Stephen Bunker: Data Sampling, 23 October 2011

NOAA Teacher at Sea
Stephen Bunker
Aboard R/V Walton Smith
October 20 — 24, 2011

Mission: South Florida Bimonthly Regional Survey
Geographical Area: South Florida Coast and Gulf of Mexico
Date: 23 October 2011

Weather Data from the bridge

Time: 6:23 PM
Wind direction: Northeast
Wind velocity: 5 m/s
Air Temperature: 25° C (77° F)
Clouds: stratocumulus

Science and Technology Log

Collecting data is what science is all about and scientists can measure many different things from the ocean. They generally take these measurements in two different ways: discrete and ongoing samples.

Cheryl is preparing filter samples made from water collected with the CTD. These samples will be frozen and analyzed later in a laboratory on shore.

Discrete sampling means scientists will take samples at different times. When we take measurements at regular intervals, we can compare the data and look for patterns. On the R/V Walton Smith we take discrete samples each time the CTD is lowered. At approximately every two weeks RV Walton Smith will revisit the same location and collect data again. These bi-monthly data samples will let the scientists compare the data and look for patterns.

Remember when we collected weather data in class? We were also doing discrete sampling. We collected weather data from the morning and afternoon each school day. We would record precipitation, wind velocity and direction, air temperature, barometric pressure, and cloud types. Remember the pattern we noticed? When the afternoon temperature was cooler than the morning, we would have precipitation the next day.

Pump and valve system used for water sampling
Here is the pipes, valves and instruments used to take ongoing samples of surface water.

Ongoing sampling is also done on the R/V Walton Smith. On the fore, port (the left front) side of the ship, ocean water is continually sucked into some pipes. This surface water is continually pumped through instruments and water chemistry data is collected.

This continual data sampling is recorded on a computer and graphs can be made for  different characteristics of water chemistry. When continual data is graphed, the graphs have a smoother shape than they would with discrete samples.

Initially I thought that we were just collecting data each time we stopped to lower the CTD. Actually we had been collecting data throughout the entire voyage.

Kuan is monitoring his ongoing data collection of dissolved inorganic carbon.

Kuan, one of the scientists on our cruise, was measuring the amount of dissolved inorganic carbon in the ocean. The process of doing this has typically been a discrete sampling process that involves chemically analyzing water samples, Kuan has developed an instrument that would take ongoing water samples and measure the amount of dissolved inorganic carbon continually.

His instrument would tap into the water pipes above and take ongoing samples throughout the trip. He also wrote a computer program that would record, calculate, and graph the quantity of dissolved inorganic carbon. He even collects GPS data so he can tell where in the ocean his samples were taken. His experiment, I learned, is cutting-edge science or something that hasn’t been tried before.

Personal Log

I hadn’t realized the close connection there is between our earth’s atmosphere and its oceans. I understood how the ocean temperatures and currents  affect our weather systems. But, I didn’t understand how on a micro scale this happens as well. The ocean will exchange (absorb and give off) carbon dioxide and many other molecules with the air.

Why is it important to understand how the ocean and atmosphere interact? We often hear how greenhouse gasses are contributing to climate change. Carbon dioxide, considered a greenhouse gas, is one of the inorganic carbon molecules absorbed and given off by the oceans. When it is absorbed, it can make the ocean slightly more acidic which could harm the micro organisms that are in the ocean food chain

Understanding the interaction between atmosphere and ocean will help us understand why some areas of the earths ocean absorb more carbon dioxide and others don’t.

Barbara Koch, September 28, 2010

NOAA Teacher at Sea Barbara Koch
NOAA Ship Henry B. Bigelow
September 20-October 5, 2010

Mission: Autumn Bottom Trawl Survey Leg II
Geographical area of cruise: Southern New England
Date: Tuesday, September 28, 2010

Me in Front of the Henry Bigelow
Me in Front of the Henry Bigelow

Weather Data from the Bridge
Latitude 41.36
Longitude -70.95
Speed 10.00 kts
Course 72.00
Wind Speed 19.19 kts
Wind Dir. 152.91 º
Surf. Water Temp. 18.06 ºC
Surf. Water Sal. 31.91
PSU Air Temperature 19.80 ºC
Relative Humidity 91.00 %
Barometric Pres. 1012.45 mb
Water Depth 31.48 m
Cruise Start Date: 9/27/2010

Science and Technology Log

I have the privilege of working with the science team on Leg II of the Autumn Bottom Trawl Survey aboard the NOAA Ship Henry B. Bigelow from September 27 – October 7, 2010. We left port on Monday, September 27 and have been conducting the survey in the waters of Southern New England.

Processing Fish
Processing Fish

Fisheries surveys are conducted every spring and autumn in order to determine the numbers, ages, genders and locations of species that are commonly caught by the commercial fishing industry. The surveys are also carried out to monitor changes in the ecosystem and to collect data for other research. The scientists working on this leg of the survey are from Alaska, Korea, and New England. This ship works around the clock, therefore, we are divided into a day watch and a night watch, and we are all under the direction of the Chief Scientist, Stacy Rowe. I’m on the day watch, so my team processes fish from 12:00 noon until 12:00 midnight.

In order to collect a sample of fish, our ship drags a net for twenty minutes in areas that have been randomly selected before the cruise began. After the “tow,” the net is lifted onto the boat, and the fish are put in a large area to await sorting. The fish move down a conveyor belt, and we sort the fish by putting the different types into buckets and baskets. Once, the catch has been sorted, we move the buckets onto a conveyor belt, which moves them to stations for data collection.

Measuring fish
Measuring fish

Two people work at a station. One is a “Cutter” and the other is a “Recorder.” The cutter measures the length and weight of the selected species of fish on a “fishboard.” This data is automatically entered into the computer system. Depending on the species, the cutter might also be required to take an age sample or a stomach sample. Age is determined by collecting scales or an otolith (sometimes called an ear bone), depending on the species. The cutter removes these and the recorder puts them in a bar-coded envelope to send back to the lab for later study. The cutter also removes the stomach, cuts it open, and identifies what the fish has eaten, how much, and how digested it is. All of this information is entered into the computer for later analysis.

The information gathered during this cruise will give NOAA and other organizations valuable information about the health of the fish species and their ecosystem.

Personal Log

I arrived the night before we left port, and I was able to spend the night on the boat. My stateroom sleeps two people in bunk beds, and each person has a locker in which to stow our belongings. The stateroom also has a bathroom with a shower. Right across the hall is the scientist’s lounge. It has two computers, a television, many books, and games. This is where we sometimes spend our time while we are waiting for a tow to come in.

We spent much of the first day waiting to leave port. Once underway, some tests were conducted on the nets, and my Watch Chief showed me pictures of some of the common species we would see, explaining how to identify them. We began processing fish today. The first time the fish came down the conveyor belt, I was nervous that I wouldn’t know what to do with them. It worked out fine because I was at the end of the conveyor belt, so I only had to separate the two smallest fish, Scup and Butterfish, and Loligo Squid. After my first try at processing, I felt much more confident, and I even was able to tell the difference between Summer and Winter Flounders. One faces to the right and the other faces to the left!

Peggy Deichstetter: Day 4 September 1

NOAA Teacher at Sea: Peggy Deichstetter
NOAA Ship Name: Oregon II
Mission: Bottom Longline Survey 2010
Geographical area of cruise: Gulf of Mexico

Me on the deck
Me on the deck

Day 4 Sept . 1

We are about an hour away from out first data collection area. This morning just before dawn I got a tour of the bridge. The CO showed my all the computers that keep track of where we are. I learned a lot, not only about the bridge but also about careers in NOAA.(National Oceanic and Atmospheric Administration) . NOAA is made up of several parts, the CO and I talked about the oceanic parts; the officers and crew who run the ship and the scientists. The officers follow the same rules as the military. If you are in the Navy you can transfer directly into this division.

Navigational Computers
Navigational Computers

The scientists do the actual research designed by NOAA to answer questions about the ocean. In this cruise we are counting, tagging and releasing shark. This will tell us about how many sharks are in this area at this time of year. NOAA has collected data for twenty year so they will be able to tell the health of the shark population.

To help collect information of the effect of the oil spill we are also doing water analysis and plankton tows.

After lunch we were taught how to do a plankton tow. I have done numerous plankton tows in my life but never on this scale. I used all the skills that I learned when I did research in the Arctic except on a much larger scale.

Julianne Mueller-Northcott, May 11, 2010

NOAA Teacher at Sea
Julianne Mueller-Northcott 
Onboard R/V Hugh R. Sharp
May 11 – 22, 2010

University of Delaware R/V Hugh R. Sharp
Mission: Sea Scallop Survey: Leg III
Port of Departure: Lewes, Delaware
Date: May 11, 2010

Weather Data from the Bridge
Overcast, rainy, in the 50s

Science and Technology Log – Data Collection/Sampling Methodology
For NOAA’s scallop survey, it is divided into three different legs or cruises, each sampling a different area along the east coast.  This cruise that I am on is the first in the series.  During this time, since we will be working around the clock, we will probably do somewhere between 150-200 dredges and the NOAA team will sample about 500 total for the season. But how do scientists determine where to dredge?  How can they be sure that the sites that are sampled will give them an accurate representation of the number of scallops on the sea floor?  To determine where to sample, scientists use the Stratified Random Sampling Design.  This is the method for determining the average number of an animal in a given area. This sampling technique is based on the fact that the scallop population density depends on the ocean depth.  Scallops like to hang out in 50-100 m of water.  Scientists break up the coastline that their studying into different “strata” or quadrants. And then instead of a totally random sample in a given area, the stratified random sampling design uses a computer to select more collection sites in the depths where you would be likely to find the most scallops, since that is what scientists are interested in.

Scallop Fisheries

The US scallop fishery is an economically important fishery, maybe second only to the lobster industry in the Atlantic. One question that one of my students asked was, “Is the scallop population growing or is it in danger?” I asked our chief scientist that question this afternoon.  His response was very promising, that the scallops are doing very well.  Part of the reason for their success is due to the regulations that are set in place, the same regulations that are based on the data collected by this trip.  One type of regulation that has been helpful is the temporary closure of certain areas.  These closures give scallops in a particular area a chance to grow.  So if during a scallop survey cruise, scientists notice a lot of young scallops in a given area, that data will get reported an maybe lead to the temporary closure, meaning that you can’t fish for scallops there for a couple of seasons.  Then after some time for the animals to grow, the area will be reopened.  By rotating these closed areas, it allows the time necessary for population growth.  Astrid B. asked the following question, “Does the dredge hurt the ocean bottom?” Our dredge is fairly small, about eight feet across.  But a commercial fishing boat has two dredges that are about 15 feet wide that go down at the same time.  And at a given time, there might be as many as 500 boats out fishing for scallops.  Before and after photographs have shown that the dredges do impact the bottom.  It works to flatten everything in its path, including living organisms.  It also affects an important habitat.  Fish species like cod like to hang out around the nooks and crannies that are created by benthic creatures, but without that important living structure, the cod population doesn’t have the habitat it prefers (which may be an explanation for why that population has been slow to recover).  While more research needs to be done to find out how long it takes for the substrate to recover and return to its pre-dredge state, dredging does have some pretty clear impacts on the sea floor habitat.

Brandon O had a fun question, “What is the funniest thing that got brought up by the dredge?” The chief scientist said that once they brought up pieces of an airplane in a dredge.  I asked if it hurt the dredge and it didn’t because the plane was made of light aluminum.  And then he said that they have also found mammoth teeth. That is very cool!  A long time ago this whole area was not covered by water, but instead it was land for wooly mammoths to walk over. I think this is especially neat after just seeing lots of skeletons of mammoths at the Natural History Museum during our trip to New York City over vacation. I can’t wait to find out what will be the most interesting thing we’ll find during this trip!

Personal Log
We just officially set out to sea! It was a long day waiting for all the preparations to be finalized and for the water to be high enough so we could leave port.  It is a chilly day, with the wind blowing on the ocean and a little drizzle coming down—but so exciting to be moving and heading out!  Lots of students had many questions for me about food, especially considering my mantra, “Fish are friends, not food.” So far so good, lots of chicken, pasta and the most unbelievable snack cabinet—featuring all sorts of goodies that we never keep at home (Oreos, cheese-its, candy bars, soda).   And then today, I saw for the first time–the ice cream freezer.  And entire freezer, dedicated to the storage of frozen treats—what a beautiful concept! As it turns out, there used to be a treadmill on the boat, but they had to move it off to make room for the ice cream.  I like where their priorities are and it is clear that I won’t be going hungry!

Ginger Redlinger, July 29–31, 2007

NOAA Teacher at Sea
Ginger Redlinger
Onboard NOAA Ship Rainier
July 15 – August 1, 2007

Mission: Hydrographic Survey
Geographical Area: Baranof Island, Alaska
Date: July 29–31, 2007

Weather log on the RAINIER.  Data is gathered, then entered into a database.
Weather log on the RAINIER. Data is gathered, then entered into a database.

The RAINIER started its work in South East Alaska in April of this year. Four months and hundreds of nautical miles later it was time to leave: Juneau, Ketchikan, Sitka, Baranof Island, and the Gulf of Esquibel. Three or four research boats were in the water everyday rain or shine, calm or rough water, gathering data. At night, crews’ maintained watch, reviewed data, and planned for the next day’s work. Equipment was checked to ensure everyone’s health and safety.  Quality control ensured that the data gathered met NOAA’s expectations. Now it is time to end the Alaskan part of their work and move to their next working location.

While traveling from South Each Alaska to Washington I reflected on the most memorable parts of the journey.  I immediately remembered the compliments from pleasure boaters and fishermen about NOAA’s work. Next I thought about the ease at which the crew safely delivered and returned their equipment and crew to and from the ship each day.  Then I thought about the NOAA resources I learned about as I studied information about hydrography, technology, satellites, weather, and tides.  And how could I not mention the food – it was great. Good food compensates for the sacrifice of being away from home for such a long time.

Water from the Fraser River (green) and the southern end of  Georgia Strait waters.
Water from the Fraser River (green) and the southern end of Georgia Strait waters.

There would be a short break between the end of this voyage and the start of the next, some would remain on the ship, and for others it meant being “at home” for the first time since April. This is part of the sacrifice that mariners, and those who explore the oceans make.  As we traveled closer to home many off-duty crewmembers gathered on the fly deck to see home slowly approaching from the distance.  They shared stories from the last four months and recalled the moments of laughter on “the big white ship.” After traveling through Canadian waters, around Vancouver Island and into Puget Sound, people began to gather in earnest of the desk. At first I thought it was because we were taking a picture for a “NOAA 200th Anniversary Postcard from the Field,” but many remained on deck. Many were anxious for the first glimpse of their families and their homes.  Many of their family members arrived at the Ballard Locks – waving and communicating their excitement about the reunions that would happen in a few short hours.

Mt. Rainier and Seattle in the distance.
Mt. Rainier and Seattle in the distance.

The sun is setting as we traveled past the many marinas for all types of marine vessels, houseboats, and dry-docks. As we passed through crewmembers neighborhoods the fading sunlight was replaced with light shining in their eyes as they talked about the view from their windows, their favorite neighborhood haunts, and local treats that mean “home.” As we turn toward the waters that lead to downtown Seattle the crew on the fly deck is silent. The last embers of sunlight are reflecting on the downtown Skyline, it is spectacular.  We turn away from downtown and travel through the Fremont Cut.  Thank goodness for the navigational skills of this young and talented team – the water traffic from Seattle’s SeaFair was busy. Once we arrived at the NOAA Western Regional Center in Sand Point, CO Noll’s work was done.  He had trained his crew to successfully navigate the ship and complete the mission.  We are all home; the final navigational command is given.

Rear Admiral De Bow handing the Command Coin to Commander Noll
Rear Admiral De Bow handing the Command Coin to Commander Noll

“All Engines Stop” “All Engines Stop, Aye. – All Engines Stopped” “Very Well.” Rear Admiral De Bow was on board to congratulate him, and pass the time-honored command coin.

I hate to admit it, but like a kid at camp leaving a new set of friends knowing that I most likely will not see many of them again, I feel sadness. The memories and lessons will remain.  What a great adventure for a teacher, what a great experience for those who work on the ship, and what a great service provided to those who depend on navigation for commerce, recreation, and those who seek a greater scientific understanding of the earth and how it changes. I can’t wait to share it all with my students and colleagues!!!!

The Seattle skyline at night
The Seattle skyline at night