Martin McClure: Starting the Survey, July 30, 2023

NOAA Teacher at Sea

Martin McClure

NOAA Ship Oregon II

July 25– August 9, 2023

Mission: Shark/Red Snapper Bottom Longline Survey

Geographic Area of Cruise: Gulf of Mexico/Atlantic Ocean

Date: July 30, 2023

Latitude: 31°21.967’N

Lonfitude: 80°12.135’W

Air Temperature: 27.5° C.

Wind Speed: 6.79 kph

Science and Technology Log: Longline Fishing

Teacher at Sea Stephen Kade created this graphic to help explain longline fishing.

We have started the longline survey and it is well organized and exciting. The first part of the process is called the set. We start the fishing process by baiting circle hooks. These hooks are attached to a 12 foot length of 3 mm line called a gangion (gan-jin). We use mackerel for bait. Each piece of fish is hooked through a circle hook.

Circle hooks ready for baiting

Next we drop over a buoy with a radar reflector on top called a hi flier. Attached to this is a 4 mm line called the main line. Then a weight is attached to the line and dropped. This anchors the beginning of the fishing line to the seafloor. Next, a numbered clip is attached to each gangion. The gangions are attached to the main line in order from 1- 50. A second weight is then attached to the main line and the process is repeated with gangions numbered 51- 100. A third weight is then attached to anchor this end of the line to the seafloor.

Tagging and attaching the gangions

Finally, a second hi flier buoy is attached and released to mark the end of the line.  As each of these steps is done a member of the team records it on a computer. This gives a precise time that each baited hook went in the water as well as when and where the anchors and buoys were released. 

Ready to drop the hi flyer

The next step is to take water measurements. This is done with a remarkable device called a CTD. CTD stands for conductivity, temperature and depth. Conductivity is related to how much salt is in the water (salinity) and is related to how well it will conduct electricity. It also measures the temperature and depth of the ocean at that spot. We attach a camera to it to see what the seafloor is made of at that spot. We want to know if it is a sandy bottom, sea grass, muddy, etc.  

The CTD


Then we wait one hour. 


The second part of the process is called the haul. The haul is simply the set done in reverse, except that we often catch fish. The fishermen use a grappling hook to retrieve the main line attached to the hi flier.

Grappling hook ready to thrown

When it is brought on board, the main line is attached to a winch. The winch is used to pull the main line up of the seafloor. As the main line is pulled in the gangions are detached and replaced in a barrel, the numbered clips are detached and kept on a line in number order. That way,  everything is ready to be used for the next set. Whatever is on, or not on, the hook is recorded on the computer. If the bait is missing or damaged is noted.

Weighing a barracuda

Any fish caught is noted on the computer and the team jumps into action. For sharks there are several things that happen. They are identified by species. The hook is removed and the shark is weighed. It is then measured for three different lengths, precaudal (before the tail fin), fork (at the fork in the tail, and total (the end of the tail fin). The sex, male or female,  and maturity is determined. Tissue samples are taken by cutting off a small piece of a fin. This tissue sample is placed in a small plastic vial and labeled. They are also often given a numbered tag. This information is all recorded and entered into the computer. 

Me, tagging a sandbar shark.

Meet the Crew: Lieutenant James Freed

NOAA Corps Lieutenant James Freed is the operations officer for the Oregon II. He has many responsibilities as part of his job. Part of his job is to liaison, or maintain communication, between the science party and the ship’s commanding officer (CO). That means making sure that everything that the science team needs is on the ship. If the science team has needs then we would go through him and not directly to the CO. As Operations Officer he is also in charge of organizing materials when they come aboard the ship. He posts the Plan of the Day which lets everyone on board know what to expect that day. Lieutenant Freed coordinates port logistics for the ship. This means he coordinates the loading and unloading of materials. His duties also include acting as Officer of the Deck (OOD). During this 4 hour shift he is responsible for the ship’s navigation and safety. His emergency response assignments on the Oregon II include being the nozzleman on the fire team, launching life rafts for abandon ship and he goes out on the rescue boat for man overboard. 
Lieutenant Freed grew up in Santa Rosa, California. He attended Santa Rosa Junior College and then transferred to University of California, Santa Cruz where he studied marine biology. During this time he worked as an intern on a fishing vessel and this is where he first heard about the NOAA Corps. He has now been in the NOAA Corps for 6 years. Before being assigned to the Oregon II he was first assigned to the NOAA Ship Bell M. Shimada in Newport, Oregon. He then moved to Seattle working with the Marine Mammal Laboratory at Alaska Fisheries Science Center. For this assignment his duties were quite varied. They included doing a lot of field work, flying drones, and doing whale biopsies. 
Lieutenant Freed is clearly enthusiastic about his career in the NOAA Corps. He describes it as an “incredible career” that supports his growth with leadership and management training. The NOAA Corps is growing with new ships and aircraft and will need to recruit new members.. The ships participate in a wide variety of tasks including fisheries research, oceanographic and atmospheric data collection and hydrographic mapping. 

Personal Log

Well these last few days have been quite a transition. After 2 1/2 days of transit from Pascagoula, MS to Miami. It was a bit shocking to see how the skyline has changed after 40+ years. It has grown, to say the least. We started fishing just north of Miami. The 10 person science team is split into two shifts. I am on the “day” shift. We work from noon to midnight. These long shifts are filled with alternating periods of activity and waiting. After the set we wait for an hour before the haul. Then, depending on where the next set is, there will be another wait of between two to three hours. The hauls seem to follow the same patterns. As the mile of line is reeled in, there are long periods with not much happening. Then, there might be three fish online within a few hooks. Last night it was two baby tiger sharks and a 1200 mm (3 ft. 11 in.) barracuda within about 5 minutes. When there is a shark too big to haul up by hand on the gangion, the crane is used. We all don hardhats, the crane is moved into place and everyone is busy taking measurements, preparing tags, and taking tissue samples. I was warned to bring a lot of reading material for the down time and I did that. However, with so many things to learn, interesting people to talk to, and beautiful scenery to watch, I have had little time for boredom to creep in.

Ready to release a baby tiger shark.

One of the most common questions that I had before I left concerned getting motion sick. Dare I utter the word… seasick. So far, I have been lucky… hmm, I can’t seem to find any wood around here to knock on. I started the voyage with what I consider to be a rational decision, take the Dramamine. We started with two days of beautiful weather. By the first sign of rough seas I had stopped taking the Dramamine so I went outside and watched the horizon for about an hour. I decided that watching the horizon on a beautiful day at sea had no drawbacks. I never did feel nauseaus. Some people recomended that I buy the accupressure bands which I did. When seas get rough and I am inside I will sometimes wear those. I have not been seasick, yet. I still take precautions like not doing computer work inside when in rough seas but so far I have been fine. In fact, as far as I know none of the volunteers or crew have been sick.

I cannot end this blog without acknowledging the stewards in the gally and the impressive menu available at each meal. I think that there are always three choices for a main dish and a variety of sides. Additonally, a salad bar is always available, snacks, and my favorite, ice cream.

Just one of three delicious options that night

Animals seen: sea turtle, dolphin, snake fish, spotted eel, barracuda, shark sucker. Sharks: sandbar shark, tiger shark, Atlantic sharpnose shark, scalloped hammerhead

shame faced crab

Did you know?

Most of the fish that we catch have parasites living in and on them?

Kimberly Scantlebury: Interviews with OPS and ST; May 4, 2017

NOAA Teacher at Sea

Kimberly Scantlebury

Aboard NOAA Ship Pisces

May 1-May 12, 2017

Mission: SEAMAP Reef Fish Survey

Geographic Area of Cruise: Gulf of Mexico

Date: May 4, 2017

Weather Data from the Bridge

Time: 10:25

Latitude: 2823.2302 N, Longitude: 9314.2797 W

Wind Speed: 12 knots, Barometric Pressure: 1009 hPa

Air Temperature: 19.3 C, Water Temperature: 24.13 C

Salinity: 35.79 PSU, Conditions: Cloudy, 6-8 foot waves

Science and Technology Log

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The crew of NOAA Ship Pisecs. Some people have asked me if it is an all male crew. Nope! Even two out of the six NOAA Corps are ladies.

Mother Nature has put a hamper on surveying for right now. Field work requires patience and tenacity, which is appropriate given that is the motto of NOAA Ship Pisces: Patiencia Et Tenacitas. During this downtime I was able to interview a couple members of the crew. Our first interview is with the Operations (Ops) Officer, LT. Noblitt:

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The emblem of NOAA Ship Pisces.

The NOAA Corps is one of seven uniformed services of the U.S. What are possible paths to join and requirements? Do you need a college degree to apply?
Yes, you need a bachelor’s degree in science or engineering.  The only path is through the application process which starts with contacting a recruiter. NOAA Corps officers are always willing to work with interested applicants and are willing to give tours as well as to field any and all questions.

When did you know you wanted to pursue this career?
I decided I wanted to pursue a career with the NOAA Corps during graduate school when I realized that I desired a career path which combined my appreciation for sailing tall ships and pursuing scientific research.

What is your rank and what responsibilities does that entail?
I am an O3, Lieutenant; the responsibilities include operational management.  A lot of day to day operations and preparation for scientific requests, ship port logistics, and some supervision. Operation Officers keep the mission moving forward and always try to plan for what is next.

Why is your work important?
By supporting the scientists we are able to assist in enhancing public knowledge, awareness, and growth of the scientific community which ultimately not only benefits the Department of Commerce but the environment for which we are working in.

What do you enjoy the most about your work?
There is nothing better then operating a ship. I enjoy the feel of the vessel and harnessing the elements to make the ship move how I choose. I enjoy knowing that I am working on something that is bigger than just the ship. This job is a microcosm of all the science that is going on around the world and knowing that we are contributing to the growth of the nation, well nothing can really compete with that.

What is the most challenging part of your work?
In all honesty, being away from family simply does get challenging at times. You are guaranteed to miss birthdays, special events, and even births of your children. Gratification comes from knowing that you are providing everything you can for your family.

What tool do you use in your work that you could not live without?
Now this is an interesting question; I would have to say there really is not just one tool as a NOAA Corps Officer we pride ourselves in being versatile. If it weren’t for the ability to use multiple tools we would not be capable of running and operating a ship.

How many days are you usually out at sea a year?
On average the ship sails 295 days a year.

What does an average day look like for you on the NOAA Ship Pisces?
You are living the average day. Day and night operations three meals a day and keeping operations moving smoothly, all this happens as the ship becomes a living entity and takes on a personality of her own.

What part of your job with NOAA did you least expect to be doing?
In the beginning and early on in a NOAA Corps career an Officer may feel underutilized especially in regards to their educational background when they are working on trivial duties, however with growth over time our scientific backgrounds serve us more than we realize.

What’s at the top of your recommendation for a young person exploring a uniformed service or a maritime career?
If you are seeking to travel and discover an unknown lifestyle at sea; being a Commissioned Officer is a truly diverse whirlwind of experiences that goes by faster then you realize.

What do you think you would be doing if you were not working for NOAA?
If I was not working for NOAA I would probably try working for a similar governmental entity, or even NOAA as a civilian, studying near coastal benthic (bottom of aquatic) ecosystems.

Our second interview is with Todd Walsh, who is a Survey Technician on NOAA Ship Pisces:

What is your title and what responsibilities does that entail?

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Modern vessels require a team of technicians to run. Pictured here is part of the computer server on NOAA Ship Pisces.

Operations and some equipment maintenance of position sensors, sonars, and software. You need to know water chemistry because you also take water samples such as temperature, depth, conductivity to determine the speed of sound. From that we can make sure the sonar is working right, so you need the math to make it happen.

Pisces is different than some other NOAA vessels because it has a lot of other sensors. On some other NOAA vessels I have worked on there are also smaller boats that have the same equipment to keep in shape. You also need to analyze the data and make recommendations in a 60 page report in 90 days.

What are the requirements to apply for this job?
A bachelor’s of science in computer mapping, engineering, geology, meteorology, or some other similar degree.

When did you know you wanted to pursue this career?
I was a project engineer for an engineering company prior to this. We did work on airports, bridges, etc. I retired and then I went back to work in 2009 and I’ve been working for NOAA ever since. I got involved with NOAA because I wanted to see Hawaii and I found a job on board a ship that would take me there. I’ve now worked in the Arctic, Atlantic, and Pacific.

Why is your work important?
No matter which NOAA division you are working at it is integral to commerce in the country. The work we are doing here is important for red snapper and other fisheries. The work I did in the Bering Strait helped determine crab stocks. Ever watch Deadliest Catch? I got to play darts with the captain of the Time Bandit. There’s a different code for people who are mariners. You help each other out.

What do you enjoy the most about your work?
I like that we get to go exploring in places that most people never get to go (in fact, some places have never been visited before), with equipment that is cutting edge. There are always puzzles to solve. You also meet a lot of different people.

What is the most challenging part of your work?
It is:
-Man versus nature.
-Man versus machine.
-Man versus self because you are pushed to your limits.
Another challenge is missing my wife and kids.

What tool do you use in your work that you could not live without?
Since you are stuck on a boat, the biggest tool is to be able to deal with that through being friendly and having ways to occupy yourself in downtime.

Work-wise, it used to be the calculator. Now it’s the computer because it can do so much. All the calculations that used to be done by pen and calculator are now by computer. Cameras are also very useful.

How many days are you usually out at sea a year?
Used to be 8 months out of 12. That’s tough since there is no cellphone coverage but some ships are close enough to shore to use them. The oceanographic vessel Ronald H. Brown went around the world for 3 years.

What does an average day look like for you on the NOAA Ship Pisces?
I’m relatively new to this ship, but all ships are unique depending on what they’re studying. Each ship is a different adventure.

What part of your job with NOAA did you least expect to be doing?
When I was in Alaska training less experienced survey technicians in the Bering Strait, I got to see really neat stuff like being next to a feeding orca, atop a glacier, and got too close to a grizzly bear.

What’s at the top of your recommendation for a young person exploring a maritime career?
Stick with the science classes and you can never go wrong with learning more math.

Personal Log

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Imagine the size of the wave capable of getting the top wet!

When bringing in a camera array today that was left out overnight, a huge wave crashed aboard all the way up to the top of the bridge. At that same time I was in my stateroom laying down trying to avoid seasickness. I could hear the metal moving, the engines running strong, and knew something interesting was happening. I almost went down to check out the action, but decided against bumping into everyone during higher seas operations and potentially really getting sick.  

Quote of the Day:
Joey asked which stateroom I am in and I say, “The one next to the turny-door-thingy.” to which Joey replies, “You mean the hatch?”
What can I say? If you can not remember a word, at least be descriptive.

Did You Know?

NOAA operates the nation’s largest fleet of oceanographic research and survey ships. It is America’s environmental intelligence agency.

Maria Madrigal: Highlighting the NOAA Corps, April 18, 2012

NOAA Teacher at Sea

Maria Madrigal

NOAA Ship Oscar Elton Sette

April 2-18, 2012

Mission: Comparison of Fishery Independent Sampling Methods

Geographical area of cruise: Tutuila, American Samoa

Science & Technology Log: April 18, 2012


One of the first individuals I met when I came on-board the Oscar Elton Sette was Operations Officer, Justin Keesee. Not only was he friendly but he also looked like he knew what he was doing. So, who is he and what does he do?

Lieutenant Justin Keesee
Lieutenant Justin Keesee

The NOAA research vessels are operated by commissioned officers that are part of the NOAA Corps. The NOAA Corps is one of the seven uniformed services of the United States and is administered by the Department of Commerce. The other uniformed services are the Army, Marine Corps, Navy, Air Force, Coast Guard and the Public Health Service Commissioned Corps. “NOAA Officers can be found operating one of NOAA’s 19 ships or 12 aircraft to provide support to meet NOAA’s missions.”

Justin’s knowledge of the NOAA Corps didn’t come until after a few years of experience working in Alaska where he was a fisheries observer collecting data on Pollock and Pacific Cod. Periodically, he would travel back to NOAA’s Western Regional Center’s Sand Point Facility in Seattle, Washington for debriefing meetings with a FMA (Fisheries Monitoring and Analysis) staff member and thoroughly reviewing the data collected. He worked as an observer over the span of five years.

He learned about the NOAA Corps when he reconnected with a college friend that joined the NOAA Corps right after earning his undergraduate degree. Having a degree within the major fields of study “that align with NOAA’s scientific and technological activities” is one of the educational requirements to apply to the NOAA Corps. Justin studied marine biology and earned his degree from the Florida Institute of Technology. His interest in science and the appeal of working for a government agency drove his decision to apply.

Lt Justin Keesee on watch
Lt Justin Keesee on watch

He confided that he was more interested in the science aspect of the job and he didn’t really know what he was getting into until he began his basic training. He described it as an intensive course in piloting a ship; the training ranged from learning navigational rules to mastering his knot tying skills. After completing basic training, officers are assigned to a NOAA ship for three years and then are appointed to a shore assignment for two years, which varies from working in a laboratory to doing administrative work. Officers are then on a continual rotation between ship and shore assignments. NOAA Corps officers are eligible for all military benefits including the new GI bill which delivers military education benefits to not only veterans but also active duty personnel. Keesee is taking advantage of this opportunity and working towards earning a master’s degree in business administration from his undergraduate alma mater.

Officer Keesee was first assigned to the NOAA ship Oregon II  based out of Pascagoula, Mississipi.  Before arriving on the Oscar Elton Sette, he also completed his first shore assignment at the Panama City Lab which is one of the five laboratories that conducts research as part of the Southeast Fisheries Science Centers. He currently serves as the Operations Officer, which means he is responsible for communicating with the scientific staff and the ship’s crew to ensure all needs are met and procedures are carried out safely. He has two four-hour shifts on the bridge as the officer on watch. The bridge is basically the control room that has a clear view of the ship’s path and holds all the necessary equipment to safely navigate the ship including nautical charts and various radar screens. During this watch time, he is responsible for the overall safe navigation of the ship ensuring that the ship is maintaining a safe distance from other vessels, tracking any weather patterns, maintaining communication with any small boats that may be out on the water, and ensuring any scientific equipment isn’t damaged by other boats. One perk of his job, is that he has a great view from his office.

When asked “if you you only knew then, what you know now what advice would you give yourself” his response was “to relax a little and enjoy my time with NOAA.” He further explained that he sometimes takes things too seriously but it is only because he wants to do a great job. He communicates well with the scientific staff and holds the respect of the ship’s crew. I’m only a visitor on this ship but it is evident that Officer Keesee has a great work ethic and represents the caliber of the personnel that comprise the NOAA Corps.

NOAA Corps Officers
NOAA Corps Officers

There were a total of five NOAA Corps officers aboard the Oscar Elton Sette during the research cruise. The ship normally has four officers but due to the busy workload associated with the comparison study, LCDR Colin Little was added to the ship’s crew.

NOAA Corps Officers
NOAA Corps Officers, (Pictured from left to right): Lieutenant Commander Kurt Dreflak, Lieutenant Justin Keesee, Ensign Daniel Langis, Lieutenant Commander Colin Little & Chief Mate Richard Patana (front) Ensign Justin Ellis