Steven Frantz: Critters at Sea, August 5, 2012

NOAA Teacher at Sea
Steven Frantz
Onboard NOAA Ship Oregon II
July 27 – August 8, 2012

Mission: Longline Shark Survey
Geographic area of cruise: Gulf of Mexico and Atlantic off the coast of Florida
Date: August 5, 2012

Weather Data From the Bridge:
Air Temperature (degrees C): 29.0
Wind Speed (knots): 10.28
Wind Direction (degree): 138.68
Relative Humidity (percent): 076
Barometric Pressure (millibars): 1022.33
Water Depth (meters): 28.45
Salinity (PSU): 35.612

Location Data:
Latitude: 3323.40N
Longitude: 07808.17W

Critters at Sea

On my last blog I introduced you to five species of shark found so far. I think you can tell which one is my favorite, which is yours?

Even though our mission is to collect data on sharks, you never know what might come up on the end of a hook (or tangled in the line!). Data is still collected on just about everything else we catch. For today’s blog I have put together a photo journey on the so many other beautiful creatures we have caught.

Basket Starfish
Basket Starfish with pieces of soft red coral
Black Sea Bass
Black Sea Bass
Blue Line Tile Fish (Unfortunately damaged by a shark)
Blue Line Tile Fish (Unfortunately damaged by a shark)
Box Crab
Box Crab
Clearnose Skate
Clearnose Skate
Conger Eel
Conger Eel
Red Grouper
Red Grouper
Mermaid's Purse (egg case from a skate or ray)
Mermaid’s Purse (egg case from a skate or ray)
Candling the Mermaid's Purse reveals the tail and yolk of the animal
Candling the Mermaid’s Purse reveals the tail and yolk of the animal
Hammerjack
Amberjack
Scallop Shell
Scallop Shell
Scomberus japonicus (Can you come up with a common name?)
Scomberus japonicus (Can you come up with a common name?)
Sea Urchin
Sea Urchin
Spider Crab
Spider Crab
Starfish
Starfish
Red Snapper (10Kg)
Red Snapper (10Kg)

There you have it. I hope you enjoy the pictures of just some of the beauty and diversity in the Atlantic Ocean. Be sure to visit my next blog when we tie up loose ends!

Sunset
Sunset

Marsha Skoczek: There’s No Place Like Home, July 17, 2012

NOAA Teacher at Sea
Marsha Skoczek
Aboard NOAA Ship Pisces
July 6-19, 2012

Mission: Marine Protected Areas Survey
Geographic area of cruise:  Subtropical North Atlantic, off the east coast of Florida.
Date:  July 17, 2012

Location:
Latitude:  30.4587N
Longitude:  80.1243W

Weather Data from the Bridge
Air Temperature:  26.8C (80.24 F)
Wind Speed:  10.8 knots (12.43 mph)
Wind Direction:  From the SE
Relative Humidity: 79 %
Barometric Pressure:  1017
Surface Water Temperature:  28.9C (84 F)

Science and Technology Log

South Atlantic MPAs

During the thirteen days we have been out to sea doing research, we have sent the ROV down both inside and outside of five different MPAs  from Florida to North Carolina and back again.  This allows the scientists to compare fish populations and densities both inside and outside of the MPAs.  Since we left Mayport Naval Station in Jacksonville, Florida, we have been averaging a distance from shore of between 50 and 70 nautical miles.  It will be fourteen days until we see land once again.  From this distance, the ocean seems to stretch on forever.  Gazing at the beautiful blue water, it is easy to forget an entire other world lies beneath us.  Not all of the ocean floor is flat, there is a small percentage that does have some elevation and structure.  The type of structures on the ocean floor determine what types of species will live there.

For this mission, we have mainly been studying areas within the mesophotic zone of the ocean ranging from 40 to 150 meters (130 – 500 feet) below the surface.  Temperatures here range from 12 – 23 degrees Celsius (50-70 F). Very little sunlight reaches the mesophotic zone, but zooxanthallae are still able to photosynthesize at this depth.  Corals and sponges will also filter feed using the abundant particulate organic matter drifting in the water column they will filter out and eat the plankton.

Tomtates hide in crevices.

The multibeam images help the scientists determine where to launch the ROV.  Areas with a change in elevation tend to indicate that there are rock structures below the surface.  It is around these rocks that the majority of fish prefer to live, so these are often the areas at which the scientists chose to collect data.

The ridges we have seen range in height from 1 meter to 5 meters.  The fish really like areas in the rock that have cracks, crevices and overhangs for them to hide.  Many times as the ROV approached the fish, they would scurry into a nearby hiding place.  I can’t help but imagine that the ROV with its bright lights and unnatural features must seem like an alien spacecraft to these fish that have never had contact with humans before.  But ROVs aren’t the only thing that these fish need to hide from.  I noticed that the larger fish that are toward the top of the food chain were not as skittish as the smaller reef fish.  Sometimes amberjacks and scamp would even follow the ROV as if curious about we were doing.  And lionfish never budged as the ROV passed unless it happened to be sitting in the ROV’s path.

Lobster hiding in rock. Notice how his coloring resembles the reef behind him.
Eel hiding under sponge
Scorpionfish against Diodogorgia

The fish are not the only living things that like these rocky habitats.  Usually when there are rocky surfaces, we find sponges, corals, hydroids and algae growing on top.  These creatures not only give the reef its beautiful appearance, but they also help to provide habitat as well.

Notice how the flounder blends in with the sand?
Sand tilefish make their burrows in the rubble under the sand.
Spider crabs on sandy bottom

Species that live in the sandy bottom habitat have their own set of adaptations. Animals such as the flounder and sea cucumbers have skin colorations that match the speckled appearance of the sand itself.  Sand tilefish carve out burrows from the rubble beneath the sand.  The spider crabs have a carapace that mimics the texture of the rocks it lives near.  The stingrays, with their low profile, sit on the sandy bottom and use their mouth to scour the sand in search of crabs and clams to eat.

Lophelia at artificial reef
Anemone at artificial reef
artificial reef

Artificial habitats are also full of life.  At the shipwreck we visited, not only did we see fish living here, we also saw anemone, tube worms, Venus flytrap anemone, hermit crabs, eels, Lophelia coral to name a few.  Other man-made habitats can help rebuild coral reefs.  John Reed has placed reef balls on the Occulina Reef in an effort to rebuild the original reef damaged by bottom trawling. These reef balls provide a structure for the corals to anchor themselves to and give the fish places to hide. Even oil platforms can be considered as an artificial reef structure giving a wide variety of species a sturdy structure to call home.

 

Personal Log

The Science Party

While aboard the Pisces I have learned to identify well over 100 different species of fish and invertebrates.   Andy and Stacey quiz me as we are watching the live footage, and I think I finally can tell the difference between a reef butterfly and a bank butterfly.  John frequently hands me a text book and challenges me to look up the species we see on the ROV live feed.  I am extremely appreciative of everyone being so helpful and sharing their knowledge with me.  Each of the scientists have taken the time to answer all of the question that I have.  The crew of the Pisces has also been wonderful to work with.  Everyone has done their best to make me feel at home. This has been such an amazing experience, I am excited to bring it all back to the classroom this fall!  I will never forget my time on the Pisces.

Ocean Careers Interview

In this section, I will be interviewing scientists and crew members to give my students ideas for careers they may find interesting and might want to pursue someday.  Today I interviewed John Reed and Stephanie Farrington.

John Reed

Mr. Reed, What is your job title?  I am the Research Professor in the Robertson Coral Reef and Research Program at Harbor Branch Oceanographic Institute (HBOI) at Florida Atlantic University (FAU).

Why did you decide to become a marine biologist?  I always knew that I wanted a career where I could do my work outside.  My biggest influence came when I was around 13 – 14 years old, I remember watching “The Undersea World of Jacques Cousteau” every Sunday night with my family and thinking that’s what I want to do!

What type of responsibilities do you have with this job?  Currently I am studying deep coral reefs as part of the Robertson Coral Reef and Research Program and several NOAA grants. My focus is primarily off the Florida coast and up through the Carolinas.  My objective is to protect and conserve deep sea coral ecosystems.  Around Florida alone, our group has discovered over 400 individual deep coral mounds some over 300 ft tall.  We have calculated that the area of these deep water reefs may exceed that of all the shallow water reefs in the United States combined.  These reefs habitats are incredibly diverse with hundreds of different species of bivalves, crustaceans and fish just to name a few.  Deep water hard corals grow very slowly, only about half an inch per year, core sampling has dated deep coral mounds at over 1,000,000 years old.  It is vital that we protect these deep reefs from destructive fishing methods such as bottom trawling or energy projects.

I also manage the archives for the biomedical marine division at Harbor Branch where we have over 35,000 deep and shallow marine specimens from around the world.  Each specimen has video footage of it in its natural habitat (in situ from the Johnson-Sea-Link submersible), still photos, museum samples as well as several smaller samples for our biomedical research.  We have discovered novel compounds from some of these marine organisms which may be future cures for cancer or other diseases.  Currently our chemists and biologists are working on the chemical compounds that we discovered in a deep water sponge that grows off Florida.  In the lab it is potent against pancreatic cancer which is a very deadly disease.

What type of education did you need to get this job?  I earned my Bachelors Degree in chemistry and biology from University of Miami and my Masters Degree in marine ecology from Florida Atlantic University.  My Masters Thesis was on The Animal-Sediment Relationship s of Shallow Water Lagoons and took me four years to study and wrote.  While working on my thesis, the Smithsonian had a branch at HBOI, so I would ask the scientists there for help in identifying the animals in my study.  Working with these scientists helped me make the connections that eventually get my job with HBOI.

What types of experiences have you had with this job?  I have been fortunate enough to travel the world visiting over 60 countries and collecting thousands of marine samples for biomedical research at HBOI.  I have been able to dive in the Johns0n-Sea-Link submersible to depths of 3000 ft and scuba dive to 300 ft.  My research on the deep water Oculina coral reefs off the east coast of Florida allowed me to use our submersibles as well as lock-out diving to study the growth rate and fauna associated with these deep water coral.  It is very humbling that my research on these reefs helped to establish the Oculina Marine Protected Area which was the first marine protected area in the world to protect deep sea corals, and more recently the 24,000 sq. mile deep sea coral habitat area of particular concern off the southeastern U.S.

What advice do you have for students wanting a career in marine biology?  Even if people tell you there are no jobs in marine biology, find a way to do it!  Follow what you are passionate about.  Get experiences as an undergrad, do internships, build your resume.  Make the effort!  Do things that are going to set you above everyone else.

When looking at graduate school, compare the course offerings of several universities.  Research the Principal Investigators (PIs) at those same schools and make contact with them.  Get a position as a Teaching Assistant or Lab Aide to build on your resume.  All of these things will help you to get the job you want once you graduate.

 

Stephanie Farrington

Ms. Farrington, What is your job title?  I am a biological scientist for John Reed at Harbor Branch Oceanographic Institute.

What type of responsibilities do you have with this job?  I accompany John on his research expeditions and help collect data.  When we return to HBOI, I analyze the data and program everything into GIS maps to give us a visual layout of the different habitats we saw and the species that live there.

What type of education did you need to get this job?  I earned my Bachelors Degree in biology and marine science from the University of Tampa.  My Masters Degree is in marine biology from the NOVA Southeastern University Oceanographic Center.  My thesis was on the Biogeography of the Straights of Florida which gave me a solid background in the marine invertebrates of our region.  This is one of the reasons John hired me to work with him.

What types of experiences have you had with this job?  I have been fortunate to travel in our Johnson-Sea-Link submersible six times, twice sitting up front in the bubble, one dive went down to 1700 feet below the surface.  I have also been on 8 research cruises since I started at HBOI two years ago.  I also had the opportunity to sail on the Okeanos Explorer for three weeks.

What advice do you have for students wanting a career in marine biology?  Marine biology is about collecting and analyzing data and doing research and there is so much cooler stuff in the ocean than just dolphins!

Anne Byford: June 15, 2010

NOAA Teacher at Sea
Anne Byford
Aboard R/V Hugh R. Sharp
June 8 – 15, 2010

Mission: Sea Scallop Survey
Geographic Location: off the coast of New England
June 11, 2010

Weather Data at 1:30pm EDT: Clear and sunny, 14.5˚C
Location at 1:30pm EDT: Lat: 4123.78 NLong: 6656.64 W
Water Depth: 68.2 m

8th Day at Sea

What kinds of things are you going to catch?Part 2 – non-fish along with a few new fishes

There are many more species in the areas than I have listed here; these are simply the ones that I found most interesting. There are several different types of bivalves, sea weeds, etc. Material about the species on this page came from several sources, including the Bigelow and Schroeder’s book referenced in the previous posting. Also, Kenneth Gosner’s A Field Guide to the Atlantic Seashore published by Houghton Mifflin Company in Boston, Ma, 1978. I also used Norman Mein-Koth’s Field Guide to North American Seashore Creatures published by Alfred A. Knopf in New York in 1990.

Sea Stars (aka starfish) – Every third dredge, the contents of the dredge are sampled and the sea stars are separated by species and counted. Most sea stars can regenerate a lost arm, but a few can regenerate an entire organism from the lost arm as well. All sea stars are predators; many species do eat scallops.

Hippasteria phygiana
Hippasteria phygiana

Hippasteria phygiana – a cushion star with a much wider central disk and shorter arms than the other types of sea stars.

Northern Sea Star
Northern Sea Star

Northern Sea Star (Asterias vulgaris) – is one of the more common sea stars found. It can have a radius of up to 20 cm.

Blood Star
Blood Star

Blood Star (Henricia sanguinolenta) – is a thin armed sea star that ranges in color from bright red to orange. This particular blood star shows some aberant regeneration occurring on one arm.

Leptasterias tenera
Leptasterias tenera

Leptasterias tenera – smaller sea stars than the others. They are usually whitish-tan. Some have purple centers and arm bands.

Sclerasteras tanneri
Sclerasteras tanneri

Sclerasteras tanneri – are spinier than the other sea stars seen. They are bright red with thin arms.

Spiny Sun star
Spiny Sun star

Spiny Sun star (Crossaster papposus) – is the only sea star that I’ve seen here with more than 5 arms. It has concentric rings of color radiating from the central disk of the sea star.

Green Sea Urchin
Green Sea Urchin

Green Sea Urchin (Strongylocentrotus droebachiensis) – can grow up to 8.3 cm wide and 3.8 cm high. The shell (test) is usually a greenish color and the spines are all approximately the same length.

Sand Dollar
Sand Dollar

Sand Dollar (Echinarachnius parma) – the common sand dollar. This species does not have openings in the test like the Keyhole type that is commonly found off the coast of the Carolina’s, but does have the flower-like markings on the dorsal side. A great many of these (hundreds of thousands) are found in the dredge on some tows.

Hermit Crabs
Hermit Crabs

Hermit Crabs (various species) – move from shell to shell as they grow.

Northern Lobster
Northern Lobster

Northern Lobster (Homarus americanus) – can grow up to 90 cm in length. Lobsters are scavengers and can be cannibalistic. Claws and tail are highly prized for meat.

Winter flounder
Winter flounder

Winter flounder (Pseudopleuronectes americanus) – are darker than the other flounder. Like summer flounder, they can change color to match the underlying ocean floor. Winter flounder can live up to 15 years. They can reach a maximum size of 64 cm and 3.6 kg, with the average being 31-38 cm and 0.7-0.9 kg. Winter flounder eat mostly small invertebrates, like polychaetes and shrimp and some small fishes. They are preyed upon by cod, skates, goosefish, and spiny dogfish.Winter flounder are the thickest of the flatfish, but are considered over-exploited.

Haddock
Haddock

Haddock (Melanogrammus aeglefinus) – a silvery fish that is dark grey on the dorsal side with a dark patch behind the gills. The largest recorded haddock was 111.8 cm long and 16.8 kg. The average haddock is 35-58 cm long and 0.5-2 kg. Small haddock eat crustaceans, polychaetes, and small fish, while larger haddock eat more echinoderms, but will eat most anything. Predators include spiny dogfish, skates, cod, other haddock, hakes, goosefish, and seals. Haddock aquaculture was begun in 1995. The biomass of haddock was considered below maintenance levels in the late 1990s.

Fawn Cusk-eel
Fawn Cusk-eel

Fawn Cusk-eel (Lepophidium profundorum) – are greenish with light green or tan spots down the sides and, unlike true eels, have pectoral fins. They average about 26 cm in length. They eat sea mice, shrimp, and echinoderms. Larger fawn cusk-eels eat flatfish as well. They are eaten by skates, spiny dogfish, hakes, flounders, and sea ravens.

Winter Skate
Winter Skate

 

 

Winter Skate (Leucoraja ocellata) – large, heart-shaped skate. Like the barndoor skate, winter skates can be quite large, up to 150 cm long. They eat bivalves, shrimp, crabs, echinoderms, and many types of fishes. They are eaten by sharks, other skates, and grey seals. They are considered to be commercially important.

Personal Log

I have to admit, when I first went up to the bridge of the ship, with its wrap-around windows, the first words that came to mind were the lines from Rhyme of the Ancient Mariner (which I may have not remembered entirely correctly)

Water, water everywhere
And not a drop to drink
Water, water everywhere
And all the boards did shrink

At the time that I was there, no land and no other ships were within sight; there was nothing but water and wavelets as far as I could see.We’ve see several ships on the horizon, and two container ships close enough to get a good look at. One of those passed quite close as we had a dredge down.

Jeff Lawrence, June 9, 2009

NOAA Teacher at Sea
Jeff Lawrence
Onboard Research Vessel Hugh R. Sharp
June 8-19, 2009 

Mission: Sea scallop survey
Geographical area of cruise: North Atlantic
Date: June 9, 2009

Weather Data from the Bridge 
S winds 5-10KT
Seas 1-2ft
Barometric pressure 1029mb
Air Temperature 78˚F
Visibility clear
Cold front moving offshore towards us later today, rain expected.

The contents of the dredge are emptied onto the sorting table.
The contents of the dredge are emptied onto the sorting table.

Science and Technology Log 

The sorting table is full of activity as soon as the dredge is pulled aboard the ship. After the crew secure all lines and dump the load the volunteers and scientist begin to sort through the biological that has been brought up from the bottom or the Atlantic Ocean.  Each dredge can bring a varied amount of sea life on the ship.  We are always looking for scallop, yet every third dredge we also sort for crabs. All fish are also sorted and counted.

After all the sorting is done the fish, scallops, and crabs are weighed and measured for length. They are then logged into the onboard computer for analysis of results for each catch.  We are trawling along closed areas for scallops. These areas have been closed for commercial fishing to ensure that the population has time to recover in that area. Scallop surveys are carried out by the R/V Hugh R. Sharp, in three phases during the summer.  Duane and I are on the second leg, which encompasses the area to the east of Delaware, areas around Long Island, and the area around Martha’s Vineyard south of Cape Cod, Massachusetts.

Personal Log 

You may find some interesting creatures during sorting.
You may find some interesting creatures during sorting.

The work aboard the ship can be very long and laborious. The days are long, as each member of the cruise will do a 12-hour shift.  My shift is from noon to midnight.  The conditions can vary greatly during a shift. During the day the sun may be out with light winds and it gets very warm with all the wet weather gear that is worn during sorting. It is necessary to leave the gear on between dredges, since they occur so often. As soon as the sun goes down the temperatures can drop very rapidly.  It is important to keep a hooded sweatshirt and other warm weather gear nearby for the changing conditions.  All gear must be taken with you when you leave your cabin so that the other shift can sleep uninterrupted.  The days are long, with the goal of all who are onboard to get the science completed in a timely fashion.  Keeping a ship stored with goods and running is very expensive so the goal is to get as much science completed in the allotted time as possible.

Question of the Day 
What other bottom dwelling species in the Atlantic are under protection from over-fishing?

Animals Seen Today 
Scallops, eels, crabs, starfish, clams, silver dollars, urchins, goose fish, and many varieties of bottom dwelling fish.

Maggie Flanagan, June 30, 2007

NOAA Teacher at Sea
Maggie Flanagan
Onboard NOAA Ship Oscar Elton Sette
June 12 – July 12, 2007

Mission: Lobster Survey
Geographical Area: Pacific Ocean; Northwest Hawaiian Islands
Date: June 30, 2007

Science and Technology Log – Setting and Hauling Traps 

Maggie Flanagan, scientists, and ship’s crew work together to set lobster traps
Maggie Flanagan, scientists, and ship’s crew work together to set lobster traps

We’ve worked a lot with lobster traps by now, and I’ve had the chance to try every part of the job. The science crew works closely with the experienced fisherman of the ship’s crew – it takes teamwork!  We take turns preparing bait in the early morning.  Thawed mackerel are sliced twice through the middle – be sure to expose the guts which release fluids and oils that are especially attractive to our targets. Later, the traps are set in strings of 8 or 20. Historic data is based on strings of 8, which is why they’re still used even though experience has shown labor is more effective with strings of 20. The traps are all clipped to a gangion, a short line that is spliced (woven) into the length of the ground line (main line of the string) at 20 fathoms (120 feet) apart.  Buoys are clipped in at one end for strings of 8 and at both ends for strings of 20.  A little entertainment comes from the fun names on our buoys which are called out over the radio – Big Momma, 8-ball, Spifferino, Easy Target.  Sadly, we lost the 8-ball float, which is the only gear we’ve lost so far.  Setting baited traps happens from the fantail, or aft working deck, of the ship.  The stackers (scientists on trap duty) lift and shuffle the traps up to the diamond plate (steel non-slip) at the very stern of the ship. A large pallet tub of our line waits there, with eye splices (loops) for attaching gear carefully stacked on a small pipe, keeping the loops ready, in order, and clear from the many coils of line in the tub.   The crew clips a buoy or a trap to a gangion and carefully sends it off the stern.  After beginning the string, the traps slide off on their own with the momentum of the line paying out.

Hauling back lobster traps in the pit aboard OSCAR ELTON SETTE
Hauling back lobster traps in the pit aboard OSCAR ELTON SETTE

Everyone has to be careful to not accidentally step in a loop of line and get dragged off too.  While the traps are going over another crew member, the heaver, manages the tension on the line by guiding it off the stern with a stick in great sweeping arcs.  All the while the Chief Bosun, or supervisor, is in radio communication with the bridge to ensure strings are set at the prescribed depth and location. For our data standards, the traps soak overnight. Hauling back the traps happens in the pit, the low open area along the port side of the ship. The officer at the sticks (steering) operates from a side wing of the bridge, and the Chief Bosun operates the pot hauler, a wheel at the top of a tall J frame that helps pull in the line. As the bridge maneuvers close up to the buoy, a crew member throws the messenger (a 4 pronged type hook) to catch the buoy warp (rope). Once the crew pulls in and unclips the buoy, the ground line is led through the pot hauler, and with a steady hiss the traps are brought up. The pot hauler pauses briefly for each trap to be unclipped, and they’re slid down a table to the crackers (members of the science party) to open. Pretty quickly you open, remove creatures to a bucket, remove old bait, fill new bait, and close the trap. Everything and everyone in the pit gets wet and splashed with mackerel juice.  A bucketeer keeps order of the specimens collected and helps with sharks and eels.  A runner brings the specimens and trap out of the pit. Traps are re-stacked on the fantail and specimens go to the Wet Lab, where the intermediary, assistant, and measurer (more members of the science party) work to catalog them. Overhead, the ground line runs through fair leads (hanging metal circles) back to the pallet tubs on the fantail, where another crew member coils the line back in and stacks the gangion eyes in order.  

The lobsters can surprise you with powerful snaps of their tails.  The assistant has to hold them firmly while the measurer uses a digital caliper to find the length of the carapace (back of the shell) in millimeters. On certain females, we also measure the exopod part of the first left pleopod (appendages under the tail), which can indicate level of maturity.  Females with eggs, spongy masses of tiny round orange or brown specks under the tail, are said to be berried. We also check the lobsters for PIT tags by waving them in front of a scanner – like electronic checkout at the supermarket.  These tags are the same type implanted in pets and if sensed, the scanner shows that lobster’s unique number.  After all the specimens have been recorded, or when a tagged lobster needs to go back in the same quadrant, the intermediary does a dump, releasing them.  Lobsters are dumped through a special cage lowered on the pot hauler, which is designed to deliver them back to the bottom without exposing them to sharks.

Personal Log 

It’s hard to say which job in the lobster survey is my favorite.  Cracking open the traps is certainly the center of the action, but quite a wet, messy job.  Being the measurer makes you feel closely involved with the scientific process, but keeps you working inside.  Stacking empty traps is not as interesting, but happens out in the sun while talking and listening to music. I guess I’m enjoying all the jobs, and certainly learning a lot. Since I began writing, we had to stop our lobster survey for a few days to offer medical assistance to another scientist camping on one of the islands.  It wasn’t life threatening, thank goodness, and we’re back to work soon.