Jenna Cloninger: CTDs and Cephalopod Central, June 20, 2025

NOAA Teacher at Sea

Jenna Cloninger

Aboard Bell M. Shimada

June 11 โ€“ June 26, 2025

Mission: Integrated West Coast Pelagics Survey (Leg 1)

Geographic Area of Cruise: Pacific Ocean, California Coast

Todayโ€™s Date: June 20, 2025

Track the Ship: Bell M. Shimada

Weather Data Snapshot: 9:54am, Pacific Daylight Time

Currently, the air temperature is 58ยฐF (14ยฐC) with a wind speed of 23 knots and a wave height of 9 feet. Not only are the seas rough offshore, but the wind is making it very chilly to work outside. Luckily, we have some gear that keeps us warm for times when we need to be outside for extended periods. The sky is clear, and the sun is shining, so I am counting my blessings despite the cooler temperatures.

two women bundled up for outdoor work in large red "float coats" and beanies - they are striking somewhat silly poses for the camera. Jenna (left) is wearing a Teacher at Sea beanie.
Melissa (left) and myself (right) preparing to go outside for UCTD deployment.

Science and Technology Log

Itโ€™s been an exciting week regarding technology! I had the opportunity to help prepare a CTD (a piece of equipment mentioned in a previous blog post) for deployment as well as the opportunity to observe a UCTD being deployed. A CTD (Conductivity, Temperature, Depth) is a tool that measures how salty and warm the water is at certain depths . For larger CTDs, the ship comes to a stop, scientists then lower the CTD using a cable, and it collects data as it goes down. A UCTD (Underway CTD), however, is a smaller version that can be used while the ship is moving. It’s dropped into the water and pulled behind the ship, collecting data as it sinks. This allows scientists to gather information more quickly and without stopping the ship. Both tools are important for helping scientists understand seawater conditions and how they change based on depth, time of day, season, location, etc.

Elias stands, and Jenna kneels, near a large apparatus consisting of a white metal frame, a ring of gray water sampling bottles, and a scientific probe. Jenna is wearing a hard hat and doing something (stringing a wire?) on the CTD as Elias looks on.
Elias and myself preparing the CTD for deployment.
Jenna, wearing a red float coat and Teacher at Sea beanie, stands on deck and holds what appears to be a metal tube in both hands for a photo.
Photo of me with UCTD equipment.

In other news, we have run into several different cephalopods this week. Cephalopods are part of a group of marine invertebrates that includes octopus, squid, cuttlefish, and nautilus. They are known for having large heads, arms or tentacles, and relatively high intelligence when compared to other invertebrates. In our case, we caught a few different kinds of squid, a few small octopus, and a nautilus in our trawling net. I was particularly excited to see the nautilus, because I had never seen one in person before!

close up view of a paper nautilus against a white background; we can see the curved shell with sawtooth bumps, and the eye of the nautilus peeking out the opening of the shell
Paper Nautilus
a squid in a green plastic basket
Robust Clubhook Squid
smaller squid photographed against a plastic blue background
Market Squid
close-up view of a small octopus
Tuberculate Pelagic Octopus
three octopus in messy piles in a green plastic basket
A group of three (3) Seven-Armed Octopus.

As you can see, cephalopods come in many different varieties. I enjoy teaching about them in the classroom because of their unique evolutionary features, like chromatophores, which are specialized cells that enable cephalopods like squid, cuttlefish, and octopuses to rapidly change color. It should also be noted that cephalopods are part of the phylum Mollusca, just like the abalone that I discussed in a previous blog post. In general, I really love teaching about mollusks in the classroom because of the amount of diversity that we see within the phylum.

Personal Log

Speaking of squid, I tried calamari (fried squid) for lunch yesterday. I typically do not eat seafood of any kind, but when youโ€™re on a ship, the food options may not always be what you want them to be. (Thatโ€™s not to say that the food isnโ€™t amazing, because it is. I am simply a picky eater.) Letโ€™s just say that I will not be eating any more squid any time soon. (But I will still pose for pictures with them!)

a gloved hand holds out a very round squid for a close-up photo
Me, holding a Sandpaper Squid.

I also got to photograph a sunrise on the Pacific! The mornings have typically been hazy, or the boat has been facing the wrong direction for me to view the sun properly, but I finally managed to catch the sunrise while out on the back deck after processing our last catch of the night. Seeing the sunrise and sunset on the Pacific are two goals that I had when I started this journey. Unfortunately, because of my night shift hours, I do not think I will be able to catch a sunset any time soon. Perhaps on the last night of the cruise, I will stay up past my โ€œbedtimeโ€ and wait for the sunset!

view through the A-frame on the aft deck of the sun rising over the ocean. seabirds trail the boat, silhouetted against the sun. to the right of the deck, a group of four crewmembers wearing personal flotation devices and hard hats work to untangle a trawl net.
Sunrise on the Pacific ocean from the fishing deck of NOAA ship Bell M. Shimada.

On another note, it has been 10 days since I left Georgia and arrived on the west coast, and I am starting to feel the effects of working such long days. I miss my family, and I miss the comfort of home. That is not to say that I am not enjoying this learning experience, because I am. But I want people to know that individuals who conduct research on scientific vessels like NOAA ship Bell M. Shimada are some of the most hard-working people I have ever met. I get to go home after 16 days and return to my own house with my own bed and other creature comforts. Some people are on this ship for several legs between now and September, and if theyโ€™re not at sea, theyโ€™re at their respective places of everyday work, such as an office or science center. Itโ€™s quite admirable, and humbling, to see how dedicated these people are to marine science and to the well-being of our oceans. It makes me want to be a better teacher so that we have people in the future who love and care for the ocean and are interested in preserving it as well.

view through a porthole window of a churning ocean
A view of the rough seas from my stateroom.

Did You Know?

Letโ€™s talk about butterfish! Off the Atlantic coast, there is a commercial fishery for Atlantic butterfish. Thereโ€™s another species of butterfish known as the Pacific butterfish that is quite common off the coast of California even though itโ€™s not fished commercially in this region. I have decided that butterfish are the cutest fish that we have caught in our net so far! I love them so much that my teammates toss me all the butterfish when we are sorting our catch, and I make excited noises when I find them buried amongst our anchovies, mackerels, and sardines. In honor of the humble butterfish, I dedicate this Did You Know? section to them!

a hand holds a fish up to a laminated photo of a group of fish (labeled Peprilus simillimus, Pacific butterfish) mounted on a metal wall
A Pacific butterfish from our catch being compared to an image of the species.

According to NOAA, butterfish are small, round fish that are bluish on top with silvery sides and belly. They have small mouths, blunt noses, and grow to about 6โ€“9 inches long, though some can reach 12 inches and weigh up to 1.25 pounds. Butterfish grow quickly but donโ€™t live long; most only live about 3 years and can reproduce by age 1. They spawn in the summer (June and July) and swim in loose groups, feeding on small invertebrates. Why do we care about butterfish? Many animals, like bigger fish, marine mammals, and seabirds, eat butterfish. That means that they are a humble yet important piece of a healthy and balanced ocean ecosystem.

an orange-gloved hand holds three fish by their tails, splayed out like flowers, above a pile of smaller fish (probably anchovy)
A bouquet of butterfish, my new favorite fish.

 

Allison Irwin: Art and Science, July 22, 2019

NOAA Teacher at Sea

Allison Irwin

NOAA Ship Reuben Lasker

July 7-15, 2019


Mission: Coastal Pelagic Species Survey

Geographic Area: Northern Coast of California

Date: July 22, 2019

Weather at 1200 Pacific Standard Time on Monday 22 July 2019

When I walk outside onto the deck, the sky is a stunning shade of blue matching the color of Frost Glacier Freeze Gatorade. The sun is warm against my skin โ€“ Iโ€™m finally not wearing a jacket โ€“ and bright, but not so bright that I have to squint against the reflection of the water. I put my sunglasses on anyway since the polarized lenses help me see more defined colors in bright sunlight.ย  The instruments show 15ยฐ Celsius right now with 25 knot winds. The horizon has a funny haze along its whole length even though the sky above me is absolutely clear. When I look over the long distance, Iโ€™m seeing cumulative aerosols โ€“ dust, water vapor, and other particles suspended in the air to form a haze along the horizon. I canโ€™t see it directly above me even though it must be there.

PERSONAL LOG


One of the most beautiful things Iโ€™ve seen this whole trip, even when you take the coastline into account, are the squid. Never thought Iโ€™d write that sentence. But they sparkle and change colors! Last week we found a tiny octopus in something called a bongo tow (Iโ€™ll explain that in the science section). That little critter was even more awe inspiring. It had big turquoise eyes that reminded me of peacock feathers.

Juvenile Octopus
Juvenile Octopus – Species Unknown

While I was in Newport, Oregon before the ship left, I was walking around Newport Marina and found a couple of guys painting a mural. The one who designed the mural is an art teacher at Newport High School. We started talking about his mural and the NOAA Teacher at Sea program. In addition to his career as an art teacher, Casey McEneny also runs his own art studio called Casey McEneny Art. The other guy helping him, Jason, has an art studio called Jay Scott Studios.

By painting the commissioned mural, he was connecting his career with his love of art and his community. His son even participated in the process by filling in a small portion of the mural while Casey worked on outlining the rest of it. Later heโ€™ll go back and overlay the mural with color so it pops off the wall.

  • Casey McEneny with his son
  • Full mural
  • Jason from Jay Scott Studios


THE SCIENCE


Ok, so the bongo tow. Do you remember as a kid (if you were a kid in the movies) when you used to run through fields of flowers catching butterflies in a butterfly net? Iโ€™m imagining a 6 year old girl with a flowing sundress. Well, take two oversized white butterfly nets and attach them to a metal frame that look like spectacles. Each hoop in this frame has a 71 centimeter diameter. These mesh nets each have a codend just like the trawl nets, except these codends are less than 1 foot long and are made out of extremely fine mesh. Theyโ€™re designed to catch zooplankton โ€“ copepods, krill – and other smaller things that the net collects while traveling through the water column.

Bongo Net Ready to Deploy
Bongo Net Ready to Deploy

The juvenile octopus we found in the bongo tow last week was too difficult to identify at that young stage. It was only about 1 inch long. I searched through their identification books in the lab and tried to figure it out, but even the scientists said that the science community just doesnโ€™t know enough yet about cephalopods (think octopus and squid species) to identify this beautiful creature until itโ€™s an adult. We do know, since it has 8 arms and a fused mantle, that itโ€™s at least an octopus and not a squid. Squid are not octopods, theyโ€™re decapods โ€“ in addition to the 8 arms they also have 2 long tentacles.

There are two species of octopus living in this area that look very similar even as adults. They are the Enteroctopus dofleini (Pacific Giant Octopus) and the Octopus rubescens (East Pacific Red Octopus). As adults, theyโ€™re both a dark red color almost like rust or brick. The artist I mentioned earlier, Casey, included a Pacific Giant Octopus in his mural at Newport Marina. But those are just two of many, many species of octopods in this area. Our little guy is probably neither of those. Still, Iโ€™m hoping it is a baby Octopus rubescens since they have a high density of chromatophores that make them sparkle!

Pacific Giant Octopus
Pacific Giant Octopus from Casey McEneny’s Mural

The chromatophores are cells that both reflect light and contain different colors (pigment). They come in all different patterns and are distinct enough to use as identification tools for different species. They can be individually large or small and show up either in dense patches or scattered like freckles. Octopus and squid species contract and expand these special cells to change color based on necessity, if they need camouflage for example, or itโ€™s thought that they even use color to communicate their mood. Iโ€™ve seen them sparkle in brilliant colors like a kaleidoscope but thatโ€™s probably, unfortunately, an expression of their agitated state since weโ€™re catching them.

While thereโ€™s no way to tell exactly what theyโ€™re thinking, it is well known that octopus species are highly intelligent compared to other animals found in the ocean. They are curious, they sometimes play pranks on divers, and they seem to be more intentional than fish in their actions. Their intelligence made me think theyโ€™d have long lives, that they gained experience and personality over time, but octopus species typically only live a few years. Females will usually only reproduce once in their short life spans.

TEACHING CONNECTIONS


There are so many ways to connect cephalopods to the classroom! First, research shows octopus species may plan ahead and that they can learn and adapt to their surroundings. Theyโ€™re problem solvers. Theyโ€™re curious by nature. How often do I wish my students were more curious about learning and literacy! By reading about the resiliency and learning capabilities of an octopus, maybe it will inspire my students to see themselves as more capable of persevering through difficult challenges and adapting their learning styles to meet the needs of different disciplines. I can drive home the point that studying for biology might not look the same as studying for their upcoming test in civics, and that the more academic learning tools they have to employ from their toolbox, the more theyโ€™ll be able to master this whole โ€œbeing a studentโ€ thing.ย  If youโ€™re at a loss for how to bring an octopus into the classroom, try starting with this activity from the NY Times Learning Network called Learning with โ€œYes, the Octopus is Smart as Heck. But Why?โ€.

Casey, the art teacher from Newport High School, shared an interesting activity from his art class. He recommends using images of zooplankton under microscope (we found plenty of these in our bongo tow!) to inspire abstract art projects similar to how Carl Stuwe intertwined science with art at the beginning of the 20th century.  English teachers could share the same images to get students writing creative fiction or a mini lesson on imagery.  Science and art provide a natural blend and plenty of opportunities for teachers to collaborate and combine our instructional force so we can integrate important concepts across the disciplines.

As a literacy teacher, I canโ€™t help but think about how awesome it would be to teach my students the Latin prefixes and root words that are commonly used to name sea creatures. Names like Doryteuthis opalescens, Rossia pacifica, Octopus californicus, or Thysanoteuthis rhombus.  Then, let them loose to name, design, describe, and share their own octopus species โ€“ yet to be discovered! While Iโ€™m sure their imaginations would come up with some elaborate ideas, few things are ever as fantastical as reality. Check out the Vampyroteuthis infernalis living in the deep, dark depths of the ocean.

Vampire Squid
Vampire Squid Source: https://marinebio.org

We wouldnโ€™t have found this creature or been able to capture its image without technology like Remotely Operated Vehicles (ROVs) and underwater submersible vehicles. There are clearly ways to link instruction to technology courses in addition to art, science, and literacy. Maybe students could take a sea creature that already exists and use mixed media to present an artistic representation of it like the Oregon Coast Aquarium did for their Seapunk exhibit. They could get their mixed media supplies from scrap leftover in the tech wing.

TEACHING RESOURCES

Jennifer Fry: March 17, 2012, Oscar Elton Sette

These crustaceans are sorting into a tray then measured for length (mm), volume (ml), and mass (g).

Mission: Fisheries Study
Geographical area of cruise: American Samoa
Date: March 17, 2012

Pagoย Pago, American Samoa

Cobb Trawl Day 6

Location: Wet Lab

Poetry into the Wee Hours of the Night

Here’s the data from Cobb Trawl Day: 6.1 ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย ย  ย Total mass of trawl: 490 g

Name of fish: Numbers Count Volume (milliliters) Mass (grams)
Myctophids 124 140 150
Non-Myctophids 58 80 75
Crustaceans 14 negl negl
Cephalopods: 10 30 30
Gelatinous zooplankton 59 104 100
Misc. zooplankton n/a 60 97

Animals seen:

Lizard fish

Light fish

Mantis shrimp

Ctenophore/ comb jellies

Stomatopod

This coronet fish, in its larval form, was found in the Cobb trawl net.

The snipe eel is one the longer fish we caught measuring 150 mm.

The snipe eel mouth is shown close-up.

Scientists sort the nightly catch after each Cobb trawl. Trays are used to divide into each catagory: myctophids, non-myctophids, crustaceans, cephalopods, gelatinous zooplankton, and misc. zooplankton

Cob Trawl Day 6.2 :Total Mass 1035 g

Name of fish: Numbers Count Volume (milliliters) Mass (grams)
Myctophids 385 300 232
Non-Myctophids 51 60 70
Crustaceans 17 6 7
Cephalopods: 32 26 55
Gelatinous zooplankton 122 400 405
Misc. zooplankton n/a 240 225

Animals seen:

Trumpet / coronet fish

Snip eel

Salps

Balloon squid

Fulmar bird

This fulmer bird landed on the deck of the ship during nighttime Cobb net trawling.

Poetry into the Wee Hours of the Night: A collaborative effort:

“The Cobb Trawl Net”ย / With my week nearlyย over workingย  on the Cobb Trawl Net, I asked the scientists to join me in writing some scientific poetry about the operation.ย ย  The Cobb Trawl Netย operation is overseen by John Denton and Aimee Hoover. The netย is brought out of the waterย twice during the wee hours of the night, using a large noisy winch which certainly disturbs the slumber of those light-sleepers on the ship.ย  Coinciding with the Cobb Trawl Net activities areย  nightly Plankton Tows.

ย “I Wander Lonely as a Plankton” and “Plankton Mother” ย honor the various types of plankton and microplastics that Emily Norton and Louise Giuseffi are studying.ย  We have been towing in different regions of American Samoan seas.ย  One area is called 2% Bank.ย  The other banks are called Northwest Bank andย  Southbank.

“Myctohpids”ย / Since most of the bio-mass of the ocean is taken up by the little myctohpid fish,ย they are represented withย an acrostic poem.ย  The poems show a passion for science and the research being conducted here in American Samoa.ย  I truly thank these scientists, John, Aimee, Emily, and Louise for their teachings, patience, and sheer enthusiasm for their scientific projects.

The Cobb Trawl Net

inspired byโ€ The Fogโ€ by Carl Sandberg

The trawl net comes in on thundering howl

The great black maw

Grinding and snarling brings in its folded catch,

The oceanโ€™s toothy offering from the liquid, teeming abyss.

I Wander Lonely as a Plankton

Inspired by โ€œI Wander Lonely as a Cloudโ€ by William Wordsworth

I wander lonely as a copepod

That floats high and low in the sapphire blue water column ofAmerican Samoa

When all at once I saw a school

A host of dog tooth tuna

Along the 2% Bank

Beneath the NOAA ship OscarElton Sette

Thunniform undulation and escaping through the gently rolling waves.

Plankton Mother

ย 

Meticulously, she guards her catch

A treasure trove of tiny beasts

Carefully each dish is filled for observation.

Peering through the powerful microscope the

Blinking, pulsing Cephalopods, the cobalt Copepods, and spiral, conical Pteropods

So fragile to the touch

Tweezers carefully coax each delicate specimen into position

Checking for morphological traits

Does it haveโ€ฆ

โ€ฆMysterious dark organ on its tiny body?

โ€ฆPointy sword-like structure on its rostrum?

The newly found charge is preserved in a viscous solution

Our link to planktonโ€™s DNA

ย transcriptome: all our DNA used to make proteins,

the building blocks of life

lifeโ€™s basic units for construction

Myctophids

ย 

ย Multitudes ofย  photophores, cup-shaped light emitting organs of epidermal origin.ย  Many manyย  millions ofย  blinking dots

Yellow irises lookย  with dreamy eyes like aย  glazed over donut.

Clues to many different species found in the mesopelagic layer of the deep, ebony ocean.

The ctenoid scales possessing sharp, spiky spines

Out of the obsidian shoots the silver sprites, the beautiful slender fish

Prickly long-tailed myctophids with their stern-chasers, supracaudal/infracaudal luminous organs

Hungry for krill, small crustaceans, copepods and other planktonic creatures

Iridescent

Densly packed balls of gleaming, pulsing Actinopterygians A.K.A.ย  Actinops

Schooling,ย  synchronistic swimmers, tiny voices of light circumgloabally distributed around the world, cosmopolites.

A collaboration by:

John Denton, Emily Norton, Aimee Hoover,ย  Megan Duncan, Louise Guiseffi,ย and Jennifer Fry

Jennifer Fry: March 15, 2011, Oscar Elton Sette

NOAA Teacher at Sea
Jennifer Fry

Onboard NOAA Ship,ย Oscar Elton Sette

March 12 โ€“ March 26, 2012

Mission: Fisheries Study
Geographical area of cruise: American Samoa
Date: March 15, 2012

Pagoย Pago, American Samoa

Science and Technology Log:

Nighttime Cobb Trawling : Day 4

We began the trawling around 8:30 p.m.ย  The data we collect tonight will replace the previous trawl on day 2 which was flawed in the method by which the experiment was collected. The Day 2 experiment was when the winch became stuck and the trawl net was left in the water well over 2 ยฝ hours, long past the 1 hour protocol.

Hereโ€™s is what the science team found.

Tonight the trawl nets went into the ocean and were timed as all the other times.

During the sorting we found some very interesting species of fish which included:

  • Pyrosomes: chordate/Tunicate
  • Two Juvenileย cow fishย (we placed them into a small saltwater tank to observe interesting species caught in the net.)

This is a great place to make further observations of these unique animals.

The data collected included:

Name of fish: Numbers Count Volume (milliliters) Mass (grams)
Myctophids 120 700 650
Non-Myctophids 148 84 115
Crustaceans 77 28 40
Cephalopods: 16 64 50
Gelatinous zooplankton 71 440 400
Misc. zooplankton n/a 840 900

The Cobb trawl net was washed, rinsed and the fish ย strained through the net. They were then brought inside the web lab for further sorting.

The white-tailed tropic bird is a regular visitor to the South Pacific islands.

We were close to finishing the sorting, counting, and weighing when suddenly we heard something at the back door of the lab.ย  Fale, the scientist from American Samoa went to the door and proceeded to turn the latch, and slowly opened the door.ย  There huddled next to the wall, near some containers was a beautiful black and white Tropic bird, a common bird of this area.ย  Its distinctive feature was the single white tail feather that jutted out about 1 foot in length.ย  He looked just as surprised to see us and we were of him.ย  He did not make a move at all for about 10-15 minutes .ย  We took pictures and videos to mark the occasion, yet he still didnโ€™t budge or act alarmed.

With a bit more time passing, he began to walk, or more like waddle like a duck. His ebony webbed feet made it difficult to maneuver over the open slats in the deck.ย  He attempted flight but appeared to get confused with the overhanging roof.

I quickly found a small towel and placing it over his head, gently carried him to a safe spot on the aft deck where he would have no trouble flying away.

The time was about 2:00 a.m. when we were distracted by the shipโ€™s fire alarm, andย  we quickly reported to our muster stations.ย  Luckily, there was no fire andย  we returned resuming our trawl data collection.ย  Upon reaching the wet lab, we noticed at the stern of the ship, our newly found feathered friend had flown off into the dark night.

It was a great way to end our night withย  research and early hour bird watching.ย  How lucky we all are to be in the South Pacific.

Animals Seen:

Ppyrosome

Pictured here is a Pyrosome which many came up in our Cobb net.

Cow fish

Our trawl net caught three juvunile cow fish specimans which were quickly placed in our observation tank for further study.

Tropical bird

The Tropic bird, with its distinctive long tail feather, is common in the South Pacific.