John Taylor-Lehman, June 29, 2011

NOAA Teacher at Sea 
John Taylor-Lehman 
Onboard R/V Savannah 
June 24 – July 1, 2011 
NOAA Teacher at Sea: John Taylor-Lehman 
Ship: R/V Savannah 
Mission: Fisheries Survey
Geographical area of the cruise: Continental Shelf off of Florida
Date: Wednesday, 29 June 2011

Weather Data from the Bridge 
Longitude. 80.15
Latitude 29.08
Salinity 36.343
Temperature 27.25
Barometric pressure 32.00
Depth 47.7 m
Winds S,SW 26 knots

Science and Technology Log 

We continue to bait and deploy traps during the daylight hours. Three sets of 6 traps are typically deployed at one location. On Tuesday, 4 sets were deployed because of the low number of fish caught on the previous 3 sets.

There is an art to selecting sites and retrieving traps. Some traps can get hung-up on the ledges they were meant to be resting upon. Our Chief Scientist, Nate Bacheler, must communicate with the winch operator and captain with gestures to subtly move the tether in the hopes of freeing the trap. In rare events, a trap can be lost.

Here I am getting ready to deploy a fish trap.  On the right is the camera that goes on the front of the trap.

Camera on top of the fish trap.

Here I am getting ready to deploy a fish trap. On the right is the camera that goes on the front of the trap

Here I am getting ready to deploy a fish trap. On the right is the camera that goes on the front of the trap

Mounted on each trap are 2 video cameras. They record the habitat and activity in the vicinity of the trap. The resolution on the videos is remarkable! During the winter months the films will be viewed and the fish species identified and counted.

What Happens to the Data? 

Eric taking measurements on a Red Snapper

Eric taking measurements on a Red Snapper

The data collected on these cruises allows scientists to create an “index of abundance” for each species of interest. This information is combined with information from other sources and in-put to an existing assessment (population) model. The South Atlantic Fisheries Management Council then looks at the output from the model to decide on management regulations. They’ll decide on loosening or strengthening harvesting rules for each species.

So What Happens Once the Fish Are Caught? 

There is a great deal of information collected on each fish caught. For example: site location, weight, species, total length, length to fork in tail, and length before the tail. Select fish are later dissected to collect their otoliths (a bone in the head that can be used to determine age) and gonads (for maturity and sex determination). All fish are kept on ice in a large cooler until they are processed. Some of the fish are filleted, wrapped and frozen to ultimately be given away to charity.

Personal Log 

I no longer see the placid Atlantic under the ship. Strong winds (40 knots) have been blowing and stirring up the surface, creating 3-4 ft. waves and at times 4-5 ft. My stomach has noticed the change in conditions so I have been trying to keep busy and my mind distracted. Tried chewing some ginger, a remedy many people have suggested. Later, as the seas calmed and/or the ginger took effect, my stomach settled.

The weather conditions have stimulated much discussion among the science staff and crew. It was decided that conditions were ok to deploy the traps but too “sketchy” to retrieve them safely.

Zeb , David and Nate, members of the science crew

Zeb , David and Nate, members of the science crew

The chief scientist seems to have many contingency plans for when the weather does not cooperate. Decisions can be made at a moment’s notice to head to another site or cancel the trap drops. The fall back plans maximize the productivity of the research with the limited time at sea. The “down” time has given me some extra time to interview the science staff and crew. They are all very interesting people.

Zeb , David and Nate, members of the science crew

New animal sightings: (birds) brown boobies, yellow-throated warbler, Wilson’s storm-petrel, royal terns, (fish) reticulated moray eel, purplemouth moray, and red porgy.

Here I am holding a Red Snapper

Here I am holding a Red Snapper

John Taylor-Lehman, June 26, 2011

NOAA Teacher at Sea 
John Taylor-Lehman 
Onboard R/V Savannah 
June 24 – July 1, 2011 
NOAA Teacher at Sea: John Taylor-Lehman 
Ship: R/V Savannah 
Mission: Fisheries Survey
Geographical area of the cruise: Continental Shelf off of Florida
Date: Monday 26, June 2011

Weather Data from the Bridge 
South West Winds 10-15 knots
Cloudy
Barometric Pressure 29.73

Science and Technology Log 

I assisted in deploying and retrieving 6 “chevron” fish traps at a time. This was done several times at designated sites. The traps are pushed off the back of the boat (fantail) and winched up along the starboard side. Two buoys are attached to each trap. The traps rest on the bottom of the Atlantic between 45 and 230 ft. deep. Locations are determined before the cruise but can be changed if necessary. Ideal locations have hard bottom with some relief.

taylor-lehman_log02_page_1_image_0001

Here I am (left) getting traps ready with the crew

Traps are baited with 24 “menhaden”, which is a type of fish. Some of the bait is suspended in the trap while other rests on the bottom. The traps “soak” for 90 minutes before being retrieved. There is great anticipation as each trap is being winched aboard the ship. We are all hoping for large numbers of our target fish: grouper and snapper.

This collection technique has been used for 22 years, which allows valid comparisons of data over time. The fish found in the traps thus far are: gag grouper, Warsaw grouper, red snapper, vermillion snapper, sand perch, black sea bass, gray triggerfish.

Personal Log 

Flying Fish

Flying Fish

The entire science staff and ship crew have all been very kind and helpful to me, the novice. They have readily answered all my questions, whether it is about the ship operations or the research being conducted. They have gone out of their way to bring to my attention items or events they think would be of interest to me.

Last evening we spent the last hours of our shift processing black sea bass. I learned how to remove the otoliths from the skull and the reproductive organs from the body cavity. The former can be used to age the fish and the latter to determine maturity and sex.

This is called an oyster toad fish

This is called an oyster toad fish

While walking on the back of the boat last night I heard a great deal of splashing in the water. The lights from the ship were bright enough to illuminate the water below me, so in I was able to see 6 dolphins in the water. They were feeding on the many flying fish that were attracted to the ship’s lights. I imagine a few of the fish were able to escape because the dolphins remained for at least 1.5 hours. Some of the dolphins were able to grab the fish out of the air.

Unusual sights: 4 cruise ships heading south, a double rainbow, oyster toad fish

Margaret Stephens, May 25-27

NOAA Teacher at Sea: Margaret Stephens
NOAA Ship:
Pisces 
Mission: Fisheries, bathymetric data collection for habitat mapping
Geographical Area of Cruise: SE United States continental shelf waters from Cape Hatteras, NC to St. Lucie Inlet, FL
Dates: May 25-27, 2011

Weather Data from the Bridge 

View from the Pisces bridge: calm seas

View from the Pisces bridge: calm seas

As of 11:43 May 27, 2011
Latitude 29.94
Longitude 80.29
Wind Speed 0.60 knots; calm
Wind Direction 167.50 º
Surface Water Temperature 26.60 ºC
Air Temperature 25.70 ºC
Relative Humidity 81.00 %
Barometric Pressure 1013.70 millibars (mb)
Water Depth 54.59 m
Skies: clear to partly cloudy

Science and Technology Log 

I struggle to measure a squirmy black sea bass, Centropristis striata.

I struggle to measure a squirmy black sea bass, Centropristis striata.

Previous logs describe in some detail the three principal components of this research work aboard Pisces: overnight mapping using acoustics (SONAR) technology; daytime fish trapping; and underwater videography. The nighttime mapping is used to identify the hardbottom habitats favored by red snapper and grouper species and helps the science team determine where to set traps the next day. The videography provides additional visual clues to the contours and composition of the sea floor, water clarity, and marine life in the area.

Scientific research at sea is far from neat, clean and predictable. Messy, hot, smelly, sometimes frustratingly unpredictable – and not for the weak-stomached– are better descriptors. The work goes on as long as it takes, well past the scheduled twelve hour shifts. The “wet” lab could just as well be called the “fishy” lab. For good reason, the seasoned researchers wear special waterproof bibs and boots and clothing they don’t mind getting dirty. A distinctly fish-infused aroma fills the air and embeds skin, hair and garb. The best laid plans go awry. Equipment and instruments are checked, double- and triple-checked; nevertheless, they don’t always function properly or yield the expected results. Despite using high-tech SONAR to locate what appear to be promising locations, and baiting traps with the most appetizing bait imaginable (dead menhaden), the fish move around and are not always lured into the traps we set so carefully. While this project has been graced so far with unusually calm seas, the currents, other boat traffic, threatening weather and other factors can cause the ship to deviate from its appointed path.

These scientists seem to thrive as they meet the challenges of the ever-changing seascape, solving problems and continuing the hard work day and night.

Todd Kellison (l) and Warren Mitchell (r) confer at sunrise as their long night’s acoustics lab work continues past dawn. Photo credit: David Berrane

Todd Kellison (l) and Warren Mitchell (r) confer at sunrise as their long night’s acoustics lab work continues past dawn. Photo credit: David Berrane

After spending the first few days south of Cape Canaveral, mapping and trap sampling, calibrating and making adjustments to the instruments and deployment procedures, we headed north, because strong currents and turbid (cloudy) waters were limiting the team’s ability to deploy traps and capture useful underwater video images. When the currents are too strong (>2.5 – 3 knots, or nautical miles per hour), the moving water tends to drag the traps, making it very difficult to position them in the desired locations on the sea floor. In addition, the currents swirl sediments around, reducing visibility and yielding video images that are less than revealing. Since moving north of Cape Canaveral, the currents have been less of a problem, and the water clarity has improved.

The mapping, trapping, and video procedures all went more smoothly after the team made adjustments guided by the first days’ experiences. The acoustics team leaders, Warren Mitchell and Todd Kellison, have worked assiduously throughout the taxing, tiring overnight shifts to produce useful bathymetry maps with the ship’s state-of-the-art ME70 multibeam sonar unit. Investigator Jen Weaver has applied her expertise with GIS and mapping software to help Warren and Todd translate the sonar data into three dimensional maps most useful for Nate Bacheler, the Chief Scientist, to plan the trapping routes.

Sonar image shows ledges and outcrops. Photo credit: Christina Schobernd

Sonar image shows ledges and outcrops. Photo credit: Christina Schobernd

By the second and third nights on the acoustics team, I was getting better at recognizing the features on the sonar screen displays, such as ledges and rocky outcroppings, that are indicative the hardbottom habitats we were seeking. Chief Scientist Nate has perfected the timing and communications with the deck crew so that the traps are released off the stern deck at just the right time, sinking to the bottom in the desired locations. Radio transmitter in hand, Nate studies an array of monitors displaying the sonar images of the sea bottom mapped the night before, the navigation system with the ship’s position and path, and a live video feed showing the crew awaiting instructions on the deck. The helmsman alerts Nate that the ship is approaching the next drop point and slows the ship.

Nate issues a series of commands to the deck crew by radio:

Crew deploys baited trap above guard rail on

Crew deploys baited trap above guard rail on

Ready the cameras. Ready the cameras.” – A few minutes before the ship approaches each trap point, a team member activates the two video cameras attached to the trap.

Crew deploys baited trap above guard rail on

Go on standby; stand by to deploy trap.”- The deck crew positions the trap at the edge of the stern (back) deck and makes sure all the lines are clear.

Deploy trap; deploy trap.” The deck crew pushes the trap over the edge of the stern and lets the line attaching it to the ship run free. Once the line goes slack, indicating the trap has reached the bottom, the crew releases the bright orange buoys to float on the surface, marking the trap locations to warn other ships to steer clear and facilitate retrieval.

The deck crew then positions the next trap, and the helmsman, Nate and crew repeat the choreographed sequence until all six traps in each set are in place. Soon after, the helmsman maneuvers the ship for the deck crew to retrieve the traps and their contents one by one using a pothauler, a special hoist.

Technical/Logistical Challenges 

We ran into some initial difficulties with the video cameras attached to the traps when they turned off and failed to record. As good scientists, the team observed the procedures closely and determined that the force of the cameras hitting the water upon release was probably causing them to shut off. At first, the traps with cameras attached were being pushed off the stern above a fixed guard rail, which sits about 1.5 meters above the deck, with three removable guard wires below the rail. A simple adjustment seems to have fixed that problem – instead of releasing the traps above the guard rail, the crew lowered the traps to the deck floor and pushed them off more gently from there. This modified procedure seems to have done the trick, as the cameras have not shut off since.

Science team adjusts camera-trap arrays on stern deck

Science team adjusts camera-trap arrays on stern deck

We are constantly reminded of the ship’s mantra, “Safety first!”, as anyone working on deck while machinery is in operation is required to wear a hardhat and personal flotation device (PFD). He or she who forgets to do so is quickly alerted by others. Because the change in the trap release procedure necessitated removing the three safety wires below the stationary guard rail, leaving a gap large enough for a person to slip overboard, the crew members tied themselves to tethers attached to the deck. Falling off the stern of the ship is dangerous, not least because the propellers turn rapidly and create a backwash effect that could draw a person underwater, even one wearing a PFD.

After each set of six traps is collected, the crew and wet lab team prepare them for redeployment. They empty any fish caught from the traps into bins, separate them into species, then weigh, measure, and release or preserve them for further study. With the help of the deck crew, two or three members of the science team stay on the side deck, dressed in waterproof bibs, boots, life vests and helmets. They detach and dry the cameras and hand them to the dry lab video coordinator, Christina Schobernd, who immediately removes the memory cards, sets up the video to view, and readies the cameras for the next trapping sequence. Occasionally, a camera tilts out of alignment, possibly in the jolt of travel or by hitting something underwater or on the bottom. Each time that happens, Christina meticulously assesses the situation and adjusts the cameras’ attachments.

Under these conditions, working with expensive equipment, it is crucial to anticipate possible problems and build redundancy into the operations as much as possible. This year, the team added a second, high-definition camera to the video array, and each camera is attached to the trap frames with at least six heavy-duty plastic ties and a tether wire and clip. That tether has been a camera-saver, as in one instance the cameras somehow broke free and would have been lost without it.

Fish measuring “assembly line” in the wet lab

Fish measuring “assembly line” in the wet lab

Thanks to good planning, enhanced by a measure of good luck, so far we have not lost any traps or equipment. It is not unheard of to have a trap break free from impact, from a boat propeller running over and cutting the line, or for some other reason. If a trap breaks loose in a place that’s too deep for human divers to search, or if the ship is not equipped with diving capability or a ROV (remote operating vehicle), the trap must be given up for lost.

Once the traps’ fishy contents are brought in and separated by species, three to four people in the wet lab process the fish in assembly-line fashion, as described in the previous log. With traps containing one hundred fifty (150) fish or more, we have to work fast and furiously to weigh, measure and release them before the next haul is aboard. The fish flop and squirm and squirt, and as I learned the first time I handled them, the black sea bass have some mighty sharp spines that can penetrate even the heavy, protective gloves we wear.

To ready the array for the next trap set, the team then

  •  “freshens” the bait by taking out any fully or partially eaten bait and replacing it with the same number of whole menhaden fish;
  •  reattaches the cameras;
  • lines up the numbered traps on deck, ready to go again.

Sometimes, the interim between trap sets coincides with the ship’s lunch time: 11 a.m. If so, the science team takes a short break to refuel with Steward Jesse Stiggens’ tasty culinary creations. If not, the stewards leave the lunch buffet available for whenever the team can get away for a few minutes. While the traps are “soaking” (sitting on the sea floor for the required ninety minute intervals), the science team keeps busy viewing video from the previous haul, processing fish specimens, tidying the deck and lab area, speculating about what the next trap might yield, and telling fish stories from past field work. As anyone who has spent time around fishers (the gender-neutral form of fishermen) knows, fishing stories always get better with time!

Processing and Collection of Biological Samples 

Otolith showing age rings Photo source: dnr.state.oh.us

Otolith showing age rings Photo source: dnr.state.oh.us

To assess fish stock and population trends, scientists must do more than identify species and catch, weigh and measure fish. They also determine the sex, size and ages of fish and genetic diversity within the populations studied. Connecting size and age can help determine the fishes’ growth rates, where they are in their reproductive cycles, and how likely they are to spawn, or reproduce.

Why is it important to determine the age of fish? By knowing the age of fish, fisheries managers can better understand and monitor how fish populations change over time, and how they are affected by environmental stresses or disturbances, including environmental changes, storms, pollution, commercial and recreational fishing, natural mortality, predation, and changes in the availability of food. The age information helps inform policies promoting fishing practices that protect the fish resources for sustainable, long-term benefit.

David Berrane removes otoliths from red snapper, Lutjanus campechanus Photo credit: Christina Schobernd

David Berrane removes otoliths from red snapper, Lutjanus campechanus Photo credit: Christina Schobernd

To determine fish age most accurately, the scientists remove otoliths, two bones located on either side of fish’s skull that are analogous to the human ear bone. The otoliths show annual growth rings, so the technique used is similar to counting tree rings. You may clickhere to try aging a sample fish.

On board Pisces, the experienced scientists remove the otoliths from dead fish with a sharp knife and scalpel, then place the otoliths in small envelopes, labeled with the date and location caught, ready to be analyzed back in laboratories on land. At the same time, they preserve tissue samples used for DNA/genetic analysis. They may also remove the gonads, or egg sacs, of female fish, if they are needed for further study. They can approximate how close the fish are to spawning based on the condition of the egg sac. The closer they are to spawning, the fuller and larger the sacs become.

Removing egg sacs from female black sea bass, Centropristis striata

Removing egg sacs from female black sea bass, Centropristis striata

Through laboratory analysis using DNA from tissue samples, scientists can evaluate the genetic diversity within each species and other population dynamics. Genetic diversity among fish populations, as in other animal and plant species, is desired because more genetically diverse populations are generally more resilient, more resistant to disease and more able to withstand changes in environmental conditions, availability of food, and other stresses.

Personal Log 

We’ve been fortunate to have had a stretch of unusually fine weather and calm seas. Thank goodness, not a single person has shown a hint of sea sickness. It may be bad luck to say this while we are still out on the water, but I have never been seasick, and I certainly would not want this to be the first time. I’ve seen people who literally turned green and felt absolutely miserable while traveling on rough seas. Some of the crew members who served in the United States Navy or on commercial vessels told me that they had been violently sick every day for weeks when they first went to work at sea. Most eventually get over that. I cannot imagine how debilitating and horrible it must be to feel so wretched. There’s no place to go once you are on a ship — you cannot just jump overboard and swim home through long distances and possibly shark-infested waters, although if you are sick enough, that prospect might seem a welcome relief!

Significant events 

Late one afternoon, I noticed that we had changed direction. We had been heading south, and then turned back north. Since this was not the planned route, I thought perhaps I had missed or misunderstood something, so I went up to the bridge to investigate. Commander Jeremy Adams (the CO = Commanding Officer) informed me that he had turned the ship around in response to a radio call from the Coast Guard, the branch of the armed services of the United States in charge of monitoring the coasts for navigation, safety and law enforcement. The radio call was a Pan-pan alert, one step short of the emergency Mayday call that mandates immediate action. A Pan-pan is urgent but not imminent, and ships in the area are not required to respond. In this case, the Coast Guard announced that they had received a report of a partially submerged small boat with possible man overboard/missing. Since Pisces was the closest vessel to the reported location, CO Adams made the decision to deviate from the planned course and redirect her at nearly full speed, approximately fourteen knots (nautical miles per hour), to search and assist if necessary. As Captain Jerry put it, even though he was not obligated to respond, he would not have been able to rest knowing there was a possibility the ship under his command could have helped. While en route there, another radio relay from the Coast Guard canceled the Pan-pan, because the initial report was apparently a false alarm. The CO informed me that false alarms of this kind occur all too often. Sometimes disgruntled or troublemaking recreational boaters, perhaps annoyed with the Coast Guard’s vigilance or just pulling a prank, call in alarms. These are akin to and at least as dangerous as intentionally false bomb scares or fire alarms on land. Such maliciously false reports take emergency personnel and resources away from true emergencies, cause tremendous waste of public funds, and can put emergency responders and others at risk. At sea, if the perpetrators are caught, they can be fined heavily and held responsible for all the costs incurred.

Devastation in Joplin, Mississippi 

On Sunday, May 22, news of the catastrophic tornado in Joplin, Mississippi reached Pisces. One of the crew members watched the news feed in horror, as the images of an elementary school that had been completed flattened played over and over again on the large screen in the mess. His friend lived just two blocks from that same school and had probably been at home when the powerful twister hit. The crew member tried in vain to call her cell phone or reach anyone who might have heard from her.

In the next hours, we learned that this NOAA ship’s crew is like family. The CO authorized the crew member to take personal leave and arranged for Pisces to meet a Coast Guard vessel the next morning to transport the young man to shore, so he could catch a flight and drive to Mississippi to search for his friend. Since he is also a certified medic, he would be allowed in to the town, despite any official restrictions.

We all felt for him and waited anxiously for word from Joplin. Thankfully, a day later, the ship received a message that his friend was alive and physically intact, although her home and entire neighborhood were destroyed, and so many other residents were critically injured, missing or dead.

It would be terrible to be isolated at sea in such circumstances and feel utterly helpless. I was reminded of the sacrifices so many service members make. As other crew members who had served in the U.S. Navy and other military branches know all too well, home leave, even in emergencies, is not always possible. Many of them had missed key personal events and tragedies while they were away from home on active duty.

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