Tag: CTD

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Gail Tang: Contemplating the Enormity of the Minuscule, August 14, 2023

NOAA Teacher at Sea

Gail Tang

Aboard NOAA Ship Oscar Elton Sette

August 4, 2023 – September 1, 2023

Mission: Hawaiian Islands Cetacean and Ecosystem Assessment Survey (HICEAS)

Geographic Area of Cruise: Hawaiian archipelago

Date: Tuesday August 8, 2023 

Weather Data from the Bridge

Temperature: 27.06° C

Latitude: 29°53’0” N 

Longitude; 174°24’0”W

Science and Technology Log with Career Highlights

Previously, I wrote about the day-time operations focused on surveying whales, dolphins, and birds. Through the 25-powered binoculars (big eyes), the large mammals in the distance look microscopic. Now, the sun has set and I take us underwater to learn about the tiny world of ichthyoplankton, magnified to reveal intricate details of their exquisite structures.   

Weather permitting, Nich Sucher (Survey Technician) works with the deck crew to deploy the CTD, which measures conductivity, temperature, and depth. This information is used to help scientists understand the physical, chemical, and biological changes of the ocean to help inform them of environmental changes. For example, Nich explained that data from CTDs are used to better understand why tuna were migrating away from Hawaii and towards California. The data can help answer whether the tuna are moving north for access to more oxygen in the water or for cooler temperatures. On our project, we deploy the CTD down to 1000m because that is where some of our deep diving cetacean species feed. Also, the temperature & pressure affects how sound travels through the water. This information can be used to calculate the speed of sound at different depths.

a view down the starboard rail of NOAA Ship Oscar Elton Sette. We see Logan, wearing a hard hat and life vest and facing away from us, lean his right arm over the rail. He looks down at the water as the CTD apparatus descends below the purple-blue surface of the water. In the distance, the sun has just set over the horizon, leaving orange, yellow, pink, purple skies dotted with a few scattered clouds.
Logan Gary (Able-bodied Seaman) deploys the CTD at sunset. Photo Credit: Gail Tang

Nich wanted to work for NOAA since he was in middle school! In high school he fell in love with fish. Initially he went to college in Iowa for soccer and then transferred to Carthage College, in Kenosha, Wisconsin to study environmental science, conservation and ecology. Nich did an independent study with his aquatic ecology professor on a coral reef project in Roatan, Hondurus. His senior thesis investigated the feasibility of releasing captive-bred axolotl (an adorable salamander that’s critically endangered and possibly extinct in nature) into the wild. After college, he had a job at an aquarium, and while he temped at US Fish and Wildlife studying chub and salmon, NOAA reached out about his job application. He started in January 2022 on the NOAA Ship Oscar Elton Sette!

Nich, wearing a hard hat, life vest, and an illuminated flashlight attached to his vest, looks straight at the camera as he holds up with both hands a styrofoam head decorated with marker designs and compressed (by water pressure) from its original size.
Nich Sucher (Survey Technician) with recently pressure-shrunken styrofoam head. Photo Credit: Fionna Matheson (Commanding Officer)

Since the CTD is deployed to 1000m, a common extracurricular activity is to attach styrofoam objects to the instrument because they shrink as a result of the pressure! On a previous leg, Commanding Officer Fionna Matheson shrunk a styrofoam head, which can be seen in the picture of Nich above. A few of us shrunk decorated styrofoam cups.

photo of a hand holding up a full-size styrofoam cup, upside down. it's decorated with many triangles drawn in black marker. the rim of the cup reads HICEAS 2023. we can see a view of a deck beyond.
Regular-sized styrofoam cup with Sierpiński’s Triangle Design
photo of a hand holding up a compressed styrofoam cup, upside down. it's decorated with many triangles drawn in black marker. the rim of the cup reads HICEAS 2023. we can see a view of a lab beyond.
Pressure-shrunk styrofoam cup
photo of a hand holding up a compressed styrofoam cup, upside down, above a regular white styrofoam cup, upside down. the top cup is decorated with many triangles drawn in black marker. the rim of the cup reads HICEAS 2023. we can see a view of the ocean beyond.
Regular and shrunk styrofoam cups for size comparison
a hand holds up a stack of four upside-down compressed styrofoam cups, decorated, top to bottom, as purple design, smiley face, triangles, orca with hearts.
Artist of the cup from top to bottom: Jennifer McCullough (Lead Acoustician), Erik Norris (Acoustician), Gail Tang (Teacher at Sea), Alexa Gonzalez (Acoustician). Photo Credit: Gail Tang

The whole process of the CTD deployment and retrieval takes about an hour to an hour and a half. The Isaacs-Kidd Midwater Trawl (IKMT) net tow usually follows. Jessie Perelman and Dre Schmidt are the plankton researchers on board this leg of HICEAS. Most nights, we do 2-3 tows of the net. (They are affectionately called a “tow-yo” because the net gets towed in and out several times.) They use an inclinometer, a.k.a. angled angle, to measure the angle of the line (see picture below) and then confer with a chart to determine the length of the line needed to reach the desired depth. The chart is a good way to avoid on-the-spot trigonometric calculations. But it’s a good exercise to ask yourself anyway: if you know the desired depth and the angle, how would you calculate the length of the line needed?

Dre stands on deck at night, facing away from the camera, over the rail. She wears a jacket, a life vest, and a hard hat. Beyond her, we see a davit arm leaning over the water and a cable (attached to the net) extending at an angle off to the right. With her right arm, Dre holds out an angled angle - it's a metal semicircle, like a protractor, with a swinging arm attached at the center point of the straight edge. Dre holds it by a handle, lining the straight edge parallel to the extended cable. The swinging arm hangs straight down to the ship. Dre can read the resulting angle in the markings on the semicircle.
Dre Schmidt measuring with the angled angle. Photo Credit: Gail Tang

After the tows, we bring the larvae into the wet lab and the fun begins. The goal is to sort out the fish larvae from the other larvae. Truthfully, I am not very good at sorting the fish and I just like to look at the organisms under the microscope. The most awe-inspiring creatures I saw under the scope were the shelled pteropods (sea butterflies) and a juvenile sea star that, according to Dre, may have recently morphed from the larval stage. With the naked eye, they look like marks made with a sharp pencil, but under the scope, the enormity of their existence is profoundly moving. While I could not capture these beauties in a photograph, I was able to capture other creatures.

view through a microscope of a phronima animal living inside a (clear, jelly-like) salp.
Phromina living inside a salp. Photo Credit: Gail Tang
view through a microscope of a tiny squid and a polycheate worm.
Polychaete and squid. Photo Credit: Gail Tang
view through a microscope of a tiny squid surrounded by other, unidentified organisms. the squid's large purple eyes stand out.
Squid

Personal/Food Log with Career Highlights

As I fall into a daily routine, I periodically need small bits of irregularity for stimulation. This week, I was privileged enough to work with Chef Chris. Chef Chris is originally from north Philadelphia. In the absence of cable during childhood, he watched cooking shows like Yan Can Cook, Frugal Gourmet, and Julia Child on PBS. He started off cooking on NOAA Ship Rainier and now is the Chief Steward on NOAA Ship Oscar Elton Sette. We collaborated to make some pork dumplings and vegetable spring rolls for everyone. I cook at home often, but not for so many people, so Chris was essential in helping me scale up the dishes. We bonded over not measuring out ingredients so here is approximately the two recipes we used.

Chris, wearing a black chef's cap, stands at a large fryer in the galley. he's cooking three foods - eggs, pork, onions in large piles - and he reaches toward them with a spatula or perhaps a large knife.
Chief Steward Christopher Williams cooking the eggroll fillings. Photo Credit: Gail Tang

Pork Dumpling Filling

  • 5 lbs of ground pork (when my mom makes these, we use a mix of lean ground pork and fatty ground pork)
  • Mirin (I use Shaioxing wine, but mirin is a good substitute!)
  • Soy sauce (we used Kikkoman; I like to use Pearl River Bridge Light Soy)
  • Green onions
  • Sugar
a plateful of prepared (but not yet friend) pork dumplings
The most gorgeous dumplings
a cafeteria-style pan of perfectly fried pork dumplings
The most satisfying dumplings

Egg Roll Filling

  • Green cabbage
  • Red Cabbage
  • Carrots
  • Mushrooms
  • Soy sauce
  • Hoisin
a sheet pan of about 30 wrapped but uncooked egg rolls
Freshly wrapped vegetarian egg rolls
a cafeteria style pan of fried egg rolls
Freshly fried vegetarian egg rolls

Several of us worked together to help fold the dumplings and egg rolls. I delighted in the number of different hands that contributed to feeding our community. Chef Chris expertly cooked everything and it was all gobbled up!

Chris and Gail, sitting across from one another at a table, each hold up a freshly-rolled dumping to show off. we can see a large metal bowl of pork filling on the table between them.
Chef Chris Williams and Gail Tang
Four people around a table in the mess with a plate full of wrapped dumplings and dough circles and a bowl of pork filling.
Jessie Perelman, Matt Benes, Gail Tang, Dre Schmidt wrapping dumplings
four people around a table wrapping egg rolls; there's a large bowl of filling, a tray of completed rolls, and two rolls in progress.
Gail Tang, Octavio De Mena, Jamie Delgado, Jessie Perelman rolling eggrolls

At night, I assist Jessie Perelman and Dre Schimdt with their plankton research. They were the first to come by to help fold dumplings. Jessie did her undergraduate work in biological science at University of Southern California (USC) with a plan to go to veterinary school. She worked in a marine science lab at USC, and then studied abroad in Australia to take more marine biology classes not available at USC. After she graduated, she got a job as research assistant at Wood’s Hole Oceanographic Institution, where she solidified her passion for research. She applied for graduate school and ended up at the University of Hawaii studying biological oceanography. Her dissertation focused on oceanographic influences on mesopelagic communities across eastern Pacific Ocean using insights from active acoustics, nets, and other sampling techniques. An interesting interdisciplinary part of her background includes learning about international policy on issues like deep sea mining. The international meetings with delegates were very informative for her. She’s also worked on science communication writing, such as science blogging. In Fall 2022, Jessie started as a Marine Ecosystem Research Analyst at NOAA!

Dre Schmidt received her bachelors in biology at Florida State University. She took Calculus, Mathematical Modeling for Biology, Analysis and Statistical Design, and Physics to supplement her biology degree. She volunteered at a research lab on campus and after college, took a couple of years off to work in marine science education for 5th grade to college level students. She went for her master’s degree in Kiel, Germany to study physiological effects of low-level warming on coral and their larvae. She has been at NOAA for 2 years, first as a research associate and now as an essential fish habitat coordinator. What she loves about her job is the variety of responsibilities. She keeps busy by sorting plankton, doing genetics lab work, analyzing data in R, writing up results, and going to sea! Engaging in these different tasks help to activate different parts of the brain, which I can totally relate to! Her advice to students is to know your worth and ask for what you deserve. Her favorite fish larva is the very ugly Centrobranchus andreae simply because her name is found within the name of the organism. I can’t blame her because my favorite flower is the Gaillardia for the same reason.

Andrea, wearing a mask, stands for a photo in front of a screen displaying a larval fish
Andrea with Andrea

Matt Benes (Able-bodied Seaman and Deck Boss) took a break in his duties to fold some dumplings with us. Though Matt declined to be interviewed, I can tell you we share a deep appreciation for food as a mechanism for cultural, historical, and political understanding.

Jamie Delgado (Medical Officer) joined in on the egg roll wrapping. Jamie received her bachelor’s in science and nursing at Rutgers University. She joined the Public Health Service (PHS), and worked at the Indian Health Service (IHS) in northern Arizona. Later, she worked at the National Institutes of Health (NIH) as a research nurse specialist.  Jamie earned her Doctor of Nursing at University of Maryland before coming to NOAA as ship medical officer. Jamie has so much good financial advice about scholarships and loan repayments programs. Check out these links to learn more:

She also shared that you can retire in a total of 20 years with uniformed services, you get a pension, healthcare benefits, a housing allowance, a food allowance, 30 days paid leave, and unlimited sick leave. Jamie has been in service for 10 years, and with NOAA for 1 year and 5 months.

Jamie also helped me out during our in-port during Leg 1. Snorkeling had dislodged some ear wax and clogged my ear for a couple of days making daily life really uncomfortable. Jason Dlugos’s (3rd Assistant Engineer) “ear beer” helped, but I was still off balance. Jamie had to endure the task of flushing my ear out over the course of two days. Eventually, I did have to go to urgent care to get the rest out. Now I’m 100%!

Last but never least, Octavio De Mena, a.k.a OC, (General Vessel Assistant in the Deck Department) came by to roll some egg rolls. He is originally from the Republic of Panama and loves classic rock music. While we have no intersection in our movie tastes, we share some similarities in the food we ate growing up due to the large Chinese population in Panama. According to the Harvard Review of Latin America, the first Chinese immigrants arrived in Panama in 1854 to build the Trans-Isthmian Railroad. The inhumane treatment and disregard for the workers’ welfare is reminiscent of the situation a decade later with the Transcontinental Railway in the United States. This convergence of cultures led to haw flakes and dried plums in both our childhoods!

OC was an aircraft mechanic in the military reserves, and a security contractor in Latin America. He decided to come back to the U.S. to fulfill his dream job as a professional mariner. On his journey in pursuing his dream, he volunteered for the civil air patrol, and served as an auxiliary for search and rescue flying small Cessnas. He saw a NOAA ship at this job which prompted a search for a position within NOAA. He has been on the NOAA Ship Oscar Elton Sette since February 2023. On the ship, OC and I are regulars in the forward mess. Sometimes having opposite tastes works out in your f(l)avor, as I get to eat OC’s tomatoes and watermelon jolly ranchers.

Did you know?

You can track us! Visit this site to see where we currently are: https://www.windy.com/station/ship-wtee?26.549,-172.551,5

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Germaine Thomas: The Adventure Begins Aboard NOAA Ship Oscar Dyson, August 7, 2023

NOAA Teacher at Sea

Germaine Thomas (she/her)

Aboard NOAA Ship Oscar Dyson

August 7 – August 21, 2023

Mission: Acoustic Trawl Survey (Leg 3 of 3)
Geographic Area of Cruise: Pacific Ocean/ Gulf of Alaska
Date: Monday August 7, 2023

Weather Data
Lat 58.31 N, Lon 151.58 W
Sky condition: cloudy
Wind Speed: 12.43 knots
Wind Direction: 357.55°
Sea Wave height: 1 ft | Swell: 340°, 1-2 ft
Air Temp: 12.35 °C

Science log

The purpose of this trip is acoustic trawl sampling for pollock (Gadus chalchogrammus). There are other projects that people are working on during this leg that I will report on in other upcoming blogs.

Today, at about 5:30 pm we deployed a CTD (Conductivity, Temperature and Depth – Probe). This probe measures the salinity using conductivity, the temperature with a digital thermometer, and records the data all at different depths in the water column. This CTD also records fluorescence which is an easy way to determine the amount of plankton present. The plankton at the surface are producers and have chlorophyll, which reacts to fluorescence and can be recorded. This information will be important when we start taking trawl samples, so the ships crew will routinely send out the CTD while we cover our transects.

Watch the videos below of the crew members deploying and recovering the CTD.

Crew members deploying the CTD
Recapturing the CTD

The data from the CTD collection are shown on the picture of the computer screen below:

a photo of a computer monitor showing a screen with three graphs in a row. The first depicts fluorescence (indicating chlorophyll levels) and turbidity v. depth. Chlorophyll levels start out high toward the surface but asymptote toward zero as the probe travels deeper. The central graph is blank. The third depicts salinity and temperature v depth. Salinity stays largely constant, but it does gradually increase with depth. Temperature is higher toward the surface, declines quickly and then slowly with depth.
CTD Data: Fluorescence, or Chlorophyll (green) and Turbidity (orange) v. Depth on the first graph, and Salinity (yellow) and Temperature (blue) v. Depth on the third graph.

The data from the CTD are presented in graphical form. The first frame shows chlorophyll, which is the green line. The second frame is percent oxygen (which they were not measuring so it remains zero). The third frame shows salinity (yellow line) and water temperature (blue line).

Personal log

Currently we are cruising out to our transect destinations over the continental shelf. The seas are a little rough (6-8 foot waves) and I am enjoying some saltine crackers that help with mild sea sickness.  It has been a while since I have been in a large boat in rolling seas.

Three days ago, I flew from Anchorage to Kodiak Island on an a sunny afternoon and met the science team for the cruise. The whole team was extremely welcoming, sharing stories of past cruises, colorful characters and the science behind acoustic trawl sampling. Later, they invited me to go surfing the next day at a beach on the far side of the island.

Through the camaraderie of playing in the waves I was introduced to these amazing people and their knowledge and love of the ocean. They are very professional and willing to share what they are studying.  They also have a deep concern for the changes occurring in the ocean and honestly hope that their information can be shared and understood in order to mitigate the impact of change.  Sitting on my surfboard I quickly learned I was the beginner, and they were the experts. With the experience of time, they would effortlessly snap up and slice through the waves.  Smiles and whoops encouraged each other as the sea crashed into the beach.

Four surfers sit on surfboards, facing away from the camera, awaiting the next wave. Beyond the surfers we see a line of mountains. The image is a color palette of grays: gray cloudy sky, gray ocean, dark gray-blue mountains.
Surfing off of Kodiak Island. Photo credit: Mathew Phillips
A surfer rides a wave back toward shore. We can see a mountain, part of Kodiak Island, behind the surfer. Both the sky and the ocean are gray.
Surfing off of Kodiak Island. Photo credit: Mathew Phillips

Surf photos courtesy of Mathew Phillips

The next day was spent with the science crew getting ready to bring aboard equipment they will be using, accessing and streamlining the information they need for the data collection, and also a little bit more shore time with fishing and hiking. I hiked up a local mountain called Pyramid.

Overall this has been a great start for a wonderful trip. I love to get my students outside experiencing the real world. After a year of taking both Oceanography and Marine Biology my students get to touch, see and smell the ocean through a field trip. They get to see marine birds and mammals, touch and taste icebergs and smell the brine scent of the ocean. They also get a chance to apply the knowledge and skills that they have learned in my class. The NOAA as Teacher at Sea Program is my field trip. I get to see the science and technology in action and share it with my students, friends and family. Thanks so much for letting me play!

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Martin McClure: Starting the Survey, July 30, 2023

NOAA Teacher at Sea

Martin McClure

NOAA Ship Oregon II

July 25– August 9, 2023

Mission: Shark/Red Snapper Bottom Longline Survey

Geographic Area of Cruise: Gulf of Mexico/Atlantic Ocean

Date: July 30, 2023

Latitude: 31°21.967’N

Lonfitude: 80°12.135’W

Air Temperature: 27.5° C.

Wind Speed: 6.79 kph

Science and Technology Log: Longline Fishing

Teacher at Sea Stephen Kade created this graphic to help explain longline fishing.

We have started the longline survey and it is well organized and exciting. The first part of the process is called the set. We start the fishing process by baiting circle hooks. These hooks are attached to a 12 foot length of 3 mm line called a gangion (gan-jin). We use mackerel for bait. Each piece of fish is hooked through a circle hook.

Circle hooks ready for baiting

Next we drop over a buoy with a radar reflector on top called a hi flier. Attached to this is a 4 mm line called the main line. Then a weight is attached to the line and dropped. This anchors the beginning of the fishing line to the seafloor. Next, a numbered clip is attached to each gangion. The gangions are attached to the main line in order from 1- 50. A second weight is then attached to the main line and the process is repeated with gangions numbered 51- 100. A third weight is then attached to anchor this end of the line to the seafloor.

Tagging and attaching the gangions

Finally, a second hi flier buoy is attached and released to mark the end of the line.  As each of these steps is done a member of the team records it on a computer. This gives a precise time that each baited hook went in the water as well as when and where the anchors and buoys were released. 

Ready to drop the hi flyer

The next step is to take water measurements. This is done with a remarkable device called a CTD. CTD stands for conductivity, temperature and depth. Conductivity is related to how much salt is in the water (salinity) and is related to how well it will conduct electricity. It also measures the temperature and depth of the ocean at that spot. We attach a camera to it to see what the seafloor is made of at that spot. We want to know if it is a sandy bottom, sea grass, muddy, etc.  

The CTD


Then we wait one hour. 


The second part of the process is called the haul. The haul is simply the set done in reverse, except that we often catch fish. The fishermen use a grappling hook to retrieve the main line attached to the hi flier.

Grappling hook ready to thrown

When it is brought on board, the main line is attached to a winch. The winch is used to pull the main line up of the seafloor. As the main line is pulled in the gangions are detached and replaced in a barrel, the numbered clips are detached and kept on a line in number order. That way,  everything is ready to be used for the next set. Whatever is on, or not on, the hook is recorded on the computer. If the bait is missing or damaged is noted.

Weighing a barracuda

Any fish caught is noted on the computer and the team jumps into action. For sharks there are several things that happen. They are identified by species. The hook is removed and the shark is weighed. It is then measured for three different lengths, precaudal (before the tail fin), fork (at the fork in the tail, and total (the end of the tail fin). The sex, male or female,  and maturity is determined. Tissue samples are taken by cutting off a small piece of a fin. This tissue sample is placed in a small plastic vial and labeled. They are also often given a numbered tag. This information is all recorded and entered into the computer. 

Me, tagging a sandbar shark.

Meet the Crew: Lieutenant James Freed

NOAA Corps Lieutenant James Freed is the operations officer for the Oregon II. He has many responsibilities as part of his job. Part of his job is to liaison, or maintain communication, between the science party and the ship’s commanding officer (CO). That means making sure that everything that the science team needs is on the ship. If the science team has needs then we would go through him and not directly to the CO. As Operations Officer he is also in charge of organizing materials when they come aboard the ship. He posts the Plan of the Day which lets everyone on board know what to expect that day. Lieutenant Freed coordinates port logistics for the ship. This means he coordinates the loading and unloading of materials. His duties also include acting as Officer of the Deck (OOD). During this 4 hour shift he is responsible for the ship’s navigation and safety. His emergency response assignments on the Oregon II include being the nozzleman on the fire team, launching life rafts for abandon ship and he goes out on the rescue boat for man overboard. 
Lieutenant Freed grew up in Santa Rosa, California. He attended Santa Rosa Junior College and then transferred to University of California, Santa Cruz where he studied marine biology. During this time he worked as an intern on a fishing vessel and this is where he first heard about the NOAA Corps. He has now been in the NOAA Corps for 6 years. Before being assigned to the Oregon II he was first assigned to the NOAA Ship Bell M. Shimada in Newport, Oregon. He then moved to Seattle working with the Marine Mammal Laboratory at Alaska Fisheries Science Center. For this assignment his duties were quite varied. They included doing a lot of field work, flying drones, and doing whale biopsies. 
Lieutenant Freed is clearly enthusiastic about his career in the NOAA Corps. He describes it as an “incredible career” that supports his growth with leadership and management training. The NOAA Corps is growing with new ships and aircraft and will need to recruit new members.. The ships participate in a wide variety of tasks including fisheries research, oceanographic and atmospheric data collection and hydrographic mapping. 

Personal Log

Well these last few days have been quite a transition. After 2 1/2 days of transit from Pascagoula, MS to Miami. It was a bit shocking to see how the skyline has changed after 40+ years. It has grown, to say the least. We started fishing just north of Miami. The 10 person science team is split into two shifts. I am on the “day” shift. We work from noon to midnight. These long shifts are filled with alternating periods of activity and waiting. After the set we wait for an hour before the haul. Then, depending on where the next set is, there will be another wait of between two to three hours. The hauls seem to follow the same patterns. As the mile of line is reeled in, there are long periods with not much happening. Then, there might be three fish online within a few hooks. Last night it was two baby tiger sharks and a 1200 mm (3 ft. 11 in.) barracuda within about 5 minutes. When there is a shark too big to haul up by hand on the gangion, the crane is used. We all don hardhats, the crane is moved into place and everyone is busy taking measurements, preparing tags, and taking tissue samples. I was warned to bring a lot of reading material for the down time and I did that. However, with so many things to learn, interesting people to talk to, and beautiful scenery to watch, I have had little time for boredom to creep in.

Ready to release a baby tiger shark.

One of the most common questions that I had before I left concerned getting motion sick. Dare I utter the word… seasick. So far, I have been lucky… hmm, I can’t seem to find any wood around here to knock on. I started the voyage with what I consider to be a rational decision, take the Dramamine. We started with two days of beautiful weather. By the first sign of rough seas I had stopped taking the Dramamine so I went outside and watched the horizon for about an hour. I decided that watching the horizon on a beautiful day at sea had no drawbacks. I never did feel nauseaus. Some people recomended that I buy the accupressure bands which I did. When seas get rough and I am inside I will sometimes wear those. I have not been seasick, yet. I still take precautions like not doing computer work inside when in rough seas but so far I have been fine. In fact, as far as I know none of the volunteers or crew have been sick.

I cannot end this blog without acknowledging the stewards in the gally and the impressive menu available at each meal. I think that there are always three choices for a main dish and a variety of sides. Additonally, a salad bar is always available, snacks, and my favorite, ice cream.

Just one of three delicious options that night

Animals seen: sea turtle, dolphin, snake fish, spotted eel, barracuda, shark sucker. Sharks: sandbar shark, tiger shark, Atlantic sharpnose shark, scalloped hammerhead

shame faced crab

Did you know?

Most of the fish that we catch have parasites living in and on them?

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Elli Simonen: Data, Calibrating Data and Surveying, July 15, 2023

NOAA Teacher at Sea

Elli Simonen (she/her)

Aboard NOAA Ship Fairweather

July 10, 2023 – July 28, 2023

Mission:  Hydrographic Survey of the Pribilof Islands 

Geographic Area of Cruise: Pribilof Islands, Alaska

Date: July 16, 2023

Weather Data

Location: 55’21.02° N, 161’02.02° W

Outside temperature: 11°C

Water temperature: 10°C

True Winds:  337°, 6.5 kts

Skies: Overcast and Cloudy

Science and Technology Log

What is Surveying?

I was in port with the NOAA Ship Fairweather for a little under a week but right now we are en route to the Pribilof Islands.  During the time at port, the survey team surveyed surrounding areas, calibrated equipment and practiced troubleshooting survey systems. The goal of surveying is to gather the bathymetry data of the seafloor, or the depths and shape of the seafloor. 


Surveying equipment is located on NOAA Ship Fairweather as well as four smaller boats called survey launches, which each get deployed from the ship.  Depending on the mission, sea conditions and the project plan, the ship or launches may both be used, or a combination of both. 


Global Positioning System (GPS) records position. The Inertial Measurement Units (IMU) measures the motion of the ship.   Multibeam Echosounder (MBES) is when sound is pinged from a vessel to the seafloor and the time lapse is used to determine the depth of the seafloor.  MBES is a type of sonar that uses multiple beams to get a more complete picture of the seafloor with depths and characteristics.  After the data is pinpointed to a specific location, variability associated with tides is also taken into account by transforming the data vertically to the mean lowest low tide. Bathymetry data taken on NOAA Ship Fairweather as well as its four survey launches appears as strips on a map, as the ship or boat moves. 


Data is measured to the mean lowest low tide because that level of water is on average the lowest of any tide for a given area.  Using the lowest depth in navigation is conservative, thus allowing vessels to navigate safely through mapped waters. 

photo of two adjacent computer monitors with different views of the collected survey data imposed on charts or maps

Survey Data shown as green strips.

a small boat (a survey launch) mounted on the port side of NOAA Ship Fairweather, as seen from the deck in front of another mounted launch (only partially visible). Beyond the side of the ship, the still water of a bay extends toward the steep green hill that lines the far side. Another launch, already deployed, is visible on the water at a distance.

Survey launches being stored on NOAA Ship Fairweather as well as one deployed in the harbor

Elli stands on the deck of a small boat. She's wearing a life vest and her Teacher at Sea hat. We have a partial view of the launch's wheelhouse to her left and an electronic winch to the right. Behind Elli the waters are calm, and we can see mountains in the distance.

TAS Elli Simonen aboard one of the survey launches.

Calibrating the Data

During our time in port we took out some of the survey launches to perform a patch test; that is, calibration procedures to ensure the data we collect is as accurate as possible.  A correctly calibrated system will show the same mapping of the seafloor in repeated tests, without the influence of confounding variables – speed, direction and ship motion. In a patch test, time delay, pitch, roll and heading are calculated multiple times over different depths, obstructions and slopes on the seafloor and compared to known data.  The obstruction we surveyed was a shipwreck.

view of two computer monitors, two keyboards, and two computer mice on a desk

Planning the Patch Test

photo of a computer screen; it is difficult to see what is being displayed, but Elli has circled one area and added the label "shipwreck"

Map of the planned surveys for the Patch Test.

photo of a computer screen displaying bathymetric data. much of the area appears flat (colored teal blue) but there is a small, raised, orange portion in the shape of a ship lying on its side

Survey Data showing the Wreck

To correct for how the speed of sound changes in ocean water, during surveying every four hours Conductivity, Temperature and Depth (CTD) is measured.  The CTD measures Salinity and Pressure of the Water Column, aspects that can change the speed of sound.  The CTD is used to further calibrate data because different depths have different levels of salinity and temperature, and therefore distort how fast the sound travels. CTD data is used in post-processing to correct for any distortions.

a conductivity, temperature, an depth probe stored in front of a computer tower inside the survey launch's wheelhouse. the probe looks like a white cylinder strapped inside a metal frame that tapers at the top

CTD on the survey launches.

three crewmembers, wearing orange life vests and white hard hats, stand around a piece of equipment mounted at the corner of the aft deck of NOAA Ship Fairweather. a computer is mounted in a blue frame; above extends a blue boom and pulley. a coil of rope hangs on the side. Beyond the ship, the waters are gray with some caps, distant mountain ranges appear in shades of dark blue, and a cloudy, gray-white sky tops the picture.

Moving Vessel Profiler (MVP), a type of CTD that can be used while the ship is in motion, being deployed on NOAA Ship Fairweather by members of the surveying team.

Where does the data go?

Once the survey technicians gather bathymetry data, they still need to edit it before passing it along to National Centers for Environmental Information (NCEI), who package it for public view and is the data repository for environmental data in the U.S. and the U.S. Office of Coast Survey who create navigational charts. Editing the data involves rejecting spurious noise that MBES picked up that is out of range or incorrect.  This data then is transformed into charts and more standardized bathymetry data.

two people look at a computer screen in the computer lab. The survey tech, seated at the computer station, points toward multicolored swaths against a black background on the right monitor. Elli stands be hind him to view over his shoulder. On the desk are messy folders and papers, a small potted plant, and an action figure.

Survey Technician showing TAS Elli Simonen the process of cleaning survey data

Personal Log

Members of the survey team are all smart, respectful and patient and take the time to explain to me the science at play no matter how many questions I have.  I spend the majority of my day with the survey team but also explore other areas of the ship.  I have now been onboard for over a week and things are beginning to feel routine.  The sun does not set here until about 10:30pm and rises around 6am.  Meals are served at regular times and more importantly, at least to me, coffee is available 24/7.

a view of Elli's stateroom. To the left is a metal warddrobe and a metal sink. To the right is a filing cabinet, a simple bed, and the edge of a metal chest of drawers. There's an open porthole along the back wall, and light shines through it onto the wall, forming a bright circle above the bed.

This is TAS Elli’s room aboard NOAA Ship Fairweather at 9:45pm

view through a sea-sprayed porthole of water and mountains. the sun is low in the sky.

View out my window in the Gulf of Alaska.

Did you know?

screenshot of a political map of the continents of the world, with North America at the center. Neon green lines color the North American coastline and extend in webs throughout the rest of the ocean. the map is titled "Data Centre for Digital Bathymetry Viewer."

This map shows, in green, the areas of the world that have bathymetry data, from NCEI, https://www.ncei.noaa.gov/maps/iho_dcdb/

Animals Seen

an otter floats on its back in the water.

Otter swimming near NOAA Ship Fairweather

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Lisa Carlson: Where Did You Come From, Where Did You Go? July 13, 2023

NOAA Teacher at Sea

Lisa Carlson

NOAA Ship Bell M. Shimada

July 5, 2023 – July 19, 2023

Mission: Fisheries: Pacific Hake Survey (More info here)

Geographic Region: Pacific Ocean, off the coast of California

Date: July 13, 2023

– – ⚓ – –

Weather Data from the bridge:

July 11 (1200 PT, 1500 EST)
Location: 37° 46.7’ N, 123° 26.6’ W
43nm (50mi) West of San Francisco, CA

Visibility: 2 nautical miles
Sky condition: Overcast, fog
Wind: 20 knots from N 250°
Barometer: 1015.2 mbar
Sea wave height: 2-3 feet
Swell: 6-7 ft from NW 320°
Sea temperature: 12.2°C (57.2°F)
Air temperature: 12.7°C (57.9°F)
Course Over Ground: (COG): 270°
Speed Over Ground (SOG): 10 knots

July 12 (1200 PT, 1500 EST)
Location: 38° 06.8’ N, 123° 01.6’ W
7nm (8mi) North of Point Reyes Lighthouse, Inverness, CA

Visibility: 2 nautical miles
Sky condition: Overcast, fog
Wind: 12 knots from N 350°
Barometer: 1016.0 mbar
Sea wave height: 1-2 feet
Swell: 3-4 ft from W 280°
Sea temperature: 11.0°C (57.2°F)
Air temperature: 11.5°C (57.9°F)
Course Over Ground: (COG): 270°
Speed Over Ground (SOG): 10 knots

July 13 (1200 PT, 1500 EST)
Location: 38° 17.3’ N, 123° 06.1’ W
2.5nm (4mi) Southwest of Bodega Bay, CA

Visibility: 3 nautical miles
Sky condition: Few clouds, fog
Wind: 13 knots from NW 300°
Barometer: 1015.9 mbar
Sea wave height: 1-2 feet 1-2
Swell: 3-4 ft from NW 300°
Sea temperature: 10.7°C (51.3°F)
Air temperature: 13.7°C (56.6°F)
Course Over Ground: (COG): 340°
Speed Over Ground (SOG): 10 knots

– – ⚓ – –

In my July 6 post, I explained how NOAA Ship Bell M. Shimada is equipped to collect acoustic data in the form of echo grams and therefore find fish to trawl for. In my July 10 post, I explained how we get the fish onboard, and what we do with the sample once it is collected from the net. These entries described what work is done in the Acoustics Lab and the Wet Lab, but there is one more Lab onboard to explore and explain: the Chemistry Lab.

view down the starboard side of NOAA Ship Bell M Shimada shows a wooden nameplate (reading Bell M Shimada) on a railing, the fast rescue boat mounted aftward, and the Golden Gate Bridge in the background.
NOAA Ship Bell M. Shimada leaving Pier 30/32 in San Francisco, CA on July 5, 2023. (Just a nice photo taken by me that I wanted to include)

Science and Technology Log

Each morning after breakfast, we usually gather in the Acoustics Lab, determine what transect we are on, if we are inshore or offshore, and in some ways: hurry up and wait. Once certain patterns and blips show up on the echo grams, the Acoustics team talks with the bridge and may request to turn around and attempt a trawl. After all marine mammal observations are completed, the net is retrieved, and the samples are brought to the Wet Lab, we sort and collect data on the samples. These operations usually take place between 0800 and 2000. (8am to 8pm)

So what happens at night? In the Chemistry Lab, scientists work with the Deck and Surveys Departments to deploy a collection of electronic instruments and 12 Niskin bottles (open bottles used to collect and hold water samples, about one meter long) secured to a cylindrical frame called a rosette. It is deployed from the side sampling station instead of the stern. Scientists onboard NOAA Ship Bell M. Shimada use the instruments and collection of water samples in two ways: measuring Conductivity, Temperature, and Depth (CTD) within a water column to study oceanography, and collecting environmental DNA (eDNA).

photo of a large piece of sampling equipment on deck. a large white metal cylindrical frame houses a ring of perhaps ten tall gray canisters - the Niskin bottles. The bottles circle the conductivity, temperature, and depth probe, which is barely visible. Behind the frame, past the ship's rail, we see vivid blue water with a few white caps and a coastal mountain range beyond.

CTD Niskin bottles arranged on a circular rosette frame.

“Nighttime operations primarily consists of deploying the Conductivity-Temperature [-Depth] (CTD) rosette which gathers oceanographic data such as conductivity, temperature, dissolved oxygen, and chlorophyll fluorescence. The CTD can also be triggered to collect water at specific depths.”

NOAA Fisheries: “eDNA Part 2: There’s a Lot of Water in the Sea – and the Chemistry Lab”
NOAA Ocean Exploration: “What does “CTD” stand for?”

Conductivity, Temperature and Depth: CTD

CTD stands for conductivity (ability to pass an electrical current), temperature, and depth. Scientists use the rosette frame, which is attached to the ship by cables, and has the CTD and 12 Niskin bottles attached, to collect electronic data and multiple water samples.

“A CTD device’s primary function is to detect how the conductivity and temperature of the water column changes relative to depth. Conductivity is a measure of how well a solution conducts electricity and it is directly related to salinity. By measuring the conductivity of seawater, the salinity can be derived from the temperature and pressure of the same water. The depth is then derived from the pressure measurement by calculating the density of water from the temperature and the salinity.”

NOAA Ocean Exploration: “What does “CTD” stand for?”
Elysha, wearing an orange life vest and white NOAA logo hard hat, sits at a metal desk with two computer monitors and a keyboard. The monitors display data from the CTD. Elysha has her right hand on a computer mouse while her left grips a pen over a yellow legal pad. She is turning to smile at the camera.
Senior Survey Technician Elysha Agne gives commands to the Deck Department running the winch and cable to the rosette, and ensures quality data is being collected at each sampling depth.

“For more detailed analyses back in the lab, each of the large gray bottles captures a water sample at a different depth. The data provide scientists important information about the local aquatic environment.”

NOAA: “Photo story: Virtually cruise aboard a NOAA ship for a fish trawl survey”

Depending on the depth at which the vessel is currently operating, the rosette will descend to one to five predetermined depths (50m-500m) for sampling. For example, if the vessel depth reads 400m, water samples will occur at 50m, 150m, 200m, and 300m (more information in Table 1 below). A water sample is also taken just below the ocean surface using a through hull fitting, which allows seawater to be collected via a hole in the hull that feeds directly to the Chem Lab.

Table 1. Sample depths for eDNA. Two independent samples should be taken at each depth. The total ocean depth of location for the CTD cast determines the depths at which water samples will be collected. The rows of the table are labeled Sampling Depth (m) and the columns are labeled Topography depth of CTD cast.
Table 1 in Protocol manual, written by Chem Lab member and eDNA scientist Abi Wells.

While the rosette descends, data is recorded from multiple sensors and are later used by scientists to compare with Acoustic and Wet Lab data and compile and categorize new information from the survey. Pressure, depth, temperature, conductivity, salinity, oxygen, fluorescence, and turbidity were all being recorded during this leg of the survey mission.

photo of a computer screen displaying data. two graphs depict depth (m) on the y-axis and salinity or dissolved oxygen on the x-axes.
Program displaying data collected from the CTD rosette in real time.

Environmental DNA: eDNA

During the day, Hake stay in deeper waters, averaging around 200-350m, but at night the nocturnal feeders start their daily migration through the water column to shallower depths. They feed primarily on zooplankton, shrimp, myctophids (Lanternfish), and even young Hake at this depth. As Hake move throughout the water column, they leave behind DNA in the water that can be collected later as sort of a signature of their presence in that location. The collection, filtering, and preservation of sampled water in the ocean environment is categorized as collecting eDNA. This environmental DNA can be in the form of gametes (reproductive cells), fish scales, feces, etc.

Collecting water samples at different depths in the same vertical column can show what marine life was present at that location, and what depth they were at. I relate it to reviewing school security cameras or talking to other teachers at the end of the school day, to determine where a student was at a certain time and why.

The apparatus housing the CTD probe and Niskin rosette sits on deck. Abi, wearing a yellow hard hat, orange life vest, blue gloves and brown rubber boots, stands between the equipment and the rail of the ship to empty water from a Niskin bottle into a plastic bag. The profile of her face is mostly obscured by her long yellow ponytail.
Chem Lab member and eDNA scientist Abi Wells collecting a 2.5L water sample from a Niskin bottle after a successful CTD deployment.

When the rosette is back on deck, scientists use gloves and new collection bags called Whirlpacks, to collect approximately 2.5L of water from each 10L Niskin bottle. This process is conducted with a great emphasis on sterility, including wiping the bottle spigot with DNAway to remove any contaminants, using new materials, and not allowing fingers or the spigot to touch the collection bag.

White paper is taped down on a bench in the wet lab. On it are rows of water filtering cups mounted on gray horizontal pipes attached to hoses. Each filter cup is topped with a paper filter. Two have funnels attached; additional funnels, still sealed, line the workbench behind the filtering cups.
Sterile work site being set up to pour water samples into the cups and strain through the filters.
blue gloved hands pour water from a clear plastic bag into a funnel attached to a filtering cup. nearby, three plastic pitchers serve as holders for open plastic bags will filled with water.
Chem Lab member and eDNA scientist Abi Wells pouring a 2.5L water sample into the corresponding cup to strain through the filter.

Once the collection bags are filled and brought to the Chem Lab, filtration occurs using 1.0 micron filters. Although this size of filter, compared to smaller filters, allows some cells to pass through and not be collected, it is faster and results in less breakage of cells and loss of DNA. After 2.5L of the water sample is poured through individual filters for each depth sample, they are placed in pre-labeled (location and depth information) tubes with 2mL of preservative buffer. The tubes are stored at room temperature and away from UV light until NOAA Ship Bell M. Shimada is back in port and the samples can be further researched in on-land laboratories. Results from additional studies help to compile lists of marine life that was present in the water column and can be compared to acoustic data and species caught and logged in the Wet Lab.

– – ⚓ – –

Personal Log

So, there you have it. Three Labs onboard that conduct very different research, but fit together in the puzzle of Hake development, migration, diet, niches, ecosystem, biomass, and supporting sustainable commercial fisheries. Each additional piece of data; whether it be echo sounds, physical samples, eDNA, or CTD information, strengthens the others and helps to create a cohesive summary of the data. 

This was a lot to learn in the first few days, but as I’ve said before, all of the crew has been welcoming, supportive, and educational. Having a strong team that works together is priceless, and thoroughly noticed and appreciated. 

A few days into the mission my Mom asked me what the best part of my day was. I had three answers and haven’t had a day yet with only one answer. I replied that it was the great salmon dinner, clean clothes, and seeing Risso’s Dolphins for the first time.

Video taken by me of Risso’s Dolphins surfacing for air. (Plays on loop)

We are now a little more than halfway through the mission and it has truly flown by. We’ve shared riddles and daily Final Jeopardy questions. We’ve laughed over daily experiences and the faces Hake fish make. We’ve played music and watched baseball during dinner. We enjoy watching marine life and breathe in the salt air while strengthening our sea legs. Sometimes we just drink coffee and snack and enjoy this opportunity with each other, and that makes every part of the day the best part.

– – ⚓ – –

Did You Know?

Although Hake are occasionally cannibalistic, they are not at the top of their food chain. Humboldt Squid (Remember those 15 foot long tentacles in my Wet Lab post?), Dogfish Sharks, and marine mammals are all predators, as well as commercial fishing.
Today well over 100 Spiny Dogfish Sharks were inadvertently caught in the trawl, in the same location as the baskets of Hake we sampled from.
Maybe there were baby Hake fish in the sharks’ stomachs… we didn’t attempt to find out.

a white plastic basket of small sharks
Basket one of Spiny Dogfish
a white plastic basket of small sharks
Basket two of Spiny Dogfish

– – ⚓ – –

New Terms/Phrases

Although I had learned the terms a few days earlier, I got to help Wet Lab Lead Ethan Beyer collect otolith and stomach samples for the first time from a sub-sample of Hake the other day.

I watched and learned, then helped scan barcodes of otolith sample bottles, add 95% ethanol that is diluted 50/50 with water, and delicately pick up the ear bones with tweezers and place them in the bottle.

Additionally, each Hake in the sub-sample has its weight recorded, along with length, sex, and developmental stage. From that sub-sample, five stomachs are removed for later analysis, and five have their stomachs opened and their diet is recorded. We often find Lanternfish (Myctophids), Krill (Euphausiidae) and small Hake.

Two orange-gloved hands reach toward a fish on an electronic scale. the ichthystick measuring board is on the table in front of the scale. To the right, in the foreground of the photo, is a large styrofoam case holding small glass sample bottles upright. about two thirds are capped with black caps, while the rest are empty.
Wet Lab Lead Ethan Beyer weighing a Hake sample. Otolith tubes are in the foreground, those with lids have samples inside them and have been scanned into the database with other measurements and samples data from the Hake.
Posted on

Julie Hayes: Days at Sea! April 26, 2023

NOAA Teacher at Sea

Julie Hayes

Aboard NOAA Ship Pisces

April 22-May 5, 2023

Mission: SEAMAP Reef Fish

Geographic Area of Cruise: Gulf of Mexico

Date: April 26, 2023

Weather Data

Clouds: Scattered

Temperature: 77 degrees F

Wind: 12 kt.

Waves: 2-4 ft.

Science and Technology Log

Each day is started and then ended with a water sample from the ocean. The technology is called a CTD, but the procedure would be called a CTD cast (as if we were casting it in the ocean). CTD stands for conductivity, temperature, and depth. The CTD consists of a collection of electronic instruments that measure the properties of the water, including a laser that checks the clarity of the water. Sampling water bottles are connected to a metal frame called a “rosette”. This information on water characteristics is important to both the scientists and the survey mapping team that use cameras and sonar. This information lets them know how well the clarity of the water is and the speed of sound that helps with the depth finders and sonar.

The apparatus containing the conductivity, temperature, and depth probe sits on the deck of NOAA Ship Pisces, awaiting deployment.
CTD used to check water quality, conductivity, temperature, and depth.

Vocabulary Check

What is Conductivity?

Conductivity is a measure of the ability of water to pass an electrical current.

What is Salinity?

Salinity is the dissolved salt content of a body of water and is a strong conductor of water.

So why is it important for scientist to know what each of these are?

The higher salinity the water is, the higher the conductivity of electrical currents.

Temperature also plays a role in the density. Knowing each of these is important because it lets the scientists know the water quality at different depths so they can make adjustments to their cameras and sonar.

Jack Prior, Chief Scientist

Jack is a pretty “chill” guy, and I have enjoyed watching him in action the past few days. Jack is the field party chief of this mission which involves everything from planning the trip, to deciding the daily sampling locations, deploying cameras, mapping, and figuring out what to do when things go wrong. Jack is in charge of planning and submitting the protocol for the entire mission and also is responsible for the end reports of the mission. You will find Jack on this leg sitting behind multiple computers regulating and keeping a watchful eye on all of the important information regarding this mission. Jack attended the University of West Florida to get his degree in marine biology.

Jack sits at a computer desk with multiple monitors. He smiles at the camera, his right hand giving a thumbs up.
Chief Scientist Jack Prior

Student Question of the Day

Whenever I get a chance, I ask random crew members questions that my students back home were curious about. Here is how Jack answered some of the students’ questions.

Konnor, Nichole, Lillian ask: What degree do you have and what all is needed to do your job?

Jack started his major in biology and had originally planned on going on to be a pharmacist, but then moved to Florida where he ended up getting his degree in marine biology instead. Jack continued to also get his Masters at the University of West Florida, too. Jack changed his career path because he enjoyed marine life. Volunteer work is crucial to get experience, and can benefit you on becoming more diverse when it comes to getting a job in marine biology.

Alyson asks: What would be your dream job?

Someday Jack wants to explore the seafloor in a submarine.

Blake, Sailor, Lilli, Jenna ask: What is your favorite food on the ship?

Taco Tuesdays seem to be a huge hit on the ship, as well as Friday pizza day.

Auburn, Ashton M., Karson, Liam: What would you consider to be the coolest marine life you have seen?

Seeing large diverse reef habitats is what Jack says he finds the most interesting, especially uncommon invertebrates that you’d never see on the beach.

Jaxon and Dwight: Can you be on the ship if you have health issues and what happens if there is a medical emergency?

The ship is a pretty confined space with steep stairs, uneven footing, areas you have to be able to step over, and have the ability to carry heavy weight. If there is ever a medical emergency, the ship works alongside the United States Coast Guard to get them the help they need. However, the ship is great working with all issues and plans accordingly to those who may have special diet restrictions.

Personal Log

Well, I will say that I am getting better at having my sea legs but that is still a work in progress. I have really enjoyed getting to understand the life on this ship, and I am just amazed at how diverse everyone is and yet still make this an amazing environment. It has taken me a few days to get the hang of where things are and to get out of my comfort zone to ask what I feel like has to be a million questions about everything. I have really enjoyed getting to hear and learn about the crew’s background and how they ended up on NOAA Ship Pisces. I greatly appreciate their willingness to answer my questions, even though I am sure I am in their way at moments. Everyone has a job to do and work different hours and shifts. It is great to see how they all respect each other’s space and sleeping hours.

There is so much science around me that I never knew existed, and I am shocked on how much technology is actually being used and heavily relied upon. Today was the first day the waves were calm enough that I was able to go out on the stern (learning names of different areas of the ship) to work on the blog and soak up a little bit of Sun. It was nice to be able to get some fresh air. The food has been amazing on the ship. I love how everyone is so courteous by thanking the cooks, as well as cleaning up after themselves before leaving the mess. The mess is the area in which we eat and the kitchen is called the galley. It has taken me a few days to understand the boat “lingo” but I am starting to catch on. The stairs are pretty steep, and everyone on board says to use 3 points of contact when walking. This is so that if they hit a wave while walking you are more stable. I could definitely see this being an issue going up and down the stairs. The doors are super heavy and I am still learning how to get those twisted and sealed tight the first time I close it (I am getting there).

A view of the mess: that is, the ship's the dining area. At the moment, it is unoccupied. There are five long tables, bolted to the floor, covered in blue vinyl or plastic table clothes. Black chairs surround each one. The chair's legs are all capped in cut-open tennis balls. The tables are supplied with condiments and paper towel holders. A large television screen mounted on the wall shows a football game.
The mess where we eat. It is spotless and a great size to fit everyone on board.

A staircase, as seen looking down from the top stair. There are railings and anti-slip applications.
A heavy metal door, with rounded edges, and a steering-wheel shaped handle. The door is stamped "Keep Closed."
Posted on

George Hademenos: A Day in the Life…of a Marine Science Researcher, August 25, 2022

NOAA Teacher at Sea

George Hademenos

Aboard R/V Tommy Munro

July 19 – 27, 2022

Mission: Gulf of Mexico Summer Groundfish Survey

Geographic Area of Cruise: Eastern Gulf of Mexico

Date: August 25, 2022

In this post, I would like to walk you through my interactions and observations with the science research being conducted aboard the R/V Tommy Munro, in particular, the steps that were taken during a trawling process. The entire process involved three stages: Preparing for Sampling, Conducting the Sampling, and Analyzing the Sampling with each stage consisting of six distinct steps.

View the following steps in an interactive tour here: Trawl Sampling Process (Genially)

I. Preparing for Sampling

Step 1: The ship travels to designated coordinates for sampling sites as determined for the particular leg of the Survey by SEAMAP (Southeast Area Monitoring and Assessment Program).

screenshot of a computer screen showing the path that R/V Tommy Munro traveled among sampling sites. The ship's path is a bold blue line connecting sample sites marked in yellow. It's superimposed on an electronic nautical chart. This survey occurred southeast of Florida's Apalachicola Bay and St. George Island.
Ship Transport to Sampling Site

Step 2: Once the ship reaches the site, a Secchi disk is attached to a cable and lowered into the water off the side of the ship to determine visibility. When the disk can no longer be seen, the depth is recorded and the disk is raised and secured on ship. 

a scientist wearing a life vest stands on a small grated platform that has folded down off the fantail of R/V Tommy Munro. With his left land, he grasps a cable hanging from an A-Frame that extends out of the photo. The cable is attached to a white disk, about the size of an old record, with a weight underneath.
Deployment of Secchi Disk

Step 3: A CTD (Conductivity, Temperature, and Depth) unit is then prepared for deployment. It is a rectangular chamber with sensors designed to measure physical properties of the water below including dissolved oxygen, conductivity, transmissivity, and depth. 

a conductivity, temperature, and depth probe, mounted inside a rectangular metal cage about 1 foot square and about 3 feet high, sits on deck. a crew member wearing white shrimp boots hooks a cable onto the top of the CTD frame. Another person, mostly out of frame, touches the CTD frame with their right hand, covered in a blue latex glove.
Preparation of CTD Unit

Step 4: The CTD unit is powered on and first is submerged just below the surface of the water and left there for three minutes for sensors to calibrate. It is then lowered to a specified depth which is 2 meters above the floor of the body of water to protect the sensors from damage. 

the CTD unit, attached to a cable, sinks into dark blue water.
Deployment of CTD Unit

Step 5: Once the CTD unit has reached the designated depth, it remains there only for seconds until it is raised up and secured on board the ship.  

a science team member, wearing a blue hat, a blue life vest, and blue latext gloves, stands on the deployment platform out the back of R/V Tommy Munro. He grasps the top of the CTD frame as a cable lifts it back out of the water.
Recovery of CTD Unit

Step 6: The CTD unit is then turned off and the unit is connected through a cable to a computer in the dry lab for data upload. Once the data upload is completed, the CTD unit is flushed with deionized water using a syringe and plastic tubing and then secured on the side of the ship.   

the CTD unit sits on deck, now connected to a computer via a cable to upload the data it collected.
Data Upload from CTD Unit

II. Conducting the Sampling

Step 1: The trawling process now begins with the trawl nets thrown off the back of the ship. The nets are connected to two planks, each weighing about 350 lbs, which not only submerges the nets but also provide an angled resistance which keeps the nets open in the form of a cone – optimal for sampling while the ship is in motion.

a view of the fantail of R/V Tommy Munro, from an upper deck. we are looking through the rigging of the trawl frames. two large planks rest on the lower deck, connected to ropes and lines. the trawl net, connected to the planks, extends out the back of the fantail. It is just visible below the surface, a turquoise-colored cone submerged in a blue sea.
Preparation of the Trawling Process Part 1
another view of the fantail of R/V Tommy Munro from an upper deck, through extensive rigging and frames. the trawl net is further extended; now the large planks are lowering off the back deck as well, suspended by lines connected to a pulley in an A-frame. it is a clear day and the water is very smooth.
Preparation of the Trawling Process Part 2

Step 2: Once the trawl nets have been released into the water from the ship, the ship starts up and continues on its path for 30 minutes as the nets are trapping marine life it encounters.

a view of the fantail of R/V Tommy Munro from an upper deck. the trawl net is fully deployed and no longer visible. a crew member sweeps the deck.
Onset of the Trawling Process

Step 3: After 30 minutes has transpired, a siren sounds and the ship comes to a stop. The two weighted planks are pulled upon the ship followed by the trawl nets.

a view of the A-frame at the fantail R/V Tommy Munro as the trawl net rises from the ocean. The two spreader panels are suspended from separate lines running through the central pulley. behind those, the top of the trawl net is visible above the water. a crew member guides the spreader doors with his left hand, holding the lines with his right hand.
Conclusion of the Trawling Process Part 1
the spreader doors are now resting on the fantail deck again. two crewmembers, wearing life jackets, pull the trawl net back on board.
Conclusion of the Trawling Process Part 2

Step 4: The trawl nets are raised and hoisted above buckets for all specimens to be collected. Then begins the process of separation. In the first separation, the marine life is separated from seaweed, kelp and other debris. The buckets with marine life and debris are then weighed and recorded.

a crewmember (only partially visible) empties the contents of the trawl net into a blue plastic basket. it looks like it's mostly sargassum.
Content Collection from the Trawl Part 1
four plastic baskets on deck hold the sorted contents of the trawl. one has larger fish; another contains only a single fish; a third is a jumble of seaweed and sargassum, and may represent the remainder to sort; the contents of the fourth are not visible. a crewmember wearing a life vest and gloves leans over the baskets. another crewmember, only partially visible, looks on.
Content Collection from the Trawl Part 2

Step 5: The bucket(s) with marine life are emptied upon a large table on the ship’s stern for separation according to species.

a pile of fish on a large metal sorting table. we can see snappers, a trigger fish, and many lionfish. a stack of white sorting baskets rests adjacent to the pile.
Separation Based on Species Part 1
a gloved hand reaches toward the pile of fish on the metal sorting table. (this photo was taken from the same vantage point as the previous one.)
Separation Based on Species Part 2

Step 6: Each species of marine life is placed in their own tray for identification, examination, and measurements inside the wet lab. 

two gloved crewmembers sort fish into smaller white baskets on a large metal sorting table. the table is on the back deck of the ship, and we can see smooth ocean conditions in the background. the crewmember in the foreground considers a small fish he has picked up from the remaining unsorted pile. the other crewmember looks on.
Species Sorted in Trays Part 1
a close-up view of the sorting basket containing only lionfish.
Species Sorted in Trays Part 2

III. Analyzing the Sampling

Step 1: After all species were grouped in their trays, all trays were taken into the wet lab for analysis. Each species was positively identified, counted, and recorded.  

a direct view of three fish of different species, lined up on the metal sorting table. the third is a spotfin butterflyfish.
Tray Transport to Wet Lab

Step 2: Once each species was identified and counted, the total number of species was weighed while in the tray (accounting for the mass of the tray) and recorded on a spreadsheet to a connected computer display system.   

a view of a scale.
Total Weight Measurements

Step 3: For each species, the length of each specimen was recorded using a magnetic wand with a sensor that facilitated the electronic recording of the value into a spreadsheet.   

two hands, wearing latex gloves, measure a small lionfish on the electronic measuring board. the scientist holds the fish against the board with his left hand and with his right hand marks the length with the magnetic stylus.
Individual Length Measurements

Step 4: Weights of the collected species were recorded for the first sample and every fifth one that followed.   

the gloved arm places the small lionfish on the scale behind the fish measuring board.
Individual Weight Measurements

Step 5: If time permitted between samplings, the sex of selected specimens for a species was determined and recorded.   

gloved hands cut into a small lionfish to remove the fish's gonads.
Individual Species Sex Identification

Step 6:Once the entire sampling was analyzed, selected samples of specimens were placed in a baggie and stored in a freezer for further analysis with the remaining specimens returned to a larger bucket and thrown overboard into the waters. The separation table was cleaned with a hose and buckets were piled in preparation for the next sampling. 

view out the fantail of R/V Tommy Munro from the lower deck. the trawl net and spreader doors lay on the deck, not currently in use. the sun shines on calm seas.
Finalize Process and Prepare for Next

In this installment of my exercise of the Ocean Literacy Framework, I would like to ask you

to respond to three questions about the fifth essential principle (The ocean supports a great diversity of life and ecosystems.), presented in a Padlet accessed by the following link:

https://tinyurl.com/427xp9p3

Remember, there are no right or wrong answers – the questions serve not as an opportunity to answer yes or no, or to get answers right or wrong; rather, these questions serve as an opportunity not only to assess what you know or think about the scope of the principle but also to learn, explore, and investigate the demonstrated principle. If you have any questions or would like to discuss further, please indicate so in the blog and I would be glad to answer your questions and initiate a discussion.

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Michael Gutiérrez Santiago: Línea Hidrográfica de Newport, 18 de agosto de 2022

Read this post in English: Michael Gutiérrez Santiago: Newport Hydrographic Line, August 18, 2022


NOAA Teacher at Sea

Michael Gutiérrez Santiago

 NOAA Ship Bell M. Shimada

12 de agosto – 25 de agosto de 2022


Misión: Estudio de poblaciones de merluza del Pacífico

Área Geográfica de Crucero: Costa de Washington y Oregón

Fecha: 18 de agosto de 2022


Condiciones atmósfericas desde el puente :

Latitud: 4539.9725N
Longitud: 12422.9606W
Temperatura: 63°F 
Velocidad del viento: 13 mph
Barometero:  1017.2mb

Michael posa para una foto para mostrar su equipo: Grundens naranja (mono de goma) sobre una sudadera negra, un chaleco salvavidas naranja, un casco amarillo y anteojos de sol.
Preparado para recolectar muestras de plancton!

Registro de Ciencia y Tecnología

Línea Hidrográfica de Newport

La línea hidrográfica de newport es un estudio de investigación oceanográfica realizado por científicos del Centro de Ciencias Pesqueras del Noroeste de NOAA y de la Universidad Estatal de Oregón en las aguas costeras de Newport, Oregón .

Los investigadores han recopilado métricas oceanográficas físicas, químicas y biológicas a lo largo de Newport Line cada dos semanas durante más de 20 años. Este conjunto de datos de más de veinte años nos ayuda a comprender las conexiones entre los cambios en el clima oceánico y la estructura y función del ecosistema en la corriente de California1,2,3.

Los datos de Newport Line se destilan en  indicadores de ecosistemas oceánicos , que se utilizan para caracterizar el hábitat y la supervivencia de los salmónidos juveniles, y que también se han mostrado prometedores para otras poblaciones como el bacalao negro, el róbalo y la sardina4. Estos datos también brindan información crítica del ecosistema sobre problemas emergentes, como las olas de calor marinas3, la acidificación de los océanos, la hipoxia6 y la proliferación de algas nocivas7.

un mapa de la costa de Washington y Oregón. la tierra está sombreada en gris, mientras que el agua es blanca con algunas líneas azules que indican la topografía submarina. Aunque no hay líneas de cuadrícula, las etiquetas marcan las líneas de latitud desde 43 grados norte hasta 47 grados norte y las líneas de longitud desde 125 grados oeste hasta 123 grados oeste. A mitad de camino, entre 44 y 45 grados norte, una línea roja corta se extiende horizontalmente desde Newport hasta el meridiano 125. Está etiquetado como "Línea NH".
Newport line

Barómetro de la acidificación e hipoxia de los océanos en un clima cambiante

Los modelos climáticos globales sugieren que los cambios futuros en el afloramiento costero conducirán a una mayor incidencia de hipoxia y exacerbarán aún más los efectos de la acidificación de los océanos. La serie temporal de Newport Line proporciona una línea base de parámetros biogeoquímicos, como el estado de saturación de aragonito, un indicador de condiciones ácidas (Fig. 4). Los investigadores pueden comparar esta línea de base con posibles cambios futuros en la abundancia de organismos (p. ej., pterópodos, copépodos y krill) sensibles a la acidificación del océano y la hipoxia.

Equipo utilizado

  • a net, which includes long mesh tubing extending from a ring, hangs in the air from a point above the photo's frame. a crewmember, wearing hard hat and life jacket, grips the ring with his left hand and reaches toward a rope attached to the net with his right hand. three other crewmembers are visible around the net.
    Red vertical
  • a net, which includes long mesh tubing extending from a ring, hangs in the air from a point above the photo's frame. a crewmember, wearing hard hat and life jacket, facing away from the camera, reaches over the rail of the ship to lower the end of the suspended net into the water.
    Colocando la red vertical en el agua
  • an illustration of a research vessel with a vertical net deployed off its side. the net looks like a white cone, pointing downward, ending in a red cannister.
    red vertical desplegada verticalmente en el agua desde un buque de investigación

Una red vertical es una red de anillos con un ancho de malla pequeño y una forma de embudo largo. Al final, la red se cierra con un cilindro (copo) que recoge el plancton. Se despliega verticalmente en el agua desde un buque de investigación. Se utiliza principalmente para investigar la estratificación vertical/diagonal del plancton. Esto permite determinar la abundancia y distribución del mesozooplancton.

  • a cable lowers a bongo net onto the ship's deck. the bongo net, name for bongo drums, is actually a pair of nets: two rings side by side hold up the nets made of long mesh tubing that narrow until they end in attached cannisters. a crewmember, wearing a hard hat and a life vest, leans to look at something around the back of the net.
    Red de bongó
  • a crewmember, wearing a hard hat and life vest, hoses down the mesh tubing of one side of the bongo net. the top of the net hangs from a cable about 12 feet above the deck so the crewmember can rinse the tubing while standing.
    Lavado de la muestra por la red bongó
  • an illustration of a research vessel with a bongo net deployed off its stern. the net looks like a pair of white cones, pointing horizontally away from the ship, ending in red cannisters.
    Un barco de investigación tira horizontalmente de una red de bongo a través de la columna de agua.

Una red bongó consta de dos redes de plancton montadas una al lado de la otra. Estas redes de plancton son redes de anillos con un ancho de malla pequeño y una forma de embudo largo. Ambas redes están encerradas por un copo que se utiliza para recolectar plancton. Un barco de investigación tira horizontalmente de la red bongo a través de la columna de agua. Usando una red bongo, un científico puede trabajar con dos anchos de malla diferentes simultáneamente.

  • Michael, at left, holds up the net while Toby, right, uses a hose to spray down the mesh tubing at the end. Both Michael and Toby wear rubber pants, rubber boots, life jackets, and hard hats.
    Asistiendo a Toby con la red Isaacs-Kidd
  • three crewmembers, wearing hard hats and life vests, hold different portions of a large fishing net that is attached to cables extending out of frame. One steadies the net spreader, a horizontal metal bar. Another grasps the webbing. We can see a wide piece of metal toward the front that is bent like a wide "V". The belts of the crewmembers' vests are each clipped to brightly covered, stretchy tethers to prevent them from falling overboard.
    Red Isaacs-Kidd
  • a diagram of the shape and dimensions of the Isaacs-Kidd midwater trawl. labels identify the net spreader (horizontal metal bar), depresser (v-shaped metal plate), and bridle (short cables extending from the edges of the net opening, coming to a point). the net opening is 4 feet 8 inches wide by 5 feet 9 inches tall. the main portion of the trawl net extends 20 feet 6 inches long; it attached to a finer mesh net that is 5 feet 8 inches long.
    Dimensiones de la red Isaacs-Kidd

La red de arrastre de media agua Isaacs-Kidd recolecta especímenes biológicos batipelágicos más grandes que los capturados por las redes de plancton estándar. La red de arrastre consiste en una red específicamente diseñada unida a una amplia paleta de buceo rígida en forma de V. La veleta mantiene abierta la boca de la red y ejerce una fuerza de presión, manteniendo la red de arrastre en profundidad durante períodos prolongados a velocidades de remolque de hasta 5 nudos. La abertura de entrada no está obstruida por el cable de remolque.

Muestras recolectadas

una vista de cerca de una mano sosteniendo un frasco transparente con una tapa blanca. Este frasco contiene la muestra recolectada por la red vertical. Dado que esta red se dirige al plancton, la muestra en su mayoría parece agua turbia y amarillenta.
Muestras de red vertical
una vista de primer plano del contenido de un recipiente blanco, tal vez un balde. Este contiene la muestra recolectada de la red bongo. Es una mezcla espesa de plancton, zooplancton, krill y al menos un pez pequeño.
Muestras de red bongó
  • Muestasas de Isaacs-Kidd
  • Kril recolectado de Isaacs-Kidd

Registro personal

¡ATAQUE DE TIBURÓN!

Así es, nuestro uCTD fue atacado por un tiburón.

una vista a través de un aparejo de metal de una polea con un cable que se extiende hasta la superficie del océano. ya no hay nada conectado al cable.
Q.D.P.

En un día brillante y soleado, el equipo científico decidió lanzar el CTD en curso, ¡pero las cosas no salieron según lo planeado! Al recuperar el uCTD de regreso al barco, vimos una gran aleta dorsal zigzagueando cerca del uCTD, hasta que notamos que el uCTD ya no estaba conectado a la línea, por lo que no tuvimos más remedio que cancelar el uCTD. Deberías haber visto todas nuestras caras; no podíamos creer lo que vimos. Creemos que podría haber sido un:

una imagen de un tiburón blanco nadando bajo el agua.
Tiburón Blanco
una imagen de un tiburón salmón nadando bajo el agua.
Tiburón Salmon
vista de una mano que sostiene un perfilador submarino de conductividad, temperatura y profundidad (uCTD). en el fondo hay una pintura en la puerta de un gabinete de un barco blanco navegando a través de las olas y criaturas marinas algo fantásticas nadando debajo.
uCTD
(lo que se comió el tiburón)

CTD significa conductividad (salinidad), temperatura y (Depth) profundidad y permite a los investigadores recopilar perfiles de temperatura y salinidad de la parte superior del océano a velocidades en curso, a profundidades de hasta 500 m. Los exploradores oceánicos a menudo usan mediciones CTD para detectar evidencia de volcanes, respiraderos hidrotermales y otras características de aguas profundas que causan cambios en las propiedades físicas y químicas del agua de mar.

Atardecer en el Océano Pacífico, visto desde la cubierta superior del barco NOAA Bell M. Shimada. El marco de la red de arrastre, los pescantes y otros equipos en la cola de popa son visibles en silueta.
Atardecer a bordo
Posted on

Michael Gutiérrez Santiago: Newport Hydrographic Line, August 18, 2022

Lea esta publicación en español: Michael Gutiérrez Santiago: Línea Hidrográfica de Newport, 18 de agosto de 2022

NOAA Teacher at Sea

Michael Gutiérrez Santiago

 NOAA Ship Bell M. Shimada

August 12 – August 25, 2022


Mission: Pacific Hake Survey

Geographic Area of Cruise: Coasts of Washington and Oregon

Date: August 18, 2022


Weather conditions from the bridge:

Latitude: 4539.9725N
Longitude: 12422.9606W
Temperature: 63°F 
Wind Speed: 13 mph
Barometer:  1017.2mb

Michael poses for a photo to show off his gear: orange Grundens (rubber overalls) over a black sweatshirt, an orange life vest, a yellow hard hat, and sunglasses.
Ready for plankton sampling!

Science and Technology Log

Newport Hydrographic Line

One way scientists assess the health of our ocean’s ecosystems is to take samples of zooplankton and ichthyoplankton (fish eggs and larvae), both on the surface of the water and at depth. Observations of these plankton can inform us greatly about productivity at the bottom of the food chain, spawning location and stock size of adults, dispersal of larval fish and crabs to and away from nursery areas, and transport of ocean currents.

The Newport Hydrographic (Newport Line) is an oceanographic research survey conducted by NOAA’s Northwest Fisheries Science Center and Oregon State University scientists in the coastal waters off Newport, Oregon.

Researchers have collected physical, chemical, and biological oceanographic metrics along the Newport Line every two weeks for over 20 years. This twenty-plus year dataset helps us to understand the connections between changes in ocean-climate and ecosystem structure and function in the California Current.

Data from the Newport Line are distilled into ocean ecosystem indicators, used to characterize the habitat and survival of juvenile salmonids, and which have also shown promise for other stocks such as sablefish, rockfish, and sardine. These data also provide critical ecosystem information on emerging issues such as marine heatwaves, ocean acidification, hypoxia, and harmful algal blooms.

a map of the coast of Washington and Oregon. the land is shaded gray, while the water includes a few blue lines indicating underwater topography. Though there are not grid lines, labels mark the latitude lines from 43 degrees North to 47 degrees North and the longitude lines from 125 degrees West to 123 degrees West. Midway, between 44 and 45 degrees North, a short red line extends horizontally out from Newport to the 125th meridian. It's labeled "NH Line"
Newport line

Barometer of ocean acidification and hypoxia in a changing climate

Global climate models suggest future changes in coastal upwelling will lead to increased incidence of hypoxia and further exacerbate the effects of ocean acidification. The Newport Line time-series provides a baseline of biogeochemical parameters, such as Aragonite saturation state—an indicator of acidic conditions. Researchers can compare this baseline against possible future changes in the abundance of organisms (e.g., pteropods, copepods and krill) sensitive to ocean acidification and hypoxia.

Equipment used

  • a net, which includes long mesh tubing extending from a ring, hangs in the air from a point above the photo's frame. a crewmember, wearing hard hat and life jacket, grips the ring with his left hand and reaches toward a rope attached to the net with his right hand. three other crewmembers are visible around the net.
    Vertical/half meter net
  • a net, which includes long mesh tubing extending from a ring, hangs in the air from a point above the photo's frame. a crewmember, wearing hard hat and life jacket, facing away from the camera, reaches over the rail of the ship to lower the end of the suspended net into the water.
    Getting the vertical net in the water
  • an illustration of a research vessel with a vertical net deployed off its side. the net looks like a white cone, pointing downward, ending in a red cannister.
    Vertical net deployed vertically in the water from a research vessel

A vertical net is a ring net with a small mesh width and a long funnel shape. At the end, the net is closed off with a cylinder (cod-end) that collects the plankton. It is deployed vertically in the water from a research vessel. It is mostly used to investigate the vertical/diagonal stratification of plankton. This allows the abundance and distribution of mesozooplankton to be determined.

  • a cable lowers a bongo net onto the ship's deck. the bongo net, name for bongo drums, is actually a pair of nets: two rings side by side hold up the nets made of long mesh tubing that narrow until they end in attached cannisters. a crewmember, wearing a hard hat and a life vest, leans to look at something around the back of the net.
    Bongo net
  • a crewmember, wearing a hard hat and life vest, hoses down the mesh tubing of one side of the bongo net. the top of the net hangs from a cable about 12 feet above the deck so the crewmember can rinse the tubing while standing.
    Washing the sample down the bongo net
  • an illustration of a research vessel with a bongo net deployed off its stern. the net looks like a pair of white cones, pointing horizontally away from the ship, ending in red cannisters.
    A bongo net is drawn horizontally through the water column by a research vessel

A bongo net consists of two plankton nets mounted next to each other. These plankton nets are ring nets with a small mesh width and a long funnel shape. Both nets are enclosed by a cod-end that is used for collecting plankton. The bongo net is pulled horizontally through the water column by a research vessel. Using a bongo net, a scientist can work with two different mesh widths simultaneously.

  • Michael, at left, holds up the net while Toby, right, uses a hose to spray down the mesh tubing at the end. Both Michael and Toby wear rubber pants, rubber boots, life jackets, and hard hats.
    Assisting Toby with Isaacs-Kidd net
  • three crewmembers, wearing hard hats and life vests, hold different portions of a large fishing net that is attached to cables extending out of frame. One steadies the net spreader, a horizontal metal bar. Another grasps the webbing. We can see a wide piece of metal toward the front that is bent like a wide "V". The belts of the crewmembers' vests are each clipped to brightly covered, stretchy tethers to prevent them from falling overboard.
    Isaacs-Kidd midwater trawl
  • a diagram of the shape and dimensions of the Isaacs-Kidd midwater trawl. labels identify the net spreader (horizontal metal bar), depresser (v-shaped metal plate), and bridle (short cables extending from the edges of the net opening, coming to a point). the net opening is 4 feet 8 inches wide by 5 feet 9 inches tall. the main portion of the trawl net extends 20 feet 6 inches long; it attached to a finer mesh net that is 5 feet 8 inches long.
    Isaacs-Kidd midwater trawl dimension

Isaacs-Kidd midwater trawl collects bathypelagic biological specimens larger than those taken by standard plankton nets. The trawl consists of the specifically designed net attached to a wide, V-shaped, rigid diving vane. The vane keeps the mouth of the net open and exerts a depressing force, maintaining the trawl at depth for extended periods at towing speeds up to 5 knots. The inlet opening is unobstructed by the towing cable.

What we got?

a close-up view of a hand holding a clear jar with a white lid. This jar contains the sample collected by the vertical net. Since this net targets plankton, the sample mostly looks like cloudy, yellowish water.
Samples from vertical net
a close-up view of the contents of a white container, perhaps a bucket. This contains the sample collected from the bongo net. It's a soupy mixture of plankton, zooplankton, krill, and at least one small fish.
Samples from bongo net
  • a close-up (possible magnified) view of a petri dish containing organisms sampled by the Isaacs-Kidd net. mostly crustaceans and larval fish. The petri dish rests on a bright blue background that creates a sharp contrast with the somewhat translucent creatures.
    Isaacs-Kidd sample
  • close-up view of a pile of many, many krill. they look like clear pink tubes with black dots for eyes.
    Krill from the Isaacs-Kidd

Personal Log

SHARK ATTACK!

That’s right, our underway CTD was attacked by a shark.

a view through a metal rigging of a pully with a cable extending down to the ocean's surface. there is no longer anything attached to the cable.
R.I.P.

On a bright and sunny day, the science team decided to launch the underway CTD, but things didn’t go as planned! Retrieving the uCTD back to the ship we saw a big dorsal fin zigzagging close to the uCTD, until we noticed that the uCTD was no longer attached to the line, therefore we had no choice that to cancel the uCTD. You should have seen all of our faces; we couldn’t believe what we saw. We think it could have been a:

a stock image of a white shark swimming underwater.
White shark
a stock image of a salmon shark swimming underwater.
Salmon shark
view of a hand holding an underwater conductivity, temperature, and depth (uCTD) profiler. in the background is a painting on a cabinet door of a white ship sailing through waves and somewhat fantastical deep sea creatures swimming below.
underway CTD
(what the shark ate)

CTD stands for conductivity (salinity), temperature, and depth and it enables researchers to collect temperature and salinity profiles of the upper ocean at underway speeds, to depths of up to 500 m. Ocean explorers often use CTD measurements to detect evidence of volcanoes, hydrothermal vents, and other deep-sea features that cause changes to the physical and chemical properties of seawater.

Sunset on the Pacific Ocean, as seen from an upper deck of NOAA Ship Bell M. Shimada. The trawl net frame, davits, and other equipment on the fantail are visible in silhouette.
Sunset on board
Posted on

Laura Grimm: Most Valuable Player? July 9, 2022

NOAA Teacher at Sea

Laura Grimm

Aboard NOAA Ship Thomas Jefferson

July 4 – July 22, 2022

Mission: Hydrographic Survey of Lake Erie

Geographic Area of Cruise: Lake Erie

Date: July 9, 2022

Weather Data from the Bridge 

Latitude: 42ᵒ 08’3N

Longitude: 080ᵒ 16’2W

Sky Conditions: Few clouds

Wind Speed: 23.0 knots

Wind Direction: 030ᵒ NNE

Lake Temperature: 21.4 ᵒC

Wave Height: 4 -6 feet

Dry Bulb: 19.7 ᵒC

Wet Bulb: 16.6 ᵒC

Calculated Relative Humidity: 74%

Visibility: 10+ miles

screenshot of software displaying a nautical chart and many parallel colored lines
An Electronic Chart Display and Information System (ECDIS) display of our current hydrographic survey progress. ECDIS is a system used for nautical navigation that serves as an alternative to paper nautical charts. The colorful lines indicate where we have used the Multibeam Echo Sensor (MBES) to measure the depth and physical features of the lake bottom.

Science and Technology Log

As explained in a previous blog, hydrographic survey uses sound energy.  NOAA hydrographers use various tools to measure the speed of sound from the time it is sent out to the time it is received as an echo.  Sound waves traveling through water of different density cause refraction (or bending) of the energy wave.  The density of water is affected by the salinity, temperature, and depth of the water. Scientists need to measure these parameters (things) and then use this knowledge to correct the data depending upon the properties of the water the sound is traveling through. (If you have been following this blog, nothing so far is new.) 

Today’s question is how is the temperature and salinity of a column of water measured?  Hydrographers use different types of tools to measure the temperature, salinity, and water depth.  As a group, these tools are called “sound velocity profilers”.  A conductivity, temperature, and depth sensor (CTD) can measure these three things in a column of water and then it calculates the speed of sound in water using a formula called the Chen-Millero equation.  (I do not claim at all to understand this equation!)

To make matters more interesting, there are two (I’m sure there are more than two, however, to simplify things, we will assume that there are only two) types of CTDs.  One type is sent overboard when the ship is not moving.  The other type can be used when the ship is moving.  Using a CTD while the ship is moving is a great thing, because to get good data, CTD data must be taken frequently (every 1-4 hours) and this big ship is difficult to stop!

a digital illustration of an award ribbon reading "MVP"
Most Valuable Player Award

NOAA Ship Thomas Jefferson has both types of CTD sensors.  They rely heavily on the type that can be used when the ship is moving.  In fact, it is so important that we call it our MVP.  This does not stand for Most Valuable Player – although it is extremely important!  A moving vessel profiler (MVP) can be used to measure the water column when the ship is moving at regular survey speeds (8-10 knots).  It kind of looks like a torpedo.  The MVP system can be set up to drop to a given depth determined by the hydrographers in charge of the project – not to shallow & not too deep . . . just right. 

a moving vessel profiler sitting on deck of NOAA Ship Thomas Jefferson. It looks like a small torpedo standing on end. A life preserver ring is mounted on the rail in the background.
Moving Vessel Profiler (MVP) utilized by NOAA field units.
close-up of a label on the moving vessel profiler control station, which reads: AML Oceanographic, www.AMLoceanographic.com, +1 250 656 0771, MVP Moving Vessel Profiler
Here is the information should you want to order a MVP.   :o)
a control panel for the moving vessel profiler: we see buttons, knobs, what looks like a joystick
After the MVP is put in the water, it can deployed and controlled with a computer in the Plot Room.
a crane lowers the moving vessel profiler into the water
The MVP is placed overboard and into the water using a crane.

It can be controlled remotely with a computer without needing someone to be on deck.  Deploying the MVP is called a “cast”.  The benefit of deploying a sound speed profiler like the MVP while the ship is moving is significant.  It is a real time-saver!  Surveyors do not need to stop the ship at regular intervals – this makes their time at sea much more efficient.

Yesterday, I got the opportunity to deploy the MVP.  From the acquisition desk in the plot room, one first needs to get permission from the bridge (the “upstairs office” filled with people driving and navigating the ship), to take a “cast”.  The conversation over the intercom goes something like this:

Laura: “Bridge, this is Survey.”

Bridge: “Go ahead Survey.” 

Laura: “May I please take an MVP cast?”

Bridge: (If the area is clear of small boats and obstructions, they will respond,) “Go ahead Survey.”

Laura: (Once permission is granted, all you need to do is to push the “start” button.  A lot of cable attached to the MVP automatically pays out and it drops to a set depth, a few meters above the bottom.  Once this started to happen, I informed the Bridge by saying,) “Fish is away.” 

Bridge: “Copy.”

Laura: (After reaching the designated depth, the cable drum turns quickly in reverse and hauls the MVP back up to near the surface.  I finished by saying,) “Cast complete”. 

I was a bit nervous talking to the bridge, but I think I did okay.

screenshot of a computer screen with readout from the moving vessel profiler, including a graph showing the depth over time
This is the computer that controls the MVP.  The Hydrographer In Charge (HIC) does this from the acquisition desk in the Plot Room.  The blue line above shows the movement of the MVP and its location in the water column.  It was sent down to 1.5 meters above the floor of the lake.

Meet the Crew

Sydney peers into a compass mounted on a post on deck
Sydney Catoire is using a gyro compass to get a visual reading on a prominent antenna near Erie, PA.

Sydney Catoire is a Lieutenant in the NOAA Corps. (More about the NOAA Corps in a future blog post.) She is an Operations Officer in Training (OPS IT). Sydney comes from a Navy family and grew up on Virginia Beach, VA. Ms. Catoire studied marine biology and mathematics at Old Dominion University in Norfolk, VA. Wanting to combine aspects of the Navy as well as work as a scientist led her to apply to the NOAA Corps. She received her Master of Science in Geospatial Information Sciences (GIS) while working for the Office of Coast Survey.

Why is your work important? The safety of navigation is our primary goal as hydrographers. We use the data to update nautical charts to make it safe to sail. The bathymetric products provided are open source (free for anyone to download and use) and are used for ocean and lake bed mapping. For example, the data can be used for tsunami storm surge modeling, coastal erosion, and habitat mapping. All this data is super critical and is used by a wide variety of scientific organizations and research institutions.

How will your job change once you become an Operations Officer (OPS)? She will still be involved with the day-to-day workings of the hydrographic survey, however, once she becomes an OPS, she will take a leadership role in the survey, assigning sheets (areas to survey), and mentoring sheet managers who develop the line plans (the path that the ship travels to complete the survey). In other words, she will decide on the most efficient methods to “mow the lawn.” She will also help to train junior officers, organize the processing of the data, and work directly with the Office of Coast Survey Hydrographic Division.

What is the thing about your job you like the most? She likes being on the bridge, navigating and driving the ship, as well as looking out the window for marine life – which lately has been very limited since we are sailing on the Great Lakes.

Tell us a few things about yourself outside of being an OPS IT. Sydney and her sister have a dog named, Max. She likes to scuba dive, hike, and hang out with her family and nephews when she is on shore.

Good Luck, Sydney as you strive to become an Operations Officer! For not originally knowing about this career path you sure have excelled and are an example for others with similar interests.

Personal Log

All the people on TJ have been very nice and hospitable.  They freely answer my questions and are fun to hang out with during meals.  There are three people, however, who are super important to the smooth sailing of TJ.  They are the stewards, Ace & Brent and the Chief Steward, Miss Parker.  I never imagined that the food would be so varied and tasty!  A well-fed crew = a happy crew!

Menu for Monday 5 July 2022: Breakfast: Egg to Order, etc. Lunch: Chicken Cordon Blue, Soft Shell Crab Portabella Mushroom, etc. Dinner: Prime Rib w / Au Jus, Baked salmon w/ brown sugar glaze, fried tofu, etc.
Each day the menu is posted outside of the galley.  Just look at Tuesday’s offerings!
plate of food and place settings
Roasted duck, grilled vegetables, and wild rice.  Just a normal meal on the TJ.
cake
Beautifully decorated three-layer cake with strawberry icing and filling.
three stewards stand in the galley behind a serving line. Ms. Parker and Ace wear aprons.
The Heroes of the Galley (from left to right): Brent, Miss Parker, and Ace.

For the little Dawgs . . .

Q: Where is Dewey today?  Hint: it is the back of the ship.

Dewey the beanie monkey perches on a rail of some sort, with a pole behind him, and the wake of the ship visible in the water
Be careful, Dewey!  We don’t want you to fall into the water!

A: Dewey is sitting on the stern of the ship.  The propellers are under the stern.

Dewey the beanie monkey sits on the rail on the ship's stern, and the wake of the ship is visible behind
Dewey is sitting on the stern of the ship.  “Stern” rhymes with “learn”.  We are learning the different parts of the ship.

Well, that’s all for today.  Spending time aboard NOAA Ship Thomas Jefferson has been a terrific learning experience.  I am so thankful for the opportunity!