Laura Guertin: Collecting Data: Acoustic Survey, June 19, 2023

What looks like a long fishing rod attached to a ship's rail on the ocean

NOAA Teacher at Sea

Laura Guertin

Aboard NOAA Ship Oscar Dyson

June 10 โ€“ June 22, 2023


Mission: 2023 Summer Acoustic-Trawl Survey of Walleye Pollock in the Gulf of Alaska

Geographic Area of Cruise: Islands of Four Mountains area, to Shumagin Islands area
Location (2PM (Alaska Time), June 18): 55o 15.3391โ€ฒ N, 160o 17.8682โ€ฒ W

Data from 2PM (Alaska Time), June 18, 2023
Air Temperature: 8.9 oC
Water Temperature (mid-hull): 7.7oC
Wind Speed: 4 knots
Wind Direction: 182 degrees
Course Over Ground (COG): 356 degrees
Speed Over Ground (SOG): 12 knots

Date: June 19, 2023

Acoustic fisheries surveys seek to estimate the abundance and distribution of fish in a particular area of the ocean. In my case, this Summer Survey is looking at walleye pollock in the Gulf of Alaska. How is this accomplished? Well, it’s not through this method:

The Alaska walleye pollock is widely distributed in the North Pacific Ocean with the largest concentrations in the eastern Bering Sea. For this expedition, Oscar Dyson is traveling to specific regions in the Gulf of Alaska and running transects perpendicular to the bathymetry/contours (which are not always perpendicular to the shore) to take measurements using acoustics and targeted trawling to determine the abundance and distribution of walleye pollock which informs stock assessment and management models. For this blog post, let’s focus on how and why we can use acoustics to locate fish.

A map of the distribution of walleye pollock in the waters around Alaska. Alaska is centered in this map, but not disconnected from adjacent portions of Canada, and portions of Russia are visible to the east. Colors representing topography are visible, emphasized on the land of Alaska and depicted faintly on Canada and Russia. The ocean is depicted as a solid blue. We see latitude and longitude lines at ten degree intervals. We can see labels for the Beaufort Sea (north of Alaska), Chukchi Sea (northwest), Bering Sea (west), Bristol Bay (southwest), Gulf of Alaska (south and southeast.) The polygon representing the distribution of pollock is shaded with diagonal red lines. It starts in the Chukchi Sea, extends southwest out to the Bering Sea, and curves around the Aleutian Islands, hugging the coastline around the Gulf of Alaska.
Walleye pollock (Gadus chalcogrammus) are distributed broadly in the North Pacific Ocean and eastern and western Bering Sea. In the Gulf of Alaska, pollock are considered as a single stock separate from those in the Bering Sea and Aleutian Islands.  Image from Alaska Department of Fish and Game.
A screenshot of an electronic nautical chart of the area around the Alaska Peninsula. Overlain on the chart are straight blue lines connecting blue points in a boxy meandering path in and out from the coastline, west to east. A few segments are red instead of blue.
An snapshot of a nautical chart with transects plotted. The first transect was run during Leg 1 on June 14 at the furthest location to the west, then the ship worked its way back east with approximately 40 nautical miles between transects. Once Oscar Dyson reached the Shumagin Islands, survey work shifted into this area..

Our story starts with the fish itself. Alaska walleye pollock have a swim bladder. The swim bladder is an internal organ filled with gas that allows a fish to maintain its buoyancy and stability at depth.

One interesting effect of the swim bladder is that it also functions as a resonating chamber that can produce and receive sound through sonar technology. This connection was first discovered in the 1970s, when low-frequency sound waves in the ocean come in contact with swim bladders and they resonated much like a tuning fork and return a strong echo (see WHOI’s Listening for Telltale Echoes from Fish).

illlustrated diagram of the internal anatomy of a boney fish. The swim bladder is located in the middle of the fish, beneath the long, skinny kidney and behind the stomach.
Internal anatomy of a boney fish. From Wikipedia (CC BY-SA 3.0).
Illustration of a survey ship on the ocean surface, with the ocean cutaway so that we can see a cone of sound pulses extending out from the ship's hull to the ocean floor. A school of fish is depicted in the middle of the water column, in the cone of sound.
The sound pulses travel down into the water column, illustrated by the white cones here, and bounce back when encountering resistance. (from NOAA Fisheries)

NOAA Fisheries uses echo sounding, which works by emitting vertical pulses of sound (often referred to as pings), and measuring the return strength and recording the time for the signal to leave and then return. Anything having a different density from the surrounding water (in our case – fish, plankton, air bubbles, the seafloor) can return a signal, or “echo”.

The strength or loudness of the echo is affected by how strongly different ocean elements reflect sound and how far away the source of the element is. The seafloor usually makes the strongest echo because it is composed of rock which has a density different than the density of water. In fish, the swim bladder provides a contrast from the water. In addition, each fish species has a unique target strength or amount of sound reflected to the receiver. The size and shape of the swim bladder influence the target strength. There is a different target strength to length relationship for each species of fish – the larger the fish, the greater the strength of the returning echo.

It’s important to note that echo sounders cannot identify fish species, directly or indirectly. The only way we know which fish species is causing a signal is based on trawl catch composition. There is nothing within the acoustic data that lets us identify fish species, even with the catch data. This is a subtle, but important, distinction. Acoustic data, particularly calibrated acoustic data, in tandem with the information from the trawl, definitely allows us to count fish.

Where is the echo sounder on Oscar Dyson? Look at the figure in the next section of this post – it’s a sketch of NOAA Ship Rainier, but the placement of the echo sounder is the same for Dyson. You can see a rectangular “board” that is extended down from the center of the ship. This is called – what else – the center board! Attached to the bottom of the center board are the echo sounders. When lowered, the echo sounders sit at 9 meters below the level of the sea (~4 meters below the bottom hull of the ship).

Did you know… Southern Resident killer whales use their own echolocation clicks to recognize the size and orientation of a Chinookโ€™s swim bladder? Researchers report that the echo structure of the swim bladders from similar length but different species of salmon were different and probably recognizable by foraging killer whales. (reported in Au et al., 2010)


It starts with a calibration

Typical setup of the standard target and weight beneath the echo sounder. (from NOAA Fisheries)

Before we can begin collecting data, we need to calibrate the echo sounder. The calibration involves a standard target (a tungsten carbide sphere) with a known target strength. The calibration needs to be completed in waters that are calm and without significant marine life for the best results.

The sphere is suspended below the ship’s hull using monofilament lines fed through downriggers attached to ship railings. One downrigger is in line with the echo sounder on the starboard side, and the other two on the port side. This creates a triangle that suspends the sphere in the center of the echo sounder’s sound beam. By tightening and loosening the lines, the sphere can be positioned under the center of the sound beam and can also be moved throughout the beam. By doing an equipment calibration at the beginning and end of a survey, we can ensure the accuracy of our data.


  • What looks like a long fishing rod attached to a ship's rail on the ocean
  • Two people holding a ball on string on a ship
  • Shiny ball being lowered over side of ship

For further exploration

NOAA Ocean Service – Ocean Facts – How do scientists locate schools of fish?

Discovery of Sound in the Sea – How is sound used to locate fish?

NOAA Fisheries – Acoustic Echosounders–Essential Survey Equipment and Acoustic Hake Survey Methods on the West Coast

NOAA Ocean Service – Ocean Facts – What is sonar?

Science – Sounds like my favorite fish – killer whales differentiate salmon species by their sonar echoes

NOAA Fisheries – Sound Strategy: Hunting with the Southern Residents, Part 2

The Pew Charitable Trusts – Advanced Sonar Technology Helps NOAA Count Anchovy

Erica Marlaine: Onboard the City That Never Sleeps, June 28, 2019

NOAA Teacher at Sea

Erica Marlaine

Aboard NOAA Ship Oscar Dyson

June 22 โ€“ July 15, 2019


Mission: Pollock Acoustic-Trawl Survey

Geographic Area of Cruise: Gulf of Alaska

Date: June 28, 2018

Weather Data from the Bridge:

Latitude: 58ยบ 28.54 N
Longitude: 154ยบ 46.05 W
Wind Speed: 16.8 knots
Wind Direction: 190ยบ
Air Temperature:  11ยบ Celsius
Barometric Pressure: 102


Science and Technology Log

Scientists aboard NOAA Ship Oscar Dyson are estimating the numbers and biomass of walleye pollock in the Gulf of Alaska.  They use acoustics (sound data)  to help them do this.

acoustic readout
Acoustic representation of fish in the area


Acoustic representation of fish in an area

Echo sounders send an acoustic signal (ping) into the water.ย  The sound bounces off objects that have a different density than the surrounding water (such as the swim bladder in a fish) and returns back to the echo sounder.ย  Using the speed of sound, this technology can determine how deep the fish are in the water column.ย 

How much sound each object reflects is known as the target strength.  The target strength is dependent upon the type of fish and the size of the fish.  A bigger fish will give off more of an echo than a small fish will.  A fishโ€™s swim bladder is primarily what reflects the sound.  Smelt and krill do not have swim bladders. As a result, they do not reflect as much sound as a pollack would. Even though a big fish gives off more sound energy than a small fish of the same species, it is possible that a return echo could indicate either one big fish or several smaller fish clumped together. A big fish of one species could also give off similar sound energy to a big fish of a different species. For that reason, actual fish are collected several times a day in the nets described in a previous blog.

From a net sample, scientists determine the number of each species in the catch as well as the length and weight of individuals of each species. 

Measuring pollock
Measuring pollock

Additionally, scientists also determine the sex and age of the pollock.  The catch data is used to scale the acoustic data, which in turn allows scientists to estimate how many pollock there are of various size and age groups in a given area. These numbers help scientists  determine the sustainability of the pollock population, which in turn allows the North Pacific Fishery Management Council to set catch quotas. 

Counting krill
Counting krill


Krill Fun Facts:

Krill (aka euphausiids) are small crustaceans (a couple of millimeters long) of the order Euphausiacea.  The word โ€œkrillโ€ is a Norwegian word meaning โ€œa small fry of fish.โ€ Krill are found in every ocean and are a major food source. They are eaten by fish, whales, seals, penguins, and squid, to name a few.  In Japan, the Phillipines, and Russia, krill are also eaten by humans.  In Japan, they are called okiami.  In the Phillipines and Russia, they are known as camarones. In the Phillipines, krill are also used to make a salty paste called bagoong. Krill are a major source of protein and omega-3 fatty acids.

krill on spoon
There are many kinds of krill. Thus far, in the Gulf of Alaska, we have been seeing mostly Thysanoessa enermis, which measure approximately 1/2 inch in length.

Personal Log  

People often refer to New York as the city that never sleeps. The same can be said for the NOAA Ship Oscar Dyson. Life onboard the Oscar Dyson carries on 24 hours a day, 7 days a week.  There is never a time that the ship is not bustling with activity.  Everyone on the boat works 12-hour shifts, so someone is always working while others are sleeping (or doing laundry, exercising, or watching a movie in the lounge before they go to sleep.) Most people on the boat work either the noon to midnight shift or the midnight to noon shift.  However, the science team works 4 a.m. to 4 p.m., or 4 p.m. to 4 a.m. I am in the latter group.  It was easier to get accustomed to than I had imagined, although it is sometimes confusing when you look at your clock and wonder whether it is 5 a.m. or 5 p.m. since the sun is shining for most of the day.  Kodiak has only 4-5 hours of darkness now, and the sun sets at approximately midnight.  Therefore, it does not really feel like nighttime for much of my shift.

View
The view from NOAA Ship Oscar Dyson
Sunset
Views (and sunsets) like these make it easy to work the night shift!

Patricia Schromen, August 22, 2009

NOAA Teacher at Sea
Patricia Schromen
Onboard NOAA Shipย Miller Freeman
August 19-24, 2009ย 

Mission: Hake Survey
Geographical Area: Northwest Pacific Coast
Date: Thursday, August 22, 2009

Bringing in the nets requires attention, strength and teamwork.
Bringing in the nets requires attention and teamwork.

Weather Data from the Bridgeย 
SW wind 10 knots
Wind waves 1 or 2 feet
17 degrees Celsius

Science and Technology Logย 

In Science we learn that a system consists of many parts working together. This ship is a small integrated system-many teams working together. Each team is accountable for their part of the hake survey. Like any good science investigation there are independent, dependent and controlled variables. There are so many variables involved just to determine where and when to take a fish sample.

Matt directs the crane to move to the right. Looks like some extra squid ink in this haul.
Matt directs the crane to move to the right. Looks like some extra squid ink in this haul.

The acoustic scientists constantly monitor sonar images in the acoustics lab. There are ten screens displaying different information in that one room. The skilled scientists decide when it is time to fish by analyzing the data.ย  Different species have different acoustical signatures. Some screens show echograms of marine organisms detected in the water column by the echo sounders. With these echograms, the scientists have become very accurate in predicting what will likely be caught in the net.ย The OOD (Officer of the Deck) is responsible for driving the ship and observes different data from the bridge. Some of the variables they monitor are weather related; for example: wind speed and direction or swell height and period. Other variables are observed on radar like the other ships in the area. The topography of the ocean floor is also critical when nets are lowered to collect bottom fish. There are numerous sophisticated instruments on the bridge collecting information twenty four hours a day. Well trained officers analyze this data constantly to keep the ship on a safe course.

Here come the hake!
Here come the hake!

When the decision to fish has been made more variables are involved. One person must watch for marine mammals for at least 10 minutes prior to fishing. If marine mammals are present in this area then they cannot be disturbed and the scientists will have to delay fishing until the marine mammals leave or find another location to fish. When the nets are deployed the speed of the boat, the tension on the winch, the amount of weight attached will determine how fast the nets reach their target fishing depth. ย In the small trawl house facing the stern of the ship where the trawl nets are deployed, a variety of net monitoring instruments and the echo sounder areย watched. The ship personnel are communicating with the bridge; the deck crew are controllingย the winches and net reels and the acoustic scientist is determining exactly how deep and theย duration of the trawl. Data is constantly being recorded. There are many decisions that must beย made quickly involving numerous variables.

Working together to sort the squid from the hake.
Working together to sort the squid from the hake.

The Hake Survey began in 1977 collecting every three years and then in 2001 it became a biannual survey. Like all experiments there are protocols that must be followed to ensure data quality. Protocols define survey operations from sunrise to sunset. Survey transect line design is also included in the protocols. The US portion of the Hake survey is from approximately 60 nautical miles south of Monterey, California to the US-Canada Border. The exact location of the fishing samples changes based on fish detected in the echograms although the distance between transects is fished at 10 nautical miles. Covering depths of 50-1500 m throughout the survey. Sampling one species to determine the health of fish populations and ocean trends is very dynamic.

Weighing and measuring the hake is easier with automated scales and length boards.
Weighing and measuring the hake.

Personal Logย 

Science requires team work and accountability. Every crew member has an integral part inย making this survey accurate.ย  A willing positive attitude and ability to perform your best isย consistently evident on the Miller Freeman. In the past few days, Iโ€™ve had the amazingย opportunity to assist in collecting the data of most of the parts of this survey, even launching the CTD at night from the โ€œHero Platformโ€ an extended grate from the quarter deck.

Stomach samples need to be accurately labeled and handled carefully.
Stomach samples need to be accurately labeled and handled carefully.

Before fishing, Iโ€™ve been on the bridge looking for marine mammals.ย  When the fish nets have been recovered and dumped on the sorting table, Iโ€™ve sorted, weighed and measured fish. For my first experience in the wet lab, I was pleased to be asked to scan numbers (a relatively clean task) and put otoliths (ear bones) into vials of alcohol. I used forceps instead of a scalpel. Ten stomachs are dissected, placed in cloth bags and preserved in formaldehyde. A label goes into each cloth bag so that the specimen can be cross referenced with the otoliths,ย weight, length and sex of that hake. With all the high tech equipment itโ€™s surprising that a lowlyย pencil is the necessary tool but the paper is high tech since it looks regular but is water proof.ย  Itย was special to record the 100thย catch of the survey.

Removing the otolith (ear bone) with one exact incision. An otolith reminds me of a squash seed or a little silver feather in jewelry.
Removing the otolith (ear bone) with one exact incision. An otolith reminds me of a squash seed or a little silver feather in jewelry.

Each barcoded vial is scanned so the otolith number is linked to the weight, length and sex data of the individual hake.
Each barcoded vial is scanned so the otolith number is linked to the weight, length and sex data of the individual hake.

Questions for the Dayย 

How is a fish ear bone (otolith) similar to a tree trunk? (They both have rings that can be counted as a way to determine the age of the fish or the tree.)

The CTD (conductivity, temperature and depth) unit drops 60 meters per minute and the ocean is 425 meters deep at this location; how many minutes will it take the CTD to reach the 420 meter depth?

Think About This: The survey team directs the crane operator to stop the CTD drop within 5 meters of the bottom of the ocean.ย  Can you think of reasons why the delicate machinery is never dropped exactly to the ocean floor?ย ย Some possible reasons are:

  • The swell in the ocean could make the ship higher at that moment;
  • An object that is not detected on the sonar could be on the ocean floor;
  • The rosetta or carousel holding the measurement tools might not be level.

Launching the CTD is a cooperative effort. The boom operator works from the deck above in visual contact. Everyone is in radio contact with the bridge since the ship slows down for this data collection.

Retrieving the CTD
Retrieving the CTD

Jennifer Fry, July 18, 2009

NOAA Teacher at Sea
Jennifer Fry
Onboard NOAA Ship Miller Freemanย (tracker)
July 14 – 29, 2009ย 

Mission: 2009 United States/Canada Pacific Hake Acoustic Survey
Geographical area of cruise: North Pacific Ocean from Monterey, CA to British Columbia, CA.
Date: July 18, 2009

Weather Data from the Bridgeย 
Wind speed: 40 knots
Wind direction: 350ยฐfrom the north
Visibility: foggy Temperature: 12.9ยฐC (dry bulb); 12.0ยฐC (wet bulb)
Wave height: 8-10 feet

Science and Technology Logย 

Lisa Bonacci, chief scientist and Melanie Johnson, fishery biologist in the Freemanโ€™s acoustics lab
Lisa Bonacci, chief scientist and Melanie Johnson, fishery biologist in the Freemanโ€™s acoustics lab

Acoustics: Lisa Bonacci, chief scientist, and Melanie Johnson, fishery biologist, are in the acoustics lab onboard the Miller Freeman as it travels along a transect line. NOAA scientists can detect a variety of marine life under the sea. They use sonarโ€”sound waves bouncing off an objectโ€”to detect the animals.ย There is an onboard sonar system that puts out four different frequencies of sound waves.ย  Each type of fish will give off a different signal depending on its size, shape, and anatomy.ย  The fish are then identified on the sonar computer readout.ย  The strength of the sonar signal will determine the number of hake and the way that they are swimming.ย  As soon as it appears on the sonar as if hake are present, Ms. Bonacci then calls the bridge to request that we trawl for fish.

This is the sonar readout as itโ€™s seen on the computer screen.
This is the sonar readout as itโ€™s seen on the computer screen.

Personal Logย 

The boat was rocking in all directions with 40 knot winds and 8-10 foot waves. The fishing trawl brought up scores of fish including a lot of hake. The sonar signals worked really well to locate them.ย We dissected and measured many fish, but not before we sat in a giant vat of hake (see photo.)ย  It was a great learning day.

Animals Seen Todayย 
Hake,spiny dogfish, Humbolt squid, Myctophidae, and Birds.

Here we are in a giant vat of hake!
Here we are in a giant vat of hake!

Discovery from the Brinyย 
As the trawl net was raised from the depths
The sun broke through the clouds revealing a sparkling azure sky.
Scores of seagulls circled the stern
In the hopes of a bountiful offering
Tasty morsels from the deep
Soon to be thrown overboard.

American fishery biologist, Melanie Johnson, and Canadian fishery biologist, Chris Grandin, take biological samples.
American fishery biologist, Melanie Johnson, and Canadian fisheryย biologist, Chris Grandin, take biological samples.

Megan Woodward, July 16, 2009

NOAA Teacher at Sea
Megan Woodwardย 
Onboard NOAA Ship Oscar Dyson
July 1 – 18, 2009

Mission: Bering Sea Acoustic Trawl Survey
Geographical Area: Bering Sea/Dutch Harbor
Date: Tuesday, July 16, 2009

All bony fish have otoliths (ear bones) that can be used for calculating the age of the fish.
All bony fish have otoliths (ear bones) that can be used for calculating the age of the fish.

Weather and Locationย 
Position: N 58 13.617; W 171 25.832
Air Temp: 7.2 (deg C)
Water Temp: 6.54 (deg C)
Wind Speed: 15 knots
Weather: Overcast

Science and Technology Logย 

One of the most interesting things Iโ€™ve learned while participating in the pollock survey is the importance of otoliths. Otoliths are small bony structures situated in the head of all bony fish, and are often referred to as โ€œear stones.โ€ย  For each haul we brought on board, 50 otoliths were taken from large fish (3+ years) and/or 5 from small fish (younger than 3 years old).ย  The otolith holds the key to accurately calculating the age of a fish (scales and vertebrates can also be used, but are not as reliable).ย  The average age of fish from the samples collected in the survey helps scientists estimate the strength of a year-class and size of the stock in the future.

Back in the lab, otolith samples are carefully catalogued.
Back in the lab, otolith samples are carefully catalogued.

The first step in taking an otolith is pictured above. An incision is made on the back of the pollockโ€™s head, and an otolith is removed using tweezers.ย  Once the otolith is removed, it is rinsed with water and placed in a glass vial containing a small amount of 50% ethanol solution for preservation purposes.

The otoliths are taken back to NOAAโ€™s aging lab where ages are determined by reading rings similar to those on a tree trunk. A crosscut is made through each otolith revealing a pattern of rings. Scientists then count the rings to determine the age of the fish.ย  Lightly burning or staining the otoliths makes the rings more visible.

Cod and sole otoliths
Cod and sole otoliths

New material is deposited on the surface of the otolith creating the rings as the fish grows. The translucent/light zones indicate the main growth that takes place in the summer months.ย  The opaque/darker rings appear during the winter months when growth is slower. Because of the slower growth rate, new material is deposited on top of the old layers resulting in the dark ring. Each pair of light and dark zones marks one year.ย In fish younger than one year of age, rings can be identified for each day of life!

woodward_log6bPersonal Logย 

I was surprised to discover otoliths have been used for aging fish since the early 1900โ€™s.ย  While working in the fish lab I observed the scientist removing otoliths, however I did not remove any myself. The cracking sound heard when cutting the head open was like fingernails on a chalkboard to me.ย  I spent most of my time in sorting and measuring fish, as well as assisting with the stomach collection project.

For the next two days we will be heading back to Dutch Harbor, and the likelihood of trawling for more fish is minimal.ย  Our remaining work assignment is to give the fish lab a thorough cleaning. Everything in the lab is waterproof, so weโ€™ll put on our Grundenโ€™s (orange rubber coveralls) and boots and spray down the entire space.ย Working and living at sea for nearly 3 weeks has been an eye opening experience. My time aboard the Oscar Dyson has flown by. I have learned so much about fisheries research and life at sea. Dry land, however, will be warmly welcomed when we get back to Dutch Harbor.ย  Would I do it again? Absolutely.

Animal Sightingsย 

The whales have an incredible way of showing up when I donโ€™t have my camera.ย  Yesterday I spotted two orcas, but did not get a photograph. The seabirds continue to circle. I like the murres most.ย  They look like small, flying penguins.

New Vocabularyย 

Otoliths- Small bony structures situated in the head of all bony fish. Often referred to as โ€œear stones.โ€

Stock- Refers to the number of fish available, supply.

*** Much of the information used for this log entry was found on the Centre for Environment, Fisheries & Aquaculture Science (Cefas) web site.