shark – Page 2 – NOAA Teacher at Sea Blog

August 4, 2023August 6, 2023

Martin McClure: Let’s Talk Sharks, August 4, 2023

NOAA Teacher at Sea

Martin McClure

NOAA Ship Oregon II

July 25– August 9, 2023

Mission: Shark/Red Snapper Bottom Longline Survey

Geographic Area of Cruise: Gulf of Mexico/Atlantic Ocean

Date: August 4, 2023

Latitude: 33°47.753′ N

Longitude: 78°13.019 W

Air Temperature: 22.3 kph

Wind Speed: 26° Celsius

Science and Technology Log: Meeting the tiger shark

Let’s face it, sharks are cool! They are an apex predator of the ocean. They are hunters and capture our imagination. Like most people, sharks are fascinating creatures if you take the time to get to know them.

Sharks are an ancient group of fishes. They have been on Earth since before there were any trees. They are intelligent and can be are very curious creatures that want to investigate new objects. Some species have social structures and recognize each other, and form relationships that last over many years. Some sharks have been observed hunting in groups. Personality, or should I say “sharkonality,” wise, individuals have been observed to be more assertive or more timid. They have sensory organs called ampullae of Lorenzini that sense electricity to help them find prey.

Sharks are quite varied. Some sharks must keep moving to breathe, while others can sit on the sea floor for hours at a time. Some sharks lay eggs, while others have live pups.

view from above of a tagged tiger shark in a sling net suspended on the outside of the ship's railing, above the water. three crewmembers stand on deck near the rail. they are wearing hard hats, life vests, and gloves. — A tiger shark in the sling ready to be released. Notice the tag by its dorsal fin.

So far we have caught sandbar, Atlantic sharpnose, tiger, scalloped hammerhead, and great hammerhead sharks. The Atlantic sharpnose, sandbar, and tiger sharks all belong to the family Carcharhinidae, or requiem sharks. They have a flattened but not wide snout. In many species teeth are similar because in the top row the teeth are triangular and serrated (like a saw) and in the bottom row they are narrow and smooth-edged. Their eyes have a nictitating membrane that functions like an eyelid, but they can see through it. Interestingly, reproduction varies within this family of sharks.

two gloved hands hold a small tiger shark up for a photo; only the middle of the shark, from the base of the caudal fin to the gills, is visible (tail and head are out of view.) This close-up shows the black and white markings on the shark, more like spots than tiger stripes. — Markings on a tiger shark pup. (ba-by shark doo doo doo doo doo doo)

Tiger sharks are striking to see up close. Their markings on their skin gives them their name and makes them easy to identify, even for a novice. Young tiger shark markings tend more toward spots that can grow into bars or stripes as they age. The bars will fade as the shark grows older.

The teeth of a tiger shark are easily identifiable as they are curved with a notch in it. Unlike other sharks in the Carcharhinidae family, the bottom row of teeth has the same triangular, serrated teeth as the top row. They eat a variety of food including crabs, squid, bony fishes, turtles, rays and birds as well as many other animals even other sharks. They have also been known to eat boat cushions, tin cans and even license plates.

They are one of the larger sharks, often growing 11 – 14 feet long and up to 1400 pounds. In the United States, tiger sharks are found from Massachusetts to Florida and the Gulf of Mexico.

Tiger Sharks have live babies called pups. They are ovoviviparous, and young develop inside their body before giving birth to live young. It is common for them to bear between 35 and 55 pups but have been known to have as many as 104. Because they bear so many pups, and the gestation is between 15 to 18 months, it is believed that they reproduce every three years.

Depredation: When a shark takes your fish

Depredation is when a fish has been hooked by a fisherman and is then attacked and eaten or partly eaten by another marine animal. This is obviously a problem for the fisherman because the fishermen cannot use the fish. According to Dr. William Driggers, Chief Scientist on the Oregon II Longline Shark and Snapper survey, depredation is on the increase in U.S. waters because shark populations are increasing. Shark populations are increasing because of good management of the shark populations. The most likely shark species to take a hooked fish is the whatever shark species is most common in that area. In other words, no one species is the worst offender. We have witnessed this at least six times on this survey leg.

A sandbar shark biting a red snapper on a fishing line at the surface of the ocean — A sandbar shark takes a bite out of a red snapper.

Caitlin, wearing fish gloves and a life vest, holds up only the front half of a red snapper. Just below the dorsal fin, ragged edges of the fish reveal a shark bite. Caitlin stands on the aft deck, and we can see obscured views of other crewmembers behind her, plus a cloudy sky. — Graduate student Caitlin Retzlaff shows the results of depredation.

Meet the Crew: Fisherman/Deckhand Josh Cooper

Josh is a professional fisherman aboard the Oregon II! Yup, one position on this crew is to be a professional fisherman.

The responsibilities of a fisherman are many. Everyone on the boat has very well defined duties and must be flexible and a good team member. He helps load the ship before it leaves the dock. He helps with docking by handling the lines. There are many duties once underway. There is painting and cleaning to be done, preparing gear and running the machinery used for fishing.

Then there is the fishing. Josh loves fishing. The fishermen are on board to help handle the big sharks and other large fish. Josh has done a lot of fishing. He sometimes operates the crane when the cradle is needed for a big shark. In emergency situations Josh is on the fire team and operates the small rescue boat that is aboard the Oregon II.

Josh running the crane to use the cradle.

Josh graduated from the University of Alabama, but a degree from a university is not required to be a fisherman/deckhand. After earning a dual major in biology and marine biology, he went to Alaska as a fisherman on commercial fishing vessels.

After that, he joined NOAA as a fisheries observer. In this job, he was on commercial fishing boats. He would be assigned to join a fishing boat, usually a small boat with two to three fishermen. It was his job to collect data on the fish caught. This would include species, length and weight. After doing this for two years in Alaska, he moved to do the same job in the Gulf of Mexico. Josh continued to do this work for six more years.

He first came to the Oregon II as a contractor working with Artificial Intelligence (AI) teaching the computers to recognize fish species. He was doing this when a position opened up as a part of the deck/fisherman crew. He has been on the Oregon II for two years. He likes that the accommodations are better than many of the other boats that he has lived on and he likes the people that he works with.

Being a fisherman is a big commitment. Josh says that he is out to sea about 140 days a year. When the ship is docked there are many maintenance tasks to be done.

Josh sits on a bench on the aft deck of NOAA Ship Oregon II. It's a bright, clear day. He's spreading his arms about as wide as they can go and smiling at the camera. A pair of yellow fish gloves rests on the bench beside him. — Josh telling a fish story. He was not exaggerating, by much.

Personal Log: Schedules

NOAA Clock

Life on the Oregon II is dictated by schedules, until it’s not. My basic schedule is dictated by my shift. I am on the day shift, which means that I work from noon until midnight. The night shift is midnight until noon. We use a 24 hour time schedule to avoid any confusion about which 8:00 or 10:30 we are referring to. So I am working from 12:00 – 0:00. During that time we might set and haul as many as three stations, or as few as one, so far.

Many factors might impact this schedule, including transit time between stations, as well as weather. I usually wake up some time between 7:00 and 8:00. Breakfast closes at 8:00 and I do like breakfast. On those mornings that I do not make it to breakfast, there is always fruit, cereal, and a variety of leftovers available. The rest of the morning I can use to exercise, write, read and relax. I like to enjoy a few minutes up on the flying bridge watching the ocean or observing a haul below. Lunch begins at 11:00 and I like to get in there fairly early to be sure that I am ready for my shift at 12:00. Our shift simply takes over where the last one left off. Sometimes we are in transit, but we might take over with the set or haul. We continue for the rest of the shift with the station schedule until midnight. Dinner is scheduled from 17:00 – 18:00. If we are not able to make it to the galley due to working, they will hold a dinner for us.

The ship operates and holds to schedules 24-7 unless there is a problem with the weather or mechanical problems. It has taken a while, but I have adjusted to this schedule and it feels pretty normal. Currently, we are taking shelter near shore to wait out a storm. We are expecting a 24 hour delay with no fishing stations.

A photo of just the moon - orange, but with some topography visible - against a completely black background — The Sturgeon Supermoon

One of the real treats is the natural beauty. The ocean is not just a repetitive body of water, but an everchanging montage of colors and shapes. Sometimes a light green, to deep blue at other times. At night, the blanket of black is broken by the white foam of the bow waves and whitecaps. There are dolphins, sea turtles, sea birds, not to mention all of the interesting creatures that come up on the longline. Sunsets never fail to disappoint, and then of course, the moonrises. We were lucky enough to be hauling in the longline when the Antares rocket was launched from Wallops Island, Virginia. We watched as the orange glow slowly receded into the clouds. Just a few minutes later, the Sturgeon Supermoon rose behind the clouds on the horizon. That was an incredible experience. There is always some new natural beauty to be found out here. Nature may be beautiful but it is not subject to our schedules.

Animals seen: spotted dolphins, laughing gulls, gag grouper, scamp grouper, oyster toadfish, bonita, great hammerhead, scalloped hammerhead, sucker fish

We had been watching these dolphins coming to the surface. This is the video we got when we retrieved the CTD.

oyster toadfish, photographed head-on, in a white plastic bin. — Oyster toadfish, watch out for those venomous spines.
Photo credit: John Brule

Did you know?

Have you ever had someone wish you “fair winds and following seas?” Josh explained this saying to me. While we were talking, the boat was rocking back and forth in 3-5 foot waves. Not a particularly smooth ride. He commented that, “It seems like we always find the trough.” I asked him what he meant. He explained that when waves are coming from one side or the other, this is said to be “in the trough.” The low point between waves is called the trough. The smoothest ride on a boat comes when the waves are coming from the stern, following the ship, so to speak. That would be the seas following the boat.

August 1, 2023August 2, 2023

Martin McClure: Starting the Survey, July 30, 2023

NOAA Teacher at Sea

Martin McClure

NOAA Ship Oregon II

July 25– August 9, 2023

Mission: Shark/Red Snapper Bottom Longline Survey

Geographic Area of Cruise: Gulf of Mexico/Atlantic Ocean

Date: July 30, 2023

Latitude: 31°21.967’N

Lonfitude: 80°12.135’W

Air Temperature: 27.5° C.

Wind Speed: 6.79 kph

Science and Technology Log: Longline Fishing

Teacher at Sea Stephen Kade created this graphic to help explain longline fishing.

We have started the longline survey and it is well organized and exciting. The first part of the process is called the set. We start the fishing process by baiting circle hooks. These hooks are attached to a 12 foot length of 3 mm line called a gangion (gan-jin). We use mackerel for bait. Each piece of fish is hooked through a circle hook.

Circle hooks ready for baiting

Next we drop over a buoy with a radar reflector on top called a hi flier. Attached to this is a 4 mm line called the main line. Then a weight is attached to the line and dropped. This anchors the beginning of the fishing line to the seafloor. Next, a numbered clip is attached to each gangion. The gangions are attached to the main line in order from 1- 50. A second weight is then attached to the main line and the process is repeated with gangions numbered 51- 100. A third weight is then attached to anchor this end of the line to the seafloor.

Tagging and attaching the gangions

Finally, a second hi flier buoy is attached and released to mark the end of the line. As each of these steps is done a member of the team records it on a computer. This gives a precise time that each baited hook went in the water as well as when and where the anchors and buoys were released.

Ready to drop the hi flyer

The next step is to take water measurements. This is done with a remarkable device called a CTD. CTD stands for conductivity, temperature and depth. Conductivity is related to how much salt is in the water (salinity) and is related to how well it will conduct electricity. It also measures the temperature and depth of the ocean at that spot. We attach a camera to it to see what the seafloor is made of at that spot. We want to know if it is a sandy bottom, sea grass, muddy, etc.

The CTD

Then we wait one hour.

The second part of the process is called the haul. The haul is simply the set done in reverse, except that we often catch fish. The fishermen use a grappling hook to retrieve the main line attached to the hi flier.

Grappling hook ready to thrown

When it is brought on board, the main line is attached to a winch. The winch is used to pull the main line up of the seafloor. As the main line is pulled in the gangions are detached and replaced in a barrel, the numbered clips are detached and kept on a line in number order. That way, everything is ready to be used for the next set. Whatever is on, or not on, the hook is recorded on the computer. If the bait is missing or damaged is noted.

Weighing a barracuda

Any fish caught is noted on the computer and the team jumps into action. For sharks there are several things that happen. They are identified by species. The hook is removed and the shark is weighed. It is then measured for three different lengths, precaudal (before the tail fin), fork (at the fork in the tail, and total (the end of the tail fin). The sex, male or female, and maturity is determined. Tissue samples are taken by cutting off a small piece of a fin. This tissue sample is placed in a small plastic vial and labeled. They are also often given a numbered tag. This information is all recorded and entered into the computer.

Me, tagging a sandbar shark.

Meet the Crew: Lieutenant James Freed

NOAA Corps Lieutenant James Freed is the operations officer for the Oregon II. He has many responsibilities as part of his job. Part of his job is to liaison, or maintain communication, between the science party and the ship’s commanding officer (CO). That means making sure that everything that the science team needs is on the ship. If the science team has needs then we would go through him and not directly to the CO. As Operations Officer he is also in charge of organizing materials when they come aboard the ship. He posts the Plan of the Day which lets everyone on board know what to expect that day. Lieutenant Freed coordinates port logistics for the ship. This means he coordinates the loading and unloading of materials. His duties also include acting as Officer of the Deck (OOD). During this 4 hour shift he is responsible for the ship’s navigation and safety. His emergency response assignments on the Oregon II include being the nozzleman on the fire team, launching life rafts for abandon ship and he goes out on the rescue boat for man overboard.
Lieutenant Freed grew up in Santa Rosa, California. He attended Santa Rosa Junior College and then transferred to University of California, Santa Cruz where he studied marine biology. During this time he worked as an intern on a fishing vessel and this is where he first heard about the NOAA Corps. He has now been in the NOAA Corps for 6 years. Before being assigned to the Oregon II he was first assigned to the NOAA Ship Bell M. Shimada in Newport, Oregon. He then moved to Seattle working with the Marine Mammal Laboratory at Alaska Fisheries Science Center. For this assignment his duties were quite varied. They included doing a lot of field work, flying drones, and doing whale biopsies.
Lieutenant Freed is clearly enthusiastic about his career in the NOAA Corps. He describes it as an “incredible career” that supports his growth with leadership and management training. The NOAA Corps is growing with new ships and aircraft and will need to recruit new members.. The ships participate in a wide variety of tasks including fisheries research, oceanographic and atmospheric data collection and hydrographic mapping.

Personal Log

Well these last few days have been quite a transition. After 2 1/2 days of transit from Pascagoula, MS to Miami. It was a bit shocking to see how the skyline has changed after 40+ years. It has grown, to say the least. We started fishing just north of Miami. The 10 person science team is split into two shifts. I am on the “day” shift. We work from noon to midnight. These long shifts are filled with alternating periods of activity and waiting. After the set we wait for an hour before the haul. Then, depending on where the next set is, there will be another wait of between two to three hours. The hauls seem to follow the same patterns. As the mile of line is reeled in, there are long periods with not much happening. Then, there might be three fish online within a few hooks. Last night it was two baby tiger sharks and a 1200 mm (3 ft. 11 in.) barracuda within about 5 minutes. When there is a shark too big to haul up by hand on the gangion, the crane is used. We all don hardhats, the crane is moved into place and everyone is busy taking measurements, preparing tags, and taking tissue samples. I was warned to bring a lot of reading material for the down time and I did that. However, with so many things to learn, interesting people to talk to, and beautiful scenery to watch, I have had little time for boredom to creep in.

Ready to release a baby tiger shark.

One of the most common questions that I had before I left concerned getting motion sick. Dare I utter the word… seasick. So far, I have been lucky… hmm, I can’t seem to find any wood around here to knock on. I started the voyage with what I consider to be a rational decision, take the Dramamine. We started with two days of beautiful weather. By the first sign of rough seas I had stopped taking the Dramamine so I went outside and watched the horizon for about an hour. I decided that watching the horizon on a beautiful day at sea had no drawbacks. I never did feel nauseaus. Some people recomended that I buy the accupressure bands which I did. When seas get rough and I am inside I will sometimes wear those. I have not been seasick, yet. I still take precautions like not doing computer work inside when in rough seas but so far I have been fine. In fact, as far as I know none of the volunteers or crew have been sick.

I cannot end this blog without acknowledging the stewards in the gally and the impressive menu available at each meal. I think that there are always three choices for a main dish and a variety of sides. Additonally, a salad bar is always available, snacks, and my favorite, ice cream.

Just one of three delicious options that night

Animals seen: sea turtle, dolphin, snake fish, spotted eel, barracuda, shark sucker. Sharks: sandbar shark, tiger shark, Atlantic sharpnose shark, scalloped hammerhead

shame faced crab

Did you know?

Most of the fish that we catch have parasites living in and on them?

July 28, 2023July 28, 2023

Martin McClure: Getting Acquainted, July 28, 2023

NOAA Teacher at Sea

Martin McClure

Aboard NOAA Ship Oregon II

July 25 – August 9, 2023

Mission: Shark/Snapper Long Line Survey

Geographic Area of Cruise: Gulf of Mexico/Atlantic Ocean

Date: Jul 28, 2023

Weather Data from the Bridge

Latitude: 25°49.441’N

Longitude: 79°59.970’W

Temperature: 30.5° Celcius

Wind Speed: 7 knots

The Oregon II at dock in Pascagoula, Mississippi.

Science and Technology Log

NOAA conducts the Shark/Snapper Longline Survey each year at the same time and place. It goes from July through September and surveys from Cape Hatteras, North Carolina, to West Palm Beach, FL, and the U.S. northern Gulf of Mexico from southwest Florida to Brownsville, TX. This is a longline survey and one mile of gear is baited and laid down for one hour.

When the line is reeled in, the science and fishing teams take them off the hooks and record data on the fish. The data gathered includes what species (kind of fish) are caught, if they are male or female, their age, weight and length. Additionally, the sharks will be tagged with a number and released.

The data collected will be used by NOAA to help manage the health of the fishery. It is one set of data that goes into deciding how many fish can be safely taken from the ocean each year. Without this information, fishermen might take too many fish to keep the population stable.

a view up at four flags flown on a line, one after the other. the top is a navy blue flag with a black square. the second has vertical bands of red, white, and blue. the third is diagonally split between a lower yellow right triangle and an upper red right triangle. the last has horizontal bands of yellow, navy, yellow. — The *Oregon II* call sign flags, WTDO

NOAA Ship Oregon II is the ship that is used to conduct this survey each year. It takes a lot of people working together to accomplish this. The crew of the Oregon II is made up of several teams. Everyone has a job as a part of the team to make sure everything works as needed.

The NOAA Corps are the officers on the ship. They are responsible for the overall operation of the ship and are in charge of navigation, steering and everyone’s safety. They work in shifts from the “bridge.”

The engineering team makes sure that everything is working properly. This includes the engines, electrical systems, fresh water and the all-important air conditioning.

The deck crew includes the professional fisherman who do boat maintenance, prepare fishing gear as well as handle the big fish.

There are two stewards who prepare our meals and keep the dining area clean. They keep us well fed with several choices available at each meal three times a day.

The electronics department has just one person who is responsible to make sure all of the technology is working properly. That is a very big responsibility on this ship.

Finally, there is the science team. That is where I fit in. There are four NOAA scientists and six volunteers. I am one of the volunteers. The other volunteers are all university students.

There are 29 people on board and everyone works on shifts. The ship operates 24 hours a day so all jobs must be done around the clock. Most teams have two shifts that each last for… you guessed it… twelve hours.

Personal Log

These first few days have been spent getting acquainted with the layout of the ship, learning the routines of life on the ocean and the people on the ship. The most striking feature is that there seems to be an incredible amount of equipment packed into such a small space. Everything a crew of 29 could need for three weeks, emergency equipment and replacement parts. Yet, in any one place, there is adequate room to move and work. I have a “stateroom” that I share with one other member of the science team. Each of us have a “rack” to sleep in, lockers and drawers for personal belongings as well as a fold out desk to work at. We also have a sink and mirror. All this in a room that is about 7’X10’.

view of Martin's stateroom. we see high sided bunk beds built into the wall, a sink and a cabinet, the edge of a desk and a desk chair, two backpacks. — stateroom with two berths

Rarely are we both in there but there is adequate room when that happens. The “passageways” are narrow and it takes coordination to pass another crewmember. The “mess” seats twelve people, at most, so we have to eat meals in shifts.

the mess, or dining area, of NOAA Ship Oregon II. there are two tables anchored to the floor by posts; each table has six swivel chairs anchored to the floor on posts, as at a diner. someone sits at one seat, facing away from the camera. there are two televisions mounted on the wall, one showing a baseball game. in the foreground is a small refrigerator with juices and tea. — NOAA Ship *Oregon II*‘s “mess” seats 12 people at most.

There are three bathrooms and two showers available for general use. Showers should be short to preserve water as well as to make it available for others to use. There are three different “gym” areas with equipment to work out in. My favorite is the flying bridge where you can look out over the ocean.

a view over the bow of NOAA Ship Oregon II, from high up. we can see the front mast, lines, part of a davit arm. the sky is blue, clear of clouds if a bit hazy on the horizon. the ocean is dark blue and calm. — view from the flying bridge of NOAA Ship *Oregon II*

Safety is a priority on board the ship. We start by using basic safety procedures while moving around the ship. While underway, the pitch (front to back motion) and roll (side to side motion) of the ship never stops. This becomes more or less pronounced depending on the weather. So moving through the passageways and doorways and especially on the outside decks, one must be careful to use a hand to keep their balance. The stairwells are narrow and steep but negotiable. When using stairwells always have 3 points of contact, that means use two hands and then a foot is the third point of contact.

view down a narrow metal staircase. equipment is stashed on the other side of a railing to the right of the photo. — view down a stairwell on NOAA Ship *Oregon II*

Moving around comes more easily with time. No open toed shoes are to be worn except on the way to and from the shower. Safety equipment must be worn when working. We will be wearing hard hats, gloves, glasses and a work vest. The work vest looks a lot like a personal flotation device but flat. If you fall overboard it will automatically inflate. There is a lot of equipment and devices all over the ship for use in emergency situations.

firefighting equipment mounted on an interior wall: an axe (labeled "Oregon II"), a crow bar, a folded up fire hose. a red plaque on the wall reads FIRE STATION NO. 4. — firefighting equipment in case of emergencies

Fire extinguishers, AEDs, masks for smoke, and, of course, life rafts. We have to do drills to make sure that we know what to do in emergencies.

four people stand on the aft deck "decked out" in firefighting gear. they wear yellow fireproof pants and jackets, heavy black and yellow boots, large yellow gloves, black or white helmets, gas masks, some sort of backpack. the sky is bright blue with some wispy clouds and the ocean is fairly calm. — our firefighting team

Martin stands on the aft deck in a heavy orange survival suit with his arms raised for the photo. it's only partially zipped, revealing his Teacher at Sea t-shirt underneath. He wears a Teacher at Sea hat and sunglasses. other survival suits and flotation devices rest on deck around him — That’s me in a “Gumby” suit for survival in case we have to abandon ship.

Did You Know?

Did you know that not all sharks reproduce the same way? Be sure to check future blogs to find out how.

Animals Seen Today:

the dorsal fin of a dolphin visible above water — dolphin

and also: masked booby, swallow, flying fish, barracuda.

July 10, 2023July 19, 2023

Lisa Carlson: One Fish, Two Fish, Rockfish, Hake fish! July 10, 2023

NOAA Teacher at Sea

Lisa Carlson

NOAA Ship Bell M. Shimada

July 5, 2023 – July 19, 2023

Mission: Fisheries: Pacific Hake Survey (More info here)

Geographic Region: Pacific Ocean, off the coast of California

Date: July 10, 2023

– – ⚓ – –

Weather Data from the bridge:

July 7 (1200 PT, 1500 EST)
Location: 36° 00.4’ N, 122° 05.9’ W
16nm (21mi) West of Big Sur, CA

Visibility: 10 nautical miles
Sky condition: Overcast
Wind: 20 knots from NW 330°
Barometer: 1013.1 mbar
Sea wave height: 3-4 feet
Swell: 6-7 ft from NW 320°
Sea temperature: 14.0°C (57.2°F)
Air temperature: 14.4°C (57.9°F)
Course Over Ground: (COG): 323°
Speed Over Ground (SOG): 10 knots

July 8 (1200 PT, 1500 EST)
Location: 36° 34.5’ N, 122° 05.3’ W
17nm (20mi) Southwest of Monterey, CA

Visibility: 10 nautical miles
Sky condition: Few clouds
Wind: 19 knots from NW 330°
Barometer: 1013.8 mbar
Sea wave height: 5-6 feet
Swell: 6-7 ft from NW 330°
Sea temperature: 14.0°C (57.2°F) 13.7
Air temperature: 14.4°C (57.9°F) 14.3
Course Over Ground: (COG): 089°
Speed Over Ground (SOG): 10 knots

July 9 (1200 PT, 1500 EST)
Location: 37° 06.8’ N, 123° 00.5’ W
30nm (35mi) West of Pigeon Point Light Station, Pescadero, CA

Visibility: 10 nautical miles
Sky condition: Overcast
Wind: 13 knots from NW 332°
Barometer: 1016.0 mbar
Sea wave height: 2-3 feet
Swell: 4-5 ft from NW 310° 4-5
Sea temperature: 14.3°C (57.7°F)
Air temperature: 15.2°C (59.4°F)
Course Over Ground: (COG): 093°
Speed Over Ground (SOG): 10 knots

July 10 (1200 PT, 1500 EST)
Location: 37° 26.7’ N, 123° 06.4’ W
32nm (37mi) West of Pescadero, CA

Visibility: 8 nautical miles
Sky condition: Overcast, fog in vicinity
Wind: 20 knots from NW 330°
Barometer: 1015.9 mbar
Sea wave height: 2-3 feet
Swell: 3-4 ft from NW 320°
Sea temperature: 14.5°C (58.1°F)
Air temperature: 13.6°C (56.5°F)
Course Over Ground: (COG): 314°
Speed Over Ground (SOG): 3 knots

– – ⚓ – –

Science and Technology Log

Lisa poses for a photo in the wet lab with a hake fish. She's wearing heavy-duty orange overalls and large orange gloves. With her right hand, she grasps the fish by its open mouth, and her left hand holds on to the tail. We can see metal tables and equipment in the background. — Me holding a Hake before sorting. After observation, we determined this was a developmentally mature female, measuring 50cm (20in) long!

In my July 6 blog post, I explained how NOAA Ship Bell M. Shimada is equipped to collect acoustic data in the form of echo grams. The acoustics team uses the data to determine if there are enough return signals to suggest fish are present and attempt a trawl. In this blog post, I will explain how we get the fish onboard, and what we do with the sample of marine life once it is collected from the net.

One question I had after learning about the acoustics and environmental DNA (eDNA) pieces of the survey mission was, “How does physically collecting and researching Hake samples fit into the puzzle of understanding their ecosystem and supporting sustainable fisheries?” (NOAA Fisheries quick facts and video here)

“While echosounders are useful, they do not provide certain quantitative data that researchers need to understand the ecology of these organisms and the midwater zone. To collect quantitative data, such as biomass, length and weight, and age class distributions, researchers must gather representational samples and take direct measurements of them. The best way to do this is by employing trawls.”
NOAA Ocean Exploration: “Trawls”

So, although acoustics and eDNA research is important to the overall survey, they are only pieces of the puzzle, and the puzzle is not complete without conducting trawls and physically researching samples. NOAA Ship Bell M. Shimada uses a midwater trawl net that is deployed from the stern over the transom, and towed behind the vessel. As the name suggests, midwater trawls occur in the middle section of the water column, versus surface and bottom trawls. The net is conical in shape and uses two metal Fishbuster Trawl Doors, and two sets of heavy chain links called Tom weights, in order to keep the trawl in the middle of the water column.

a simple and stylized monochrome illustration of a fishing vessel towing a midwater trawl behind it. The net in tow is conical, attached at four points to two bars that hold the opening apart, and these bars are attached to lines (ropes) extending back from the vessel. This net is capturing two fish and missing a third. — NOAA Fisheries: “Fishing Gear: Midwater Trawls”

“The midwater region is especially important because the creatures that inhabit it constitute the majority of the world’s seafood. Understanding the ecology of midwater organisms and their vast environment can provide us with better information to manage these important natural resources and prevent their overexploitation.”
NOAA Ocean Exploration: “Trawls”

Deck department assisting in recovering the trawl net after a successful deployment.

Two deck crewmembers work with an orange and white fishing net on the aft deck of NOAA Ship Bell M. Shimada. They are wearing foul weather gear, life vests, and hard hats. At right, one leans over the net, searching for remaining captured fish. The other approaches from the left, looking down at the net, to assist. We can see a cloud-capped mountain range in the distance beyond the water.

Once the net is onboard, the net is emptied one of two ways depending on the size of the sample. For large samples, marine life is deposited into a hopper and subsequent conveyor belt. For smaller samples, the Hake will be put into a large basket then divided into smaller baskets of approximately 100 Hake each. Any other marine life like Salps, Myctophids, Pyrosomes, Rockfish, King of the Salmon, and small bony fish, etc. are recorded in the database and returned to the ocean.

“The ship’s wet lab allows scientists to sort, weigh, measure and examine fish. The data is entered directly into the ship’s scientific computer network.”
NOAA Office of Marine and Aviation Operations (OMAO): “Bell M. Shimada”

a large black plastic bin filled with fish - mostly hake, but a few splitnose rockfish (eyes bulging from the pressure change) stand out for their red color. An orange-gloved hand reaches toward the basket from the upper left corner of the image.

Large basket containing a sample of Hake with a few (red) Splitnose Rockfish.

a view of NOAA Ship Bell M. Shimada’s Wet Lab with multiple scales, Ichtystick electronic measuring boards, trawl camera, vials for otolith (ear) bones, disposal chute, and tools including scalpels, tweezers, and knives. — NOAA Ship *Bell M. Shimada’s* Wet Lab with multiple scales, Ichtystick electronic measuring boards, trawl camera, vials for otolith (ear) bones, disposal chute, and tools including scalpels, tweezers, and knives.

Maddie, in the wet lab, holds a hake fish up for a photo. She is wearing a long-sleeved shirt, heavy-duty orange overalls, and large orange gloves. Her hair is tied back in two double braids and topped with a teal bandana. She holds the fish in two hands, horizontally, at the level of her mouth, so we cannot see her smiling, but we can see her arch her eyebrows as she looks straight at the camera. — NOAA Ship *Bell M. Shimada’s* Wet Lab with multiple scales, Ichtystick electronic measuring boards, trawl camera, vials for otolith (ear) bones, disposal chute, and tools including scalpels, tweezers, and knives.

With our boots and bright orange rubber pants and gloves on, our first task is to distribute the sample of Hake into baskets of about 100 each. Based on how many baskets we fill, a random selection of baskets will be kept, and the others will be returned to the ocean. With the remaining groups of Hake, we determine their sex and length.

In order to do this, we use a scalpel to make an incision on the underside/belly of the Hake. Once open, we are able to examine their organs, including the gonads to determine if the fish is male or female, and if they are developmentally immature or mature. Young Hake are difficult to sex, and it takes practice to get over any initial fears of cutting into an animal; let alone being able to locate and identify the gonads. Hake usually spawn in early winter, so many of the smaller Hake we sample from during the summer are age one or younger.

Our largest Hake thus far was a developmentally mature female, measuring 50cm (20in). In order to accurately and consistently measure the length of the sample, we use a waterproof, magnetic plastic board with metric (centimeter and millimeter) markings called an Ichthystick (think: high-tech meter stick). The fish is placed on the board with its mouth touching the black board at 0cm, then a magnetic stylus is placed at the fork of the fish’s tail. Once the magnetic stylus is placed on the board, the length to the nearest millimeter is displayed on the LCD screen and automatically entered into the database program. The length data is grouped with the date, time, and identified sex for later observation and comparison.

Additional information, abstracts and outline about Ichthystick here

Ichthystick’s LCD display, motherboard, magnetic board, and magnetic stylus. Digital scale in background.

An even smaller subgroup is then selected and examined to record weights of individual Hake, collect ear bones called Otoliths for aging, stomach samples for diet, liver for RNA, and ovaries for maturity development. Otolith bones help determine the age of the Hake because they grow a new “layer” of bone each year, similar to coral structures and annual tree rings. Organs and bones removed from the Hake are sent to NOAA Fisheries centers for analysis and included in databases with the date, identified sex, length, weight, and location in which they were collected.

This data is used to build more of the puzzle, along with acoustical information, water samples, and eDNA data in order to further understand the ecosystem, biomass, diet, and

“support sustainable populations of Pacific hake on the West Coast.” (…)
“It provides vital data to help manage the migratory coastal stock of Pacific hake. The hake survey, officially called the Joint U.S.-Canada Integrated Ecosystem and Pacific Hake Acoustic Trawl Survey, occurs every odd-numbered year.”
NOAA Fisheries: “Joint U.S.-Canada Integrated Ecosystem and Pacific Hake Acoustic Trawl Survey”

– – ⚓ – –

Personal Log

Although this subtopic of explaining the Integrated Ecosystem and Pacific Hake Acoustic Trawl Survey is a bit easier to understand than my July 6 Acoustics Lab post, it certainly does not mean it’s an easy task!

When I had a tour on July 4, I remarked how clean and organized the Wet Lab is. I hadn’t see it in action yet, but noticed how everything had its place and use. On July 6 we conducted our first trawl and collected a sample of 11 baskets of Hake (approximately 1,100 Hake since we group about 100 Hake together in each basket.) From that sample, we kept four baskets and counted, sexed, and measured 541 Hake.

Five of us were working together in the Wet Lab for that haul. I’ll admit I probably didn’t sex 100+ Hake. It took a few minutes of watching the others carefully and swiftly cut into the underside of a fish, open the two sides, and know what to look for to determine the sex of very young Hake. Eventually I found the courage to slice in and take a look. By the fourth or fifth Hake, the uneasiness had subsided and I found the process very interesting and educational. Although young samples are hard to sex as they are often undeveloped, the others encouraged me and answered my questions and guesses with enthusiasm and support.

While working on measuring the lengths of our samples, one Science Team member paused and remarked how beautiful he found the fish. Although they do not have vibrant, bold colors, shimmering scales, or anything else particularly remarkable, he found the beauty in them. He digressed into a conversation of their role in the ecosystem, how they are living and breathing creatures, and how they probably all have their own personalities and slight physical differences. I noticed some of their eyes were shiny and sparkling, and how their faces and expressions were noticeably unique the more you looked. That “down to earth”, heartfelt discussion was very special and demonstrated how the crew respects the process of catching and sampling Hake, while keeping each other and marine mammals safe.

From the NOAA Corps Officers, to the deck department, to the engineers, electronics, science team, survey team, galley crew, volunteers, and everyone in between; the crew on NOAA Ship Bell M. Shimada is special. They take pride in their vessel and job, and always seem to have a smile and kind greeting. Being away from land and loved ones for weeks and months at a time will certainly take a toll on the body and mind, but this team is there for each other. To all of the crew, thank you for making me feel so welcomed and appreciated. We’re almost halfway through the mission, and as tired as I may get after (sometimes) 12+ hour days, I sleep well knowing the crew trusts their vessel and each other; and look forward to learning and becoming more and more acquainted each day with the people that make this mission possible. Thank you!

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Did You Know? (FAQs)

1. Are you finding schools of them?

We’ve had seven successful trawls out of nine attempts for Pacific Hake fish. They often come with pyrosomes (Sea Pickle) myctophids (Lanternfish), and salps in the net too. Some trawl attempts are successful without a hitch, but more often than not we have to restart our Marine Mammal watches a few times before deploying in order to keep our ocean life safe and not get tangled in the net. Two trawl attempts have been abandoned because of the amount of persistent marine mammal life and playfulness near the ship. (I think they know we’re watching and show off for our cameras.)

2. What’s your average depth?

The transects (Set and numbered longitudinal east-west lines NOAA Ship Bell M. Shimada navigates on while collecting acoustic data) usually range from 50m – 1,500m (164ft – 4,921ft) in depth.

However, right now one of the displays in the Acoustics Lab, the depth reading is 3,240m which is about 10,630ft or just over two miles deep!
This depth is only 1,870ft shallower than the wreck of the RMS Titanic!
(We were on a long transect, we do not often see depths this great.)

3. Have you gotten seasick? Seasickness should subside after about 3 days.

I’ve never gotten seasick thankfully! Knock on wood and all the other premonitions, please.

4. What is the Hake role in the ecosystem?

More info on this coming in later posts after explaining our Chemistry lab and technology aboard!

However, as predators, they can be cannibalistic towards their own kind.
As far as their role in human consumption: They are often used as a substitute for Cod and Haddock, and in fish sticks and imitation crab meat.

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Animals seen July 5-July 10:

Mammals: Sea Lions, Harbor Seals, Dall’s Porpoise, Risso’s Dolphins, Pacific White-Sided Dolphins, Northern Right Whale Dolphins, Humpback Whales

Birds: Gulls, Black-Footed Albatross

Bony Fish: Hake, Lanternfish (Myctophid), Flatfish, King of the Salmon, Split Nose Rockfish, Chili Pepper Rockfish

Other Marine Life: Giant or Humboldt Squid (15 foot tentacles in trawl), Spiny Dogfish Shark, Shrimp, Plankton, Krill, Sea Pickle (Pyrosome), Salp, Eel Larva

a spiny dogfish - a species of small shark - placed on a fish measuring board atop a metal table. a scale is visible next to the measuring board. — Spiny Dogfish Shark (42cm or 16in long)

three impressively long squid tentacles laid out on the floor; they are orange-brown on top, and white underneath, lined with white suckers (suction cups) of varying size — Spiny Dogfish Shark (42cm or 16in long)

August 23, 2022August 24, 2022

Michael Gutiérrez Santiago: Newport Hydrographic Line, August 18, 2022

Lea esta publicación en español: Michael Gutiérrez Santiago: Línea Hidrográfica de Newport, 18 de agosto de 2022

NOAA Teacher at Sea

Michael Gutiérrez Santiago

NOAA Ship Bell M. Shimada

August 12 – August 25, 2022

Mission: Pacific Hake Survey

Geographic Area of Cruise: Coasts of Washington and Oregon

Date: August 18, 2022

Weather conditions from the bridge:

Latitude: 4539.9725N
Longitude: 12422.9606W
Temperature: 63°F
Wind Speed: 13 mph
Barometer: 1017.2mb

Michael poses for a photo to show off his gear: orange Grundens (rubber overalls) over a black sweatshirt, an orange life vest, a yellow hard hat, and sunglasses. — Ready for plankton sampling!

Science and Technology Log

Newport Hydrographic Line

One way scientists assess the health of our ocean’s ecosystems is to take samples of zooplankton and ichthyoplankton (fish eggs and larvae), both on the surface of the water and at depth. Observations of these plankton can inform us greatly about productivity at the bottom of the food chain, spawning location and stock size of adults, dispersal of larval fish and crabs to and away from nursery areas, and transport of ocean currents.

The Newport Hydrographic (Newport Line) is an oceanographic research survey conducted by NOAA’s Northwest Fisheries Science Center and Oregon State University scientists in the coastal waters off Newport, Oregon.

Researchers have collected physical, chemical, and biological oceanographic metrics along the Newport Line every two weeks for over 20 years. This twenty-plus year dataset helps us to understand the connections between changes in ocean-climate and ecosystem structure and function in the California Current.

Data from the Newport Line are distilled into ocean ecosystem indicators, used to characterize the habitat and survival of juvenile salmonids, and which have also shown promise for other stocks such as sablefish, rockfish, and sardine. These data also provide critical ecosystem information on emerging issues such as marine heatwaves, ocean acidification, hypoxia, and harmful algal blooms.

a map of the coast of Washington and Oregon. the land is shaded gray, while the water includes a few blue lines indicating underwater topography. Though there are not grid lines, labels mark the latitude lines from 43 degrees North to 47 degrees North and the longitude lines from 125 degrees West to 123 degrees West. Midway, between 44 and 45 degrees North, a short red line extends horizontally out from Newport to the 125th meridian. It's labeled "NH Line" — Newport line

Barometer of ocean acidification and hypoxia in a changing climate

Global climate models suggest future changes in coastal upwelling will lead to increased incidence of hypoxia and further exacerbate the effects of ocean acidification. The Newport Line time-series provides a baseline of biogeochemical parameters, such as Aragonite saturation state—an indicator of acidic conditions. Researchers can compare this baseline against possible future changes in the abundance of organisms (e.g., pteropods, copepods and krill) sensitive to ocean acidification and hypoxia.

Equipment used

Vertical/half meter net
Getting the vertical net in the water
Vertical net deployed vertically in the water from a research vessel

A vertical net is a ring net with a small mesh width and a long funnel shape. At the end, the net is closed off with a cylinder (cod-end) that collects the plankton. It is deployed vertically in the water from a research vessel. It is mostly used to investigate the vertical/diagonal stratification of plankton. This allows the abundance and distribution of mesozooplankton to be determined.

Bongo net
Washing the sample down the bongo net
A bongo net is drawn horizontally through the water column by a research vessel

A bongo net consists of two plankton nets mounted next to each other. These plankton nets are ring nets with a small mesh width and a long funnel shape. Both nets are enclosed by a cod-end that is used for collecting plankton. The bongo net is pulled horizontally through the water column by a research vessel. Using a bongo net, a scientist can work with two different mesh widths simultaneously.

Assisting Toby with Isaacs-Kidd net
Isaacs-Kidd midwater trawl
Isaacs-Kidd midwater trawl dimension

Isaacs-Kidd midwater trawl collects bathypelagic biological specimens larger than those taken by standard plankton nets. The trawl consists of the specifically designed net attached to a wide, V-shaped, rigid diving vane. The vane keeps the mouth of the net open and exerts a depressing force, maintaining the trawl at depth for extended periods at towing speeds up to 5 knots. The inlet opening is unobstructed by the towing cable.

What we got?

a close-up view of a hand holding a clear jar with a white lid. This jar contains the sample collected by the vertical net. Since this net targets plankton, the sample mostly looks like cloudy, yellowish water. — Samples from vertical net

a close-up view of the contents of a white container, perhaps a bucket. This contains the sample collected from the bongo net. It's a soupy mixture of plankton, zooplankton, krill, and at least one small fish. — Samples from vertical net

Isaacs-Kidd sample
Krill from the Isaacs-Kidd

Personal Log

SHARK ATTACK!

That’s right, our underway CTD was attacked by a shark.

a view through a metal rigging of a pully with a cable extending down to the ocean's surface. there is no longer anything attached to the cable. — R.I.P.

On a bright and sunny day, the science team decided to launch the underway CTD, but things didn’t go as planned! Retrieving the uCTD back to the ship we saw a big dorsal fin zigzagging close to the uCTD, until we noticed that the uCTD was no longer attached to the line, therefore we had no choice that to cancel the uCTD. You should have seen all of our faces; we couldn’t believe what we saw. We think it could have been a:

a stock image of a white shark swimming underwater. — White shark

a stock image of a salmon shark swimming underwater. — White shark

view of a hand holding an underwater conductivity, temperature, and depth (uCTD) profiler. in the background is a painting on a cabinet door of a white ship sailing through waves and somewhat fantastical deep sea creatures swimming below. — underway CTD
(what the shark ate)

CTD stands for conductivity (salinity), temperature, and depth and it enables researchers to collect temperature and salinity profiles of the upper ocean at underway speeds, to depths of up to 500 m. Ocean explorers often use CTD measurements to detect evidence of volcanoes, hydrothermal vents, and other deep-sea features that cause changes to the physical and chemical properties of seawater.

Sunset on the Pacific Ocean, as seen from an upper deck of NOAA Ship Bell M. Shimada. The trawl net frame, davits, and other equipment on the fantail are visible in silhouette. — Sunset on board