Annmarie Babicki, August 10, 2010

Time:NOAA Teacher at Sea: Annmarie Babicki

NOAA Ship Name: Oregon II
Mission: Shark and Red Snapper Bottom Longlining
Geographical area of cruise: Gulf of Mexico
Date: August 10, 2010

Weather Data

Latitude:  25.36 degrees North
Longitude:  82.56 degrees West
Clouds: Overcast and occasional showers
Winds:  11.5 kts
Temperature: 28.6 Celcius or about 84 degrees Fahrenheit
Barometric Pressure; 1010.04

Science and Technology:

  I am working here in the Gulf of Mexico with a scientist who is completing shark stock assessments.  It is a long term study, which monitors population trends of all shark species in the Gulf.  The data collected from this survey is used in conjunction with data from many other studies to determine fisheries policy. One example of this could be the determinations of how large a catch can be and how long the catch season can be.  Policies are not only different by species, but also by whether the catch is for recreational or commercial use.
Today we began the shark survey and completed locations off the coast of Florida.  The locations are chosen at random, so that the data is objective and the findings are not skewed.  During each sampling the following information is recorded: shark species, its length, weight, sex, and the stage of its maturity.  The coordinates for each survey are also recorded, which enables scientists to know where particular shark populations exist. The number of stations completed per day varies depending on how far the stations are from one another.  Generally, the amount of time it takes to complete it is approximately two hours.
Bait bucket
Hi-flyer being dropped in the water

The methodology used to collect data on sharks is called bottom longlining.  This is when each hook are baited with mackerel and put on a gangion. We cut our own bait and attach it to the hooks.  Each hook is assigned a number, one to one hundred, so that it can be tracked. That line is then systematically hooked onto another line that runs one nautical mile.  Both ends of the line have what are called hi-flyers that float vertically in the water.  They are bright orange and have a blinking light on the top, so that they can be seen from a distance. There is a weight placed on both ends of the line and one in the middle. The weights help to keep the baited lines well below the surface.  After the last gangion is put on, we wait one hour and then begin to pull in all hundred lines. During this entire process the ship is moving, which can be sometimes challenging, especially in bad weather.

Measuring the length of a barracuda
weighing a barracuda
A tagged tiger shark

Although the focus of this survey is sharks, data is collected on all fishes that are captured. After the fish are pulled up on deck, data is collected and recorded by the hook number. The handling of sharks is different from the handling of fish.  Only sharks are fitted with a tag, which does not hurt them.  There are two types of tags, but to date we have only used one type.  In order to attach the yellow tag, a small slit is made underneath the dorsal fin. The tag has a sharp point on one end, which is inserted into the slit.  Also a small sample (5-10 cm) of the shark’s pelvic fin is taken.  This is then taken to the lab where DNA testing is done.  The DNA can be used to verify known species and unknown or new species. Also, scientists can compare the population of sharks in other oceans around the globe by their DNA. What I have observed on every catch is that the scientist carefully monitors the shark to ensure it is not being stressed or could be hurt in any way.
Today we caught this beautiful and powerful scalloped hammerhead shark.  When very large sharks like the hammerhead are caught, they are not pulled up by the line because it can damage them and they are too heavy to handle.  Instead they are guided onto a cradle which sits in the water. Once on securely they are hoisted to the side of the ship where scientists can collect the needed data. The hammerhead weighed in at 341lb. and was 8 feet long. What a catch this was, everyone was very excited.

Scalloped Hammerhead Shark
The cradle used to raise sharks in and out of the water.

Personal Log

The day started out cloudy but eventually turned over to showers and then to a hard rain.  We are feeling the effects of the tropical depression, which explains why it is difficult for me to stay standing for any length of time.  I am hitting and seeing more walls than I care to!  Also, it is a very bizarre feeling when the chair you are sitting in moves from one side of the room to the other.  Luckily I have fended of sea sickness, but I did have a mild case of nausea, however, nothing that stopped me from continuing to work on deck.  Thank goodness for Bonine.
Sleeping has not been much of a problem for me except when the ship’s engine changes.  The engines make a deep loud growling sound that wakes me for just a few minutes. Being out in the fresh air does make me tired, so I have to set my alarm clock or I will sleep through my next shift. It’s hard to know what day it is because I am working a noon to midnight shift. You keep track of time by when the next sampling is due.

Being at sea and doing this type of research is definitely only for the hearty.  The weather changes often as does the pace of the work.  There are many jobs to do during sampling and I am trying to learn all of them.  Baiting a hook and taking off bait has been frustrating, particularly since it has to be done quickly.  The type of hook they use has a barb on it that goes in a different direction from the rest of the hook, so it doesn’t just slide out.  We wear special gloves to protect our hands from the hooks and skin of the sharks, which can feel like sand paper or razor blades depending on the shark.  They say that practice makes perfect. Well, I have a lot of practicing to do!
My next adventure is to learn how to hold sharks and not be afraid of them.  I’ll keep you posted.

“Answer to Question of the Day” The fin clip is an actual piece of a fin that has been cut off the shark to be used for DNA testing.”Question of the Day”  What is a wet and dry room on a research vessel?

“Animals Seen Today” red groupers, tiger sharks, sandbar sharks, scalloped hammerhead, sharpnose shark, and sea birds

Beth Spear, August 4, 2010

NOAA Teacher at Sea: Beth A Spear
NOAA Ship: Delaware II

Mission: Shark – Red Snapper Bottom Long Line Survey
Geographical area of cruise: Gulf of Mexico to North Atlantic
Date: Wednesday, August 4, 2010

Night Watch

Weather Data from the Bridge
Time: 0200 (2:00 am)
Position: Latitude 29 degrees 28’N, Longitude 080 degrees 21’W
Present Weather: Partly Cloudy
Visibility: 10 nautical miles
Wind Speed: 8 knots
Wave Height: 1 foot
Sea Water Temp: 30.2 degrees C
Air Temperature: Dry bulb = 28.2 degrees C; Wet bulb = 26.0 degrees C
Barometric Pressure: 1016.8 mb
View off the stern off the NOAA Delaware II
View off the stern off the NOAA Delaware II

Science and Technology Log
This NOAA cruise was conducted for Red Snapper and sharks. Sampling is conducted along the continental shelf with a bottom longline. The longline consists of a mainline that is about 1 nautical mile or 6000 feet. Gangions are clamped to the main line approximately every 60 feet. The gangions have a clamp at one end and a hook baited with Atlantic Mackerel at the other end. The mainline is weighted at both ends and in the middle to keep it near the bottom. The line is set at depths ranging from 5 – 30 fathoms or 30 – 100 fathoms. The long term objective of the study is to estimate abundance of certain fish species. (mention annual survey, temporal patterns) Some short term objectives include sampling for genetic studies and tagging to study movement, age, and growth. Species studied usually include red snapper, tile fish, grouper, and various sharks.

The longline being sent out.
The longline being sent out.
Personal Log
Yesterday I began my night watch duties. Getting up at midnight is pretty tough especially when my normal bedtime is around 11:00 PM. One benefit however is the cooler early morning hours. We have about 4 -5 hot sunny hours before the night watch ends at noon. There is some down time while steaming to the next line. But when we are busy it can get crazy, especially working around animals with teeth that like to flip around. NOAA is very safety conscious and we all wear personal flotation devices (PFDs), safety glasses, and hard hats. The first night we had the mainline snap while hauling in the catch. No one was hurt, but that’s what the safety gear is for. It’ll be a good reminder for my students to wear their safety gear during labs.
Animals Seen So Far
Blue fish
Brittle star (see photo below)
Mahi Mahi
Flying fish
Scalloped hammerhead shark
Atlantic sharpnose shark
Blacknose shark
Eel
Sandbar shark
Bat?
Brittle star
Brittle star

Kimberly Lewis, July 12, 2010

NOAA Teacher at Sea Kimberly Lewis
NOAA Ship: Oregon II
July 1 -July  16 2010

Mission: SEAMAP Summer Groundfish Survey
Geographical Area of Cruise: Gulf of Mexico
Date: Sunday, July 19, 2010

National Seafood Inspection Lab

doors up
doors up

Weather Data from the Bridge
Time: 0730 (7:30 am)
Position: Latitude 28.18.6 N; Longitude 95.19.4 W
Present Weather: party cloudy
Visibility: 10 nautical miles
Wind Speed: 12.35 knots
Wave Height: 2 feet
Sea Water Temp: 28.9 C
Air Temperature: Dry bulb = 29.1 degrees Celsius; Wet bulb = 25.4 C
Barometric Pressure: 1014.30 mb

Science and Technology Log

What is science technology? One simple definition can be ‘tools to help humans do science’. We have talked about some of the tools used aboard the Oregon II, like FSCS and CTD, but what are some other tools used that are not high tech?
Believe it or not, a shovel is an important tool on the ground fish survey. When a catch comes in, the net hovers over empty baskets and the catch is slowly released to fill the baskets. Once all of the catch has been emptied from the net, shovels are used to pick up the rest of the catch from the deck that fell out during emptying. In the wet lab we use scrappers to move the catch along the tray where we sort the organisms. When it comes to identification paperback field guides and laminated posters can help with ID.

So what do we do with the organisms we collect data on and identify?
It was mentioned that the SEAMAP survey collects data for many different agencies, but during the data collection we also save specimens for scientist from universities and other research groups. If a scientist is doing research on a particular species of batfish for example, once we collect data on the batfish we print a label for that scientist, bag the fish in zip loc baggies, and then put the specimens in the freezer below deck.

Station Board
Station Board

Station board – stations with a star beside them are NSIL stations. Stations with a “B” are stations where we drop the bongo nets (mentioned in an earlier log).

For commercial seafood we bag specimens to go to NSIL (National Seafood Inspection Lab). Not every station we drop the nets for is a NSIL station, but when we do have a NSIL station we follow a similar sample saving protocol to the one used for research scientists. These samples get labeled, placed in zip-loc baggies, and then they’re sent on to the freezer. However, because of the Deep Water Horizon oil spill in the gulf, the way we saved some of the samples for NSIL was different, because these samples are going to be sensory tested. In other words ‘sniff’ tested. For this test, the specimens had to be wrapped in foil to help contain any scents so that the ‘sniff testers’ (people trained to pick up petroleum scent at an amazing 100 ppm) can identify if petroleum products are present. For leg II the focus is on chemical sampling for petroleum. However, protocols can change daily when you are sampling during a disaster.

Foiling
Wrapping brown ship in foil to go to NSIL

Packed for NSIL
Packed for NSIL

Wrapped in foil, tagged, and ready for the freezer.

A few days ago our new protocol called for storing NSIL samples first to ensure we have enough freezer space, then other requesters samples may be saved if time permits.

Here is a CNN video clip about seafood safety.

We have a long list of the scientific names of seafood that need to be collected for NSIL but here is a list of more popular common names of seafood that you may recognize.

Some Common Commercial seafood for the Gulf Region for our groundfish survey 5-60 fathoms: Brown, White, and Pink Shrimp, Red Snapper, Gray triggerfish, crevalle jack, sand seatrout, silver seatrout, yellowedge grouper, snowy grouper, lane snapper, butterfish, wenchman, cobia, vermillion snapper, amberjack, shoal flounder, dusky flounder, and swimming crab.

Snapper on deck
Snapper on deck

Red Snapper freshly caught

Red Snapper in a fish taco, mmmm.

Personal Log:

Well the seas have been calm which is allowing me to get in a good 8-9 hrs of sleep each day. That is much better than the rockin’ and rollin’ I had been experiencing in bed. It is hard to sleep when you are sliding a few inches from head to foot of the bed, and side to side. It also creates an uneasy stomach as all of your stomach contents get mixed around.

Yesterday was a beautiful day as we could see for 10 miles (as mentioned above). One thing about night shift is that we only have 5 hours of daylight. This can be good or bad. Good part is that we have a cooler working environment and I don’t need as much sunscreen. (But believe me we still get stinky from all of the shrimp and fish juice!). The bad part about night shift is we can’t see into the sea as well. So 12 hours of collecting organisms we probably miss a lot of the other interesting things that are swimming near our boat when we haul up a catch.

4 days of fishing to go, then we will be cleaning the lab and heading to Mississippi.

Bruce Taterka, July 7, 2010

NOAA Teacher at Sea: Bruce Taterka
NOAA Ship: Oregon II

Mission: SEAMAP Summer Groundfish Survey
Geographical Area of Cruise: Gulf of Mexico
Date: Wednesday, July 7, 2010

Trawling in Deeper Waters

Weather Data from the Bridge

Time: 2015 (8:15pm)
Position: Latitude = 27.20.39 N; Longitude = 096.35.21 W
Present Weather: Could cover 90%
Visibility: 4-6 nautical miles
Wind Speed: 15 knots
Wave Height: 2-4 feet
Sea Water Temp: 28.6 C
Air Temperature: Dry bulb = 28.5 C; Wet bulb = 26.7 C
Barometric Pressure: 1008.27 mb

Science and Technology Log

Since setting out on Friday we’ve headed south along the Gulf coast of Texas almost to the Mexican border, and now we’re heading back north but farther offshore, in deeper water. As a result our trawls are pulling up a deep-water assemblage of species different from those we saw in shallower waters a few days ago. There is still no sign of oil in this part of the Gulf, but we’re still taking samples of fish and shrimp for analysis to make sure there’s no contamination here from the BP-Deepwater Horizon oil spill.

Ten-foot seas are predicted for tonight so we’re heading north along the Texas coast, away from the storm, and we’ve put away the fishing gear until it gets calmer.

Last log we talked about FSCS (Fisheries Scientific Computer System). So what is it, how is it used, and what is so great about it?

FSCS, pronounced ‘fiscus’, is an automated system for recording the massive amount of biological and oceanographic data generated 24 hours a day by NOAA scientists during fisheries surveys. During a trawl survey, fish and invertebrates from each haul are sorted, counted and weighed by species. Scientists record data from individual fish, such as sex, weight, length and even stomach contents, resulting in tens of thousands of new data points every day. Before NOAA rolled out FSCS in 2001 aboard the ship Albatross IV, scientists recorded all data by hand, an incredibly tedious process. With FSCS, however, data are recorded digitally which is much faster, allows integration of biological and oceanographic data. It also enables NOAA to obtain critical real-time information to assess and manage the health of the marine ecosystem and individual fish stocks.

FSCS uses a Limnoterra FMB4 (fish measuring board) which has a magnetic pen to upload the length of an organism within a millimeter, and software that annotates all of the data on length, mass, sex, etc. The software has an index of species scientific names and can print labels for specimen samples that are to be shipped to other scientists and to the National Seafood Inspection Laboratory in Pascagoula, MS.

We use FSCS 24 hours a day, and I can’t imagine how NOAA scientists did this work without it.


Personal Log

I’m enjoying my 12-hour shifts processing fish, shrimp and invertebrates on theOregon II. Our noon-to-midnight watch is working well together and starting to bond.

My watch-mates in the Oregon II wet lab.

I’m seeing lots of very cool marine life that we’re hauling up from the bottom of the Gulf with our trawling net. Here are just a few of the things I’ve seen in the past two days:

Singlespot frogfish – Antennarius radiosus.

Note the lure on its snout.

Examining the stomach contents of a catfish.
Red snapper – Lutjanus campechanus.
Camouflage in the Sargassum. Can you spot the crabs?
Sunset
Sunset


Kimberly Lewis, July 5, 2010

NOAA Teacher at Sea Kimberly Lewis
NOAA Ship: Oregon II
July 1 -July  16 2010

Mission: SEAMAP Summer Groundfish Survey
Geographical Area of Cruise: Gulf of Mexico
Date: Sunday, July 5, 2010

Weather Data from the Bridge 
Time: 1000 hours (10:00am)
Position: Latitude = 27.58.38 N; Longitude = 096.17.53 W
Present Weather: partly cloudy, haze on the horizon
Visibility: 8-10 nautical miles
Wind Speed: 17 knots
Wave Height: 2-4 feet
Sea Water Temp: 28.6 C
Air Temperature: Dry bulb = 29.2 degrees Celsius; Wet bulb = 26.1 C
Barometric Pressure: 1011.1 mb

Science and Technology Log

The purpose of the SEAMAP Summer Groundfish Survey is to collect data for managing commercial fisheries in the Gulf of Mexico. SEAMAP stands for Southeast Area Monitoring and Assessment Program.

Right now we’re working along the Gulf Coast of Texas, far from the BP Deepwater Horizon oil spill, so we’re not seeing any effects of oil here. However, part of our mission is to collect fish for testing to make sure that oil spill has not impacted the marine life in this area and that the fish and shrimp from Texas are safe to eat. We’re also collecting water samples from this area to use as baseline data for the long-term monitoring of the impact of the oil spill in Gulf.

There are four main ways the Oregon II is gathering SEAMAP data on this cruise, and we’ve already learned how to use all of them. The main way we collect data is by trawling, and this is where we do most of our work on the Oregon II. In trawling, we drag a 42’ net along the bottom for 30 minutes, haul it up, and weigh the catch. We then sort the haul which involves pulling out all of the shrimp and red snapper, which are the most commercially important species, and taking random samples of the rest. Then we count each species in the sample and record weights and measurements in a computer database called FSCS (Fisheries Scientific Computer System).

Here on the Texas coast, where we’re working now, the SEAMAP data is used to protect the shrimp population and make sure that it’s sustained into the future. Since 1959, Texas has been closing the shrimp fishery seasonally to allow the population to reproduce and grow. The SEAMAP data allows Texas to determine the length of the season and size limits for each species. Judging by our trawls, the Texas shrimp population is healthy.

Here I am flushing out the CTD to prepare for the next use.

Another method of data collection is the CTD, which stands for Conductivity, Temperature, and Depth. The CTD takes measurements from the surface to the bottom, creating a CTD profile of the water column at our trawling locations. These data are important to assess the extent of the hypoxic “dead zone” in the Gulf of Mexico, and to relate the characteristics of our trawling hauls to DO levels. SEAMAP data collected since the early 1980s show that the zone of hypoxia in the Gulf has been spreading, causing populations to decline in hypoxic areas.

We also use Bongos and Neustons to gather data on larval fish, especially Bluefin Tuna, Mackerel, Gray Triggerfish, and Red Snapper. The Neuston is a rectangular net that we drag along the surface for ten minutes to collect surface-dwelling larval fish that inhabit Sargassum, a type of seaweed that floats at the surface and provides critical habitat for small fish and other organisms. We drag the Bongos below the surface to collect ichthyoplankton, which are the tiny larvae of fish just after they hatch. The Neuston and Bongo data on fish larvae are used for long-term planning to maintain these important food species and keep fish stocks healthy.

In this photo I am untying the knots at the bottom of the Neuston to gather the ‘catch’. You can see a lot of Sargassum in this haul.
In this photo I am untying the knots at the bottom of the Neuston to gather the ‘catch’. You can see a lot of Sargassum in this haul.

Personal Log

Day 1: docked
Day 2: we left the port in Galveston (July 2). My shift started immediately but by the time we actually left port and reached the first station my shift was over 1200 noon. So far so good!

Day 3: 2400 hrs or Day 4: 00:00 hrs.
– the sea sickness is getting me a little now. The rough seas are most likely the main culprit, however, I have not been out to sea for this period of time before. Once the seas calm down I should have a better idea. I do know this, my shift leader Alonzo and the chief scientist Andre have both been very understanding of my adjustment to sea life. The entire staff on board for that matter are very understanding and concerned for everyone’s well being.
– This was my first full shift. We are BUSY aboard the Oregon II ! A catch will come in for processing, which I will explain processing on my next blog, and we sometimes are still processing the last batch or we are up front taking CTD samples and bringing in our bongos/neustrons. I have learned a lot of things in a short period of time.

July 4, 2010 – Lots of stations (places where we deploy our nets) tonight. We actually got a little backed up. There are five people on my shift and it takes all 5 of us working non-stop to get the job done.

July 5, 2010 – I am feeling better today, so much that I uploaded my blog! I keep waking up at 5pm and unable to go back to sleep, but I am going to try now to catch a couple more hours as my shifts starts again in 3 hours.