straight to the wharf, luggage in tow. Completely awestruck, like a giddy school girl, I proceed to walk up and down the length of the boat numerous times taking an embarrassing number of photos. The crew is just staring at me, I’m sure getting a kick out of this crazy tourist. A lovely gentleman (also geeked about the boat) leaned in, “cool boat, huh?”… I’M GOING ON THAT BOAT THURSDAY. Good lord, Jordan, be cool. I basically screamed in his face. He was the sweetest, and a teacher himself. “I know the trip is going to be everything you wanted.” I melt. Gee thanks, Pat.

Our departure was delayed a few hours, which gave me some time settle in and awkwardly roam the ship. This thing is massive (compared to what I know). I believe it has seven levels. My attempts to open and close doors quickly became a comedy act for any spectators. I was introduced to my roommates at 6 AM. Ain’t nobody trying to chit-chat at 6 AM. I share a stateroom with Amanda Ravas, NOAA Fisheries Biologist, and Caroline Hornfeck, graduate student at the University of West Florida. Caroline is collecting water for eDNA sampling. They are around my age (or at least I’d like to think so), and have been so kind and helpful. It is their first time on Pisces as well, but each are experienced and very knowledgeable. They’ve made me feel right at home, and I feel are going to be a major part of my experience out at sea. Women in science – go team!

Operations Officer (NOAA Corps), LT Christopher Duffy, was so kind as to take me under his wing and invite me to the bridge (control room) to observe departure. This was so cool. Navigation is quite the operation. I guess now that I’ve seen it, duh, this boat is massive and the port was so busy with vessels of all sizes. Seven NOAA officers worked together to get us underway safely. Lots of standing on watch and communication involved. They were constantly shouting commands and numbers, and repeating. All confirmed communication was acknowledged with a “very well.” I found this amusing. One of my favorite lines heard while observing was, “There’s a pleasure boat on the port quarter.” “Very well.”

I will now start saying “very well” in my everyday life.

Last mention for now – I haven’t been seasick (so far)! Those that know me well know that is a major accomplishment for me. (As if I had say in the matter).

I am so happy to be here and to have the opportunity to learn from all of the crew (in every department). I am already so impressed by each of them.

NOAA Ship Pisces in port — NOAA Ship Pisces

a view inside the bridge; we see five NOAA Corps Officers looking at control screens or out the bridge windows — NOAA Ship Pisces

a door with rounded edges and a seal, and a large wheel to open it, marked Keep Closed — Door from the dry lab to the wet lab

Jordan poses for a photo in front of NOAA Ship Pisces in port. She is wearing her NOAA Teacher at Sea hat and a Tampa Bay Watch shirt. — Door from the dry lab to the wet lab

Did You Know?

Well most of us do know that water and electricity make a dangerous pair; but, did you know that it’s not water itself that conducts the electricity? It’s the minerals and such dissolved in it. The saltier the water, the more electricity it conducts. Pure water is actually an excellent insulator and does not conduct electricity, but you will never find pure water in nature. Whoa. I went down a rabbit hole with conductivity.

Also random, but kind of fun, the NOAA Teacher at Sea Program started in 1990, the year I was born. NOAA Ship Pisces was commissioned in 2009, the year I graduated high school.

August 15, 2019August 19, 2019

Linda Kurtz: Navigating Fair Winds and Following Seas – Fairweather Edition, August 13, 2019

NOAA Teacher at Sea

Linda Kurtz

Aboard NOAA Ship Fairweather

August 12-23, 2019

Mission: Cascadia Mapping Project

Geographic Area of Cruise: Northwest Pacific

Date: 8/13/2019

Weather Data from the Bridge

August 12th
Latitude & Longitude: 43^◦ 50.134N, 124◦49.472 W
Windspeed: 19mph
Geographic Area: Northwest Pacific Ocean
Cruise Speed: 12 knots
Sea Temperature 20◦Celcius
Air Temperature 70◦Fahrenheit

Science and Technology Log

Yesterday, we embarked on this Hydrographic Survey Project, leaving Newport and heading out to the Pacific Ocean. The 231-foot Fairweather is manned by 35 people and they are all essential to making this research run smoothly, keeping the ship on course, maintaining the ship, and feeding all of us! Why is this Hydrographic survey mission important? We’ll take a “deep dive” into hydrographic surveys in an upcoming blog, but there are several overlapping reasons why this research is important. On previous hydrographic maps of the sea floor, there are “gaps” in data, not giving scientists and mariners a complete picture of this area. The data is used for nautical safety, setting aside areas where there are likely abundant undersea wildlife as conservation areas, looking at the sea floor to determine if areas are good for wind turbine placement, and most importantly to the residents off the Pacific coast, locating fault lines –especially subduction zones, which can generate the largest earthquakes and cause dangerous tsunamis. More about this and the science of Hydrography in a later post. For now, we’ll focus on Navigation.

Science Word of the day: NAVIGATION

The word NAVIGATION is a noun, defined: the process or activity of accurately ascertaining one’s position and planning and following a route.

synonyms:

helmsmanship, steersmanship, seamanship, map-reading, chart-reading, wayfinding. “Cooper learned the skills of navigation.”

Time to leave port: 12:30 pm August 12^th:

As we were pulling away from the dock and headed out of Newport, someone was navigating this very large ship through narrow spaces, avoiding other boats, crab traps, and other hazards, and I began wondering… who is driving this ship and what tools do they have to help them navigate and keep us safe? Navigation is the science of “finding your way to a specific destination.” So, I made way to the bridge to find out. There was so much to learn, and the bridge crew was very patient taking me through who worked on the bridge as well as the various tools and technological resources they used to guide the Fairweather exactly where it needed to be. First the humans who run the ship, then the tools!

On the bridge you have 3 key members in charge of navigation and steering the boat. These are not to be confused with the CO or Commanding Officer who always oversees the ship but may always not always be present on the bridge (or deck). The CO is kind of like a principal in a school (if the school were floating and had to avoid other buildings and large mammals of course.)

1^st in charge of the bridge watch is the OOD or Officer of the Deck. The OOD is responsible for making all the safety decisions on the deck, giving commands on how to avoid other vessels and wildlife such as whales! The OOD oversees the deck and reports regularly to the CO as needed.

2^nd in charge of the bridge watch is the JOOD or Junior Officer of the Deck. The Junior Officer is responsible to the CO and OOD and uses both technology driven location data and plot mapping with paper to locate the position of the ship and use that location to plan the course for the ship.

The 3^rd member of the bridge team is the helmsman. The helmsman is the person who is actually driving the ship while following the commands of the OOD and JOOD. Tools the helmsman uses include magnetic compasses on deck and electronic heading readouts to adjust course to stay on a particular heading (or direction of travel.) The helmsman has another duty as lookout. The lookout watches the ocean in front of the ship for land objects (we saw a lighthouse today), ocean mammals such as whales (we’ve seen 3 so far) or debris in the ocean so Fairweather can navigate around them.

Officer of the Deck (OOD): Kevin Tennyson

Calderon and Ostermyer — Junior Officer of the Deck (JOOD) Jeff Calderon and Helmsman Terry Ostermyer

There are so many devices on the bridge, I’ll share a few of them and their functions. This blog post would take DAYS to read if we went over them all!

Let’s explore: what tools does the crew aboard Fairweather use for NAVIGATION?

Radar is a system that uses waves of energy to sense objects. These waves are in the form of high frequency radio waves which can find a faraway object and tell how fast it is moving.

Radar is very useful because it can sense objects even at night and through thick clouds. Radar helps the Fairweather navigate by detecting objects and vessels in the immediate area. On Fairweather, you can see the objects that are near or could be in the determined path of travel.

Close up of RADAR screen showing blue lines (indicative of speed) trailing other detected objects

While the picture above shows where the objects and vessels are, the “blue trail” shows how far they have traveled in 6 minutes. A longer blue trail means a faster moving vessel and a shorter or no tail means little or no movement. This tool also helps the Fairweather crew determine the path of travel of the other vessels so they can either navigate around or warn the other vessel of the Fairweather’s heading.

Fairweather bridge crew also must follow what STEM students call the 4C’s: Communication, Collaboration, Critical Thinking, & Creativity.

To communicate while at sea, the crew must communicate via radio.

Notice the abbreviations for the MF/HF or Medium Frequency/High Frequency, which has the longest range and you can communicate via voice or text. VHF or Very High Frequency are voice radios only. Marine VHF radios work on a line-of-sight basis. That is, they can transmit and receive to and from another antenna as long as that antenna is above the horizon. How far is that? Standing on the bridge of a ship, the distance to the horizon is usually about 10-12 miles. So, if there is a vessel within that 10-12 mile or so range, the Fairweather crew can communicate with them via the VHF radio.

Weather Tools:

It is crucial to gather weather data and analyze the information from various weather instruments onboard to keep the Fairweather safe. Sopecreek Elementary has a Weather Station too! As you look through the photos below, see if you can find what weather instruments (and readings) Fairweather uses and compare and contrast with Sopecreek’s WEATHER STEM station! What type of instruments do you think are the same, and which are different?

weather data updates — Weather data updates – the ship can NAVIGATE to avoid dangerous weather

With all of tools discussed above, the Fairweather is approaching the Cascadia Margin that needs to be surveyed using science of Hydrography and Bathymetry (more about those concepts coming soon!)

The area to be survey has already been identified, now the ship must approach the area (the red polygon in the middle of the screenshot below). Now the crew must plot a course to cover the area in horizontal “swaths” to aid in accurate mapping. The bridge and the hydrographic survey team collaborate and communicate about speed, distance between horizontal lines, and timing of turns.

See the initial area to mapped and the progress made in the first two days in the pictures below!

Cascadia Margin chart — Cascadia Margin: 1st Region the Fairweather is mapping

mapping progress — Progress mapping – navigation the survey area – colored lines indicate where the ship has been

Personal Log

It’s been a great start to this Teacher at Sea adventure! There is so much to take in and share with my students (I miss you so much!) and my fellow teachers from across the country! Today, we went from sunny skies and calm 2-4 foot seas, to foggy conditions and 6-8 foot seas! The ship is definitely moving today! I keep thinking about STEM activities to secure items and then testing against the varying degree of pitch on the ship! For safety, the entire crew is tying up any loose items and securing all things on board, we’ll have to think of STEM challenges to simulate this for sure!

Did You Know?

When steering a ship, an unwritten rule is you don’t want the speed of the ship (in KNOTS) and the degree of the turn of the rudder (in DEGREES) to exceed the number 30!

Question of the Day:

How many possible combinations of KNOTS and DEGREES are there? Can you draw or plot out what that would look like?

New Terms/Phrases:

Thermosalinigraph: Measures the temperature and salinity of the water.

Challenge yourself: see if you can learn and apply the terms below and add new terms from this blog or from your research to the list!

ECDIS: Electronic chart display information system

Longitude and Latitude

True North

Magnetic North

Animals Seen Today:

Dall’s Porpoise

Humpback Whale

Curious about STEM Careers with NOAA? All the officers on deck had a background in some type of science but none were the same. Everyone on board comes from different backgrounds but are united by the OJT (On the Job Training) and the common purpose of the hydrographic survey mission. Learn more here: https://www.noaa.gov/education