Dana Chu: May 17, 2016

NOAA Teacher at Sea
Dana Chu
On Board NOAA Ship Bell M. Shimada
May 13 – 22, 2016

Mission: Applied California Current Ecosystem Studies (ACCESS) is a working partnership between Cordell Bank National Marine Sanctuary, Greater Farallones National Marine Sanctuary, and Point Blue Conservation Science to survey the oceanographic conditions that influence and drive the availability of prey species (i.e., krill) to predators (i.e., marine mammals and sea birds).

Geographic area of cruise: Greater Farallones, Cordell Bank, and Monterey Bay National Marine Sanctuaries

Date: Tuesday, May 17, 2016

Weather Data from the Bridge
Clear skies, light winds at 0600 increased to 18 knots at 0900, 6-8 feet swells

Science and Technology Log

Ahoy from the Bell Shimada! Today, I will explain three of the tools that are deployed from the side deck to obtain samples of the water and the ocean’s prey species.

First off we have the Harmful Algal Bloom Net, also known as the HAB Net, which is basically a 10-inch opening with a 39-inch fine mesh netting attached to a closed end canister. The HAB net is deployed manually by hand to the depth of 30 feet three consecutive times to obtain a water sample. The top fourth of the water collected is decanted and the remaining water (approximately 80ml) is transferred to a bottle which is then sealed and labeled with the location (latitude, longitude), date, time, vertical or horizontal position, and any particular comments. The samples will eventually be mailed off to California Department of Health Services lab for analysis for harmful toxins from algae that can affect shellfish consumers.

Next we have the hoop net, which is pretty much similar in design to the HAB net, except for a larger opening diameter of 3 feet (think hula hoop) and a net length of nine feet. The net tapers off into a closed container with open slits on the sides to allow for water drainage. The purpose of the hoop net to collect organisms that are found at the various depth levels of the deployment. The hoop net is attached to a cable held by the winch. The hoop net is lowered at a specific angle which when calculated with the speed of the vessel equates to a certain depth. The survey crew reports the wire angle sighting throughout the deployment.

Every time the hoop net is brought back up there is a sense of anticipation at what we will find once the canister is open. Coloring is a good indicator. Purple usually indicates a high concentration of doliolids, while a darker color may indicate a significant amount of krill. Phytoplankton usually have a brownish coloring. Many of the hoop net collections from today and yesterday include doliolids and colonial salps, neither are very nutrient dense. Yesterday we also found pyrosomes, which are transparent organisms that resemble a sea cucumber with little bumps and soft thorns along their body. The smallest pyrosome we came upon was two and a half inches with the largest over six inches long. A few small fish of less than one inch in length also showed up sporadically in these collections as well.

The Scientific team is looking for the presence of krill in the samples obtained. The Euphausia pacifica is one of the many species of krill found in these waters. Many tiny krill were found in the various hoop net deployments. On the last hoop net deployment for today and yesterday, larger sized krill of approximately 1 inch) were found. This is good news because krill is the dominant food source for marine mammals such as whales. Ideally it would be even better if the larger krill appeared more frequently in the hoop net samples.

Finally, we have the Tucker Trawl, which is the largest and most complex of the three nets discussed in today’s post. The Tucker Trawl consists of three separate nets, one for sampling at each depth: the top, middle, and bottom of the water column. Like the hoop net, the tucker trawl nets also have a canister with open slits along the side covered with mesh to allow water to drain. All three nets are mounted on the same frame attached to a wire cable held by the winch. As the Tucker Trawl is towed only one net is open at a time for a specific length of time. The net is closed by dropping a weight down along the tow. Once the weight reaches the net opening, it triggers the net to shut and sends a vibration signal up the cable line back to the surface which can be felt by the scientist holding the cable. The net is then towed at the next depth for ten minutes. Once the last net tow has been completed, the Tucker Trawl is brought back up to surface. Similar to the hoop net, the survey tech reads the wire angle throughout the deployment to determine the angle the cable needs to be at in order for the net to reach a certain depth. This is where all the Geometry comes in handy!

As mentioned already, with three nets, the Tucker Trawl yields three separate collections of the nutrients found within the top, middle and bottom of the water column. Once the nets are retrieved, each collection container is poured into a different bucket or tub, and then into a sieve before making it into a collection bottle. If there is a large quantity collected, a subsample is used to fill up a maximum of two bottles before the remainder is discarded back into the ocean. Once the samples are processed, an outside label is attached to the bottle and an interior label is dropped inside the bottle, formalin is added to preserve the sample organisms collected so that they can be analyzed later back in the lab.

Personal Log

It is so good to finally get my sea legs! I am glad I can be of use and actively participate. Cooperative teamwork is essential to getting everything to flow smoothly and on time. The Bell Shimada’s deck crew and NOAA team work hand in hand with the scientists to deploy and retrieve the various instruments and devices.

In the past two days I am getting a lot of hands on experience with deploying the HAB net to assisting with processing samples from the HOOP Net and Tucker Trawl. It’s always exciting to see what we might have collected. I can’t wait to see what the rest of the week may bring. I wonder what interesting finds we will get with the midnight Tucker Trawl samples.

Lesson Learned: Neatness and accuracy are imperative when labeling samples! Pre-planning and preparing labels ahead of time helps streamline the process once the samples are in hand.

Word of the Day:        Thermocline – This is the depth range where the temperature of the water drops steeply. The region above the thermocline has nutrient depleted waters and while the region below has nutrient rich waters.


Talia Romito: Second Day at Sea, July 25, 2012

NOAA Teacher at Sea
Talia Romito
Onboard R/V Fulmar
July 24– July 29, 2012

Mission: Ecosystem Survey
Geographic area of cruise: Cordell Bank and Gulf of the Farallones National Marine Sanctuaries
Date: July 25, 2012

Location Data:
Latitude: 37 53.55 W
Longitude: 123 5.7 N

Weather Data From Bridge:
Air Temperature 12.2 C (54 F)
Wind Speed 15 knots/ 17 mph
Wind Direction: From the South West
Surface Water Temperature: 13 C (55.4 F)

Science and Technology Log

Wednesday July 25, 2012

Up Early!

I woke up at 6 AM to the sounds of the people scurrying around to get ready for departure.  The Captain, Erik, and Mate, Dave were preparing the boat while the rest of us were getting breakfast and loading gear.  We welcomed four people onto the boat to complete the team for the day.

Me on the left in my Rubber Fashion Statement

Me on the left in my Rubber Fashion Statement

Today we are completing both the Offshore and Nearshore Line 6 transects.  It is going to be a long day for me with eight stations along the transect for deploying different instruments for gathering data.  I’ll tell you more about that a little later.  The scientists and crew decided to start at the West end of Offshore Line 6.  It took about two hours to get out there so while the crew was in the Wheelhouse the rest of us were able to settle in for little cat naps.  It felt so good to be able to get a little more sleep before the work began.

Gear Up and Get to Work!

With ten minutes until “go” time, the team started to get ready for the long day ahead.  Everyone had on many layers of clothes with a protective waterproof outer layer.  I put on my black rubber boots, yellow rubber overalls, and bright orange float coat (jacket with built-in floatation).  I looked like a bumble bee who ran into an orange flower.  It was definitely one of my better fashion statements.  I think everyone should wear rubber clothes in bright colors, just kidding :P.

Conductivity - Temperature - Depth CTD

Conductivity – Temperature – Depth – CTD

The boat stopped and then Kaitlin and I got to work on the back deck.  At each station we deployed at least two pieces of equipment.  The first is the CTD which means Conductivity, Temperature, and Depth.  This machine is so cool. It gathers information about a bunch of different things.  It has four different types of sensors.  They include percentage of dissolved oxygen, turbidity (amount of particulates in the water), fluorometer for chlorophyll A (the intensity and wavelength of a certain spectrum of light), and a conductivity/ temperature meter in order to calculate salinity.

The second piece of equipment is the Hoop Net.  The name is pretty intuitive, but I’ll describe it to you anyway.  There is a large steel hoop that is 1 meter in diameter on one end.  The net connects to it and gradually gets smaller to the cod end at the collection bucket which is 4.5 centimeters in diameter.

Hoop Net on the winch

Hoop Net

The net is 3.5 meters long from hoop to where it connects to the collection bucket and the mesh is 333 microns.  The bucket has screens that allows water and phytoplankton to escape.  The purpose of the hoop is to collect zooplankton.  The samples we collect to go the Institute of Ocean Sciences in Canada to be processed after the cruise is over.

The third piece of equipment is the Tucker Trawl.  We deploy it once each day near the Shelf Break in order to collect krill.  This net is huge and heavy.  This net allows the scientists to get samples at different depths within the water column.  The Tucker Trawl has three separate nets; top, middle, and bottom.  They deploy it with the bottom net open and then close the bottom and open the middle and top nets in order as the net raises.  They let out  400 meters of cable in order to be at a depth of 200 meters below the surface to start and raise the net from there stopping twice to open the next two nets.  The scientists watch the eco-sounder (sophisticated fish finder) and determine at what depth they would like to open the next two nets.  Please watch the video to get a clear picture of what is going on and how awesome it is.

The Funny Part!

Blow out Pants

Blow out Pants

Ok so working on the back deck has a  lot of ups and downs literally.  When Kaitlin and I are deploying or recovering the CTD and Hoop Net we are bending, stretching, working on our knees and more.  The first time I bent over to rinse down the hoop net I accidentally dropped the spray nozzle and it locked in the open position; I was sprayed with a steady stream of seawater right in the face until Kaitlin was able to turn in off.  It was definitely a cold welcome to work on the boat.  Oh yeah, I forgot to tell you we use seawater on the back deck for rinsing nets, etc.  There is a freshwater hose, but that is mainly used to clean the boat after each cruise.  The second time I got on my knees to collect a specimen from the Hoop Net I had a blow out!  My rubber pants split right down the middle.  So much for being prepared.  The Mate Dave was nice enough to let me borrow his rubber pants for the remainder of the trip.  Thanks Dave – you’re a life saver.

Camaraderie and Practical Jokers!

In between the stations and observing we all like to have a good time.  We always snack in between.  If someone gets something out then we all help ourselves to some of theirs or our own concoction.  We’re eating pretzels, chips and salsa, carrots and humus, pea pods, dried apple chips and more.

Fishing Lure

Fishing Lure

Erik had been planning to punk the scientists during this trip.  He bought a blue glittery fishing lure that looks like a centipede and waited for the most opportune moment to pull his prank.  While the scientists were getting the Tucker Trawl ready he tossed the lure into one of the nets so that it would come up with the sample.  When we pulled up the net Kaitlin and I saw it in the collection bucket and were very curious about what it was.  We called Jamie over and after a few moments realized it was a lure and looked up to see Erik and Dave laughing hysterically at us.  It was a good time all around.  At the same time the observers where coming down from the Flybridge and Jamie was able to continue the prank for at least fifteen minutes.  We all had a good laugh when the second group realized it was a lure too.

View from the Boat!

Black Footed Albatross

Black Footed Albatross

This is one of the best parts of the day!  I saw so many different animals from the boat during the day.  Here are just a few of the highlights.  A mother whale and calf pair were breaching multiple times.  Another Humpback Whale was tail slapping at least 12 times that I counted.  We saw Blue Whales too.  The seabirds were around as well.  The most common were Sooty Shearwaters, Common Murres, Pomarine Jaegers, and Black Footed Albatrosses.  All of these birds are amazing.  If you see a Common Murre adult and chick; the adult is the dad he’s the one that raises the chick.  The Jaeger has a special kind of scavenging style called Cleptoparasitism (stealing food from other birds).  I saw one chasing another bird till it dropped its food in mid-air and the Jaeger caught the fish before it hit the water.  Pretty cool right?!

On the way back to Sausalito we went right under the Golden Gate Bridge.  The weather was perfect.  The sun was setting with puffy clouds in a baby blue sky.  As my eyes drifted down towards San Francisco I was mesmerized by the view.  I could see the entire Bay.  The buildings reflected the golden glow of the sunset perfectly.  There wasn’t a whisper of fog on the water; I could see Alcatraz Island, Angel Island, and The Bay Bridge.

Deborah Moraga, June 21, 2010

NOAA Teacher at Sea Log: Deborah Moraga
NOAA Ship: Fulmar
Cruise Dates: July 20‐28, 2010

Mission: ACCESS
(Applied California Current Ecosystem Studies)
Geographical area of cruise: Cordell Bank, Gulf of the Farallones and Monterey Bay National Marine Sanctuaries
Date: June 21, 2010

The R/V Fulmar

The R/V Fulmar sets out from the dock early each morning. This ACCESS cruise has 5 members of the scientific team and myself (the NOAA Teacher at Sea.) There are two crew members for a total 8 people onboard.

The three central California National Marine Sanctuaries and the ports where the R/V Fulmar docks

The three central California National Marine Sanctuaries and the ports where the R/V Fulmar docks

Applied California Current Ecosystem Studies

Applied California Current Ecosystem Studies

National Marine Sanctuaries

National Marine Sanctuaries

ACCESS is an acronym for Applied California Current Ecosystem Studies. This is a partnership between PRBO Conservation Science, Cordell Bank National Marine Sanctuary and the Gulf of the Farallones National Marine Sanctuary. These groups of conservation scientists are working together to better understand the impacts that different organisms have on the marine ecosystem off the coast of central California.

Immersion suit for safety

They do this so that policy makers (government groups) have the most accurate data to help them make informed decisions on how the productive waters off the coast can be a resource for us and still protect the wildlife. You can read a more in depth explanation at http://www.accessoceans.org

Flying Bridge

The R/V Fulmar is a 67 foot Marine Grade Aluminum catamaran (a multi hulled vessel.) This vessel can travel 400 miles before refueling and can reach 27 knots (30 miles per hour) with a cruising speed of 22 knots (25.3 miles per hour.) Although that may sound slow compared to the cars we drive… you have to take into account that there can be 10 foot waves to go over out on the ocean.

The Fulmar’s homeport (where the boat ties up to dock most of the time) is in Monterey Bay, CA. For this cruise we will come into port (dock) in Bodega Bay, Sausalito, and Half Moon Bay. Each morning the crew wakes up an hour before the time we start out for the day. They check the oil and look over the engines, start the engines, disconnect the shore power and get the boat ready to sail out for a ten hour day.

Today (July 23, 2010) we left at 0700 (7:00 a.m.) out of Bodega Bay. Bodega Bay is on the coast of Sonoma county, California. It is from Bodega Bay that we will travel offshore to the “lines” that we will be surveying. Today we will survey lines one and two.

Then after the day’s work is done, we will sail into port, tie up to the dock and have dinner. The scientists and crew members sleep on the boat in the berths (bunks) that are located in the hulls of the boat.

“Okay, take a survey of the types of pets your classmates have at home. Then create a graph.” How many times have math teachers assigned that assignment and expected that students knew how to survey? Today I received firsthand knowledge of how a survey takes place.

Marine scientist scanning for wildlife

Up on the flying bridge (about 5.5 meters from the surface of the ocean) scientists are surveying birds and marine mammals. There is a protocol that each follows. Here, the protocol is basically a list of agreed upon rules on how to count the marine life seen on the ocean. One researcher inputs the data into a waterproof laptop…imagine chilling at the pool and being able to surf the web! There are other researchers sitting alongside and calling out the types of birds and marine mammals they see. The researchers surveying the birds and mammals use not only their eyes but also binoculars.

Krill collected by the Trucker Trawl

After the researcher spots and identifies the birds or mammals, they call out their findings to the recording scientist in a code like fashion, doing this allows for the data to be inputted faster. The team can travel miles without Krill collected by the Trucker Trawl Researcher recording observations on the flying bridge Pacific White Sided dolphins bow riding seeing any organisms or there may be so many that the scientist at the laptop has a tough time keeping up. In this case the surveying scientist may have to write down their findings and report them when there is a break in the action.

Imagine that you are driving down the highway with your family. You have been asked to count the number humans, cows, horses, goats, dogs, cats, cars or trash on your trip. How would you make sure that your family members didn’t double count and still record all that you see? This is where protocols (instruction/rules) come in. So, let us say that you are behind the driver, and your brother or sister is in the backseat next to the window. There is also a family member in the passenger seat up front (yeah they called ‘shot gun’ before you did.) This is much like the seating arrangement on the flying bridge of the R/V Fulmar.

Researcher recording observations on the flying bridge

So how could you split up the road and area around the road so that you do not count something twice? You could split the area that you see into two parts. Take your left arm and stick it straight out the window. Have your sister/brother stick their right arm out their side window. If we drew an arc from your arm to your sibling’s arm it would be 180 degrees. Of the 180 degree arc, you are responsible for counting everything from your arm to the middle of the windshield. So, you are responsible for 90 degrees and your sibling has the other 90 degrees from the middle of the windshield to their arm.

Pacific White Sided dolphins bow riding

Once you start counting you need to record the data you are collecting. Can you write and count at the same time? Not very well, so we need someone to record the data. There are actually a lot of points of data that you need to enter.

You need to tell the recorder…
• Cue: How did you see the item you are counting?
• Method: Were you searching by eye or using a pair of binoculars?
• Bearing: The angle that the item is from the car as related to the front of the car.
• Reticle: How far the item was from your car when you first observed it (you would use your binoculars for this measurement).
• Which side of the car are you on and who is dong the observing?
• Behavior: What was the organism doing when you spotted it? Was it traveling, feeding or milling (just hanging out)?

Deploying the CTD

You also have to determine the age and sex of the organism. You need to record the species of the organism and how many you observed.
Now that is all for the species above the ground… what would you do for the animals below the road surface? On the R/V Fulmar they collect species from below the surface of the ocean and data about the water. They do this several different ways…

Bringing in the Hoop Net

1. CTD: Conductivity, Temperature, and Depth. This is a tool that records the physical properties of the ocean. It records…

a. Salinity (amount of salt in the water)
b. Temperature (how hot or cold the water is)
c. Depth (how far the instrument travels below the surface)
d. How much chlorophyll is in the water
e. Turbidity (how murky or clear the water is)
f. How much oxygen is in the water

Deploying the Tucker Trawl

2. Hoop Net: Looks like a very heavy hula hoop. Except this hoop has a cone shaped cylinder made of fine mesh attached to it. At the apex of the cone, a small PVC container, called a cod end, is attached. Zooplankton (tiny swimming animals) and some phytoplankton (tiny marine plants) are funneled into the cod end of the net as it is towed behind the boat. When the net comes back to the boat, the researchers take off the cod end and use this sample of organisms.

Collecting data from the CTD

3. Tucker Trawl: Is like three hoop nets attached together. The cool thing about this big net is that the scientists can close each net at different depths. As Map of the transect lines Retrieving the Hoop Net Phytoplankton Net the net is towed behind the boat they “close” each net to capture zooplankton at different depths. The tucker trawl is used primarily to collect krill

Map of the transect lines

Have you ever lost something in your room? Perhaps it was your homework? The bus is coming and you have to find your binder. So you start tearing your room apart. By the time the bus is five minutes away… you room looks like a disaster and you can’t remember where exactly you have looked and yet, still no binder.
Imagine a group of scientists 30 miles offshore, doing that same type of “looking” for organisms, with the captain piloting (driving) the boat any which way. Just like your binder that was missed when you were looking for it, number and location of organisms in parts of the ocean would be missing from the data set.

Retrieving the Hoop Net

So if you wanted a systematic way to look for your homework that is lost in your room, you would imagine a grid. You would have lines running from one wall to another. These lines would be parallel to each other. You would walk along the line looking for you binder. When you came to the end of the line (at your wall) you would then start on another line. By walking back and forth in your room in this systematic way, you will not miss any part of your room.

Phytoplankton Net

You have just traveled along a transect line. A transect is a path you travel and as you do you are counting and recording data. On the R/V Fulmar, scientists are counting birds, marine mammals, and collecting krill. By counting how many and what kinds of organisms are along the transect line, scientists will be able to calculate the density of organisms in a given area. There are several different types on lines that we survey. There are the near shore transects…which extend 12 kilometers from the shore (that is as long as running back a forth a football field 131 times). Offshore lines are 50 to 60 kilometers from the coast. Imagine how many football fields that would be!

Bow of R/V Fulmar

Density… Take your right hand and put it in your right front pocket of your pants and pull out all the coins you have in your pocket. Looking down at your hand you count 10 dimes. Now do the same for your left hand. You found you have two dimes. The “area” those coins were located is equal… meaning your pockets are the same size. The density of coins in your pockets is greater in your right pocket because there are more coins per square inch than in your left pocket.

Humpback Whale

The researchers on the ACCESS cruise use the data they have collected out in the field (in this case the field is the three central California National Marine Sanctuaries) to calculate the density of the organisms they are researching. They are counting and recording the number of organisms and their location so they can create graphs and maps that show the distribution of those organisms in the waters off the coast.

Taking a surface water sample

Why do they need this information? The data starts to paint a picture of the health of the ecosystem in this part of the world. With that information, they can make suggestions as to how resources are used and how to protect the waters off the California coast. By using data that has been collected over many years, suggestions can be made on how the ocean can still be utilized (used) today while insuring that future generations of humans, marine mammals, birds and krill have the same opportunities.

whale breach

whale breach