Christopher Tait: “What Do They Do When Out to Sea?” March 18, 2017

NOAA Teacher at Sea

Christopher Tait

Aboard NOAA Ship Reuben Lasker

March 21 – April 7, 2017

Mission: Spring Coastal Pelagic Species Survey

Geographic Area: Pacific Ocean from San Diego, CA to San Francisco, CA

Date: Saturday, March 18, 2017

Weather Data

Current weather at home in Wingdale, New York is 39F and we just had 3 snow days in a week after 24 inches of snow.

Science and Technology Log

I will be joining the team aboard the Reuben Lasker to do the Spring Coastal Pelagic Species Survey.  The goal of the survey is to determine the distributions and abundances of the planktivorous (plankton eating) fish such as Pacific sardine (Sardinops sagax), Northern anchovy (Engraulis mordax), jack mackerel (Trachurus symmetricus), and the Pacific mackerel (Scomber japonicus) in the California Current between San Diego and Cape Mendocino, California.  This will be achieved using multi-frequency acoustic backscatter (sonar), sampling the fish with trawls, sampling spawned fish eggs in the water column, aerial surveys using UAS (unmanned aircraft system), sampling plankton, and measuring the abiotic environment such as temperature, salinity, oxygen levels.

Personal Log

TaitFebruary 1st I walked into work, opened up my email and saw a message from NOAA. I opened the message and saw “On behalf of the National Oceanic and Atmospheric Administration’s Teacher at Sea Selection Committee, we are pleased to inform you that you were selected to participate in NOAA’s Teacher at Sea (TAS) Program – 2017 Field Season!”  I couldn’t believe what an opportunity to learn from scientists and to enrich the classroom experience for my students!  I teach AP Environmental Science at New Fairfield High School, in Connecticut, Biology at Western Connecticut State University, and teach field research and study the community structure of fish in Candlewood Lake, CT with Project CLEAR supported by the Candlewood Lake Authority and EdAdvance.

Growing up my family would go to Cape Cod, Massachusetts to visit my uncle.  I remember always feeling this sense of awe about the ocean as my uncle would drive us around to his favorite beach spots, as I would learn about the amazing way the sea shaped the culture in this place.  I went back after finishing up graduate school in Earth and Planetary Science and writing countless papers using NOAA resources. I went to Woods Hole to see this hub of marine research and the NOAA ships sitting in their docks.  I remember wondering “what do they do when out to sea?”

A couple of weeks after I got my acceptance message and medical clearance, I got a research cruise placement on the Reuben Lasker out of San Diego, California!  With three weeks to prepare, I did everything I could to cover my bases at home, school and prepare for the experience of a lifetime.  I don’t think I have the words right now to express the gratitude I feel toward NOAA to have a program that allows a teacher to embed within their scientific community for a moment to experience what happens on those ships and bring my students behind the scenes of world class science.  I look forward to going to San Diego soon and meeting everyone from NOAA that I have been corresponding with!

 

 

Cathrine Prenot: Lights in the Ocean. Thursday, July 21, 2016

NOAA Teacher at Sea
Cathrine Prenot
Aboard Bell M. Shimada
July 17-July 30, 2016

Mission: 2016 California Current Ecosystem: Investigations of hake survey methods, life history, and associated ecosystem

Geographical area of cruise: Pacific Coast from Newport, OR to Seattle, WA

Date: Thursday, July 21, 2016

Weather Data from the Bridge
Lat: 46º18.8 N
Lon: 124º25.6 W
Speed: 10.4 knots
Wind speed: 12.35 degree/knots
Barometer: 1018.59 mBars
Air Temp: 16.3 degrees Celsius

 

Science and Technology Log

The ship’s engineering staff are really friendly, and they were happy to oblige my questions and take me on a tour of the Engine Rooms. I got to go into the ‘belly of the beast’ on the Oscar Dyson, but on the tour of the Shimada, Sean Baptista, 1st assistant engineer, hooked us up with headsets with radios and microphones. It is super loud below decks, but the microphones made it so that we could ask questions and not just mime out what we were curious about.

I think the job of the engineers is pretty interesting for three main reasons.

On the way to see the bow thruster below decks
On the way to see the bow thruster below decks

One, they get to be all over the ship and see the real behind-the-scenes working of a huge vessel at sea. We went down ladders and hatches, through remotely operated sealed doors, and wound our way through engines and water purifiers and even water treatment (poo) devices. Engineers understand the ship from the bottom up.

One of four Caterpillar diesel engines powering the ship
One of four Caterpillar diesel engines powering the ship

Second, I am sure that when it is your Job it doesn’t seem that glamorous, but an engineer’s work keeps the ship moving. Scientists collect data, the Deck crew fish, the NOAA Corps officers drive the ship, but the engineers make sure we have water to drink, that our ‘business’ is treated and sanitary, that we have power to plug in our computers (the lab I am writing in right now has 6 monitors displaying weather from the bridge, charts, ship trackers, and science data) and science equipment.

I did not touch any buttons. Promise.
I did not touch any buttons. Promise.

Finally, if something breaks on the ship, engineers fix it. Right there, with whatever they have on hand. Before we were able to take the tour, 1st Assistant Engineer Baptista gave us a stern warning to not touch anything—buttons, levers, pipes—anything. There is a kind of resourcefulness to be an engineer on a ship—you have to be able to make do with what you have when you are in the middle of the ocean.

The engineers all came to this position from different pathways—from having a welding background, to being in the navy or army, attending the U.S. Merchant Marine Academy, or even having an art degree.  The biggest challenge is being away from your family for long periods of time, but I can attest that they are a pretty tight group onboard.

 

In terms of the science that I’ve been learning, I’ve had some time to do some research of some of the bycatch organisms from our Hake trawls. “Bycatch” are nontargeted species that are caught in the net.  Our bycatch has been very small—we are mostly getting just hake, but I’ve seen about 30-40 these cute little fish with blue glowing dots all over their sides. Call me crazy, but anything that comes out of the ocean with what look like glowing sparkling sapphires is worthy of a cartoon.

So… …What is small, glows, and comprises about 65% of all deep-sea biomass? Click on the cartoon to read Adventures in a Blue World 3.

Adventures in a Blue World, CNP. Lights in the Ocean
Adventures in a Blue World, CNP. Lights in the Ocean

 

Personal Log

The weather is absolutely beautiful and the seas are calm. We are cruising along at between 10-12 knots along set transects looking for hake, but we haven’t seen—I should say “heard” them in large enough groups or the right age class to sample.  So, in the meanwhile, I’ve taken a tour of the inner workings of the ship from the engineers, made an appointment with the Chief Steward to come in and cook with him for a day, spent some time on the bridge checking out charts and the important and exciting looking equipment, played a few very poor rounds of cornhole, and have been cartooning and reading.

I was out on the back deck having a coffee and an ice cream (I lead a decadent and wild life as a Teacher at Sea) and I noticed that the shoreline looked very familiar. Sure enough—it was Cannon Beach, OR, with Haystack Rock (you’ll remember it from the movie The Goonies)! Some of my family lived there for years; it was fun to see it from ten miles off shore.

Chart showing our current geographic area. Center of coast is Cannon Bean, Oregon.
Chart showing our current geographic area. Center of coast is Cannon Beach, Oregon.
View of Tillamook Head and Cannon Beach. It looked closer in person.
View of Tillamook Head and Cannon Beach. It looked closer in person.

 

Did You Know?

One of the scientists I have been working with knows a lot about fish. He knows every organism that comes off the nets in a trawl down to their Genus species. No wonder he knows all the fish—all of the reference books that I have been using in the wet lab were written by him. Head smack.

Dan Kamikawa, our fish whisperer
One of the books written by Dan Kamikawa, our fish whisperer

 

Resources

My sister (thank you!) does my multi media research for me from shore, as I am not allowed to pig out on bandwidth and watch lots of videos about bioluminescence in the ocean.  This video is pretty wonderful.  Check it out.

If you want to geek out more about Lanternfish, read this from a great site called the Tree of Life web project.

Interested in becoming a Wage Mariner in many different fields–including engineering?  Click here.

Cathrine Prenot: A Fish Tale, Too Big to Fail. July 18, 2016

NOAA Teacher at Sea
Cathrine Prenot
Aboard the Bell M. Shimada
July 17-July 30, 2016

 

Mission: 2016 California Current Ecosystem: Investigations of hake survey methods, life history, and associated ecosystem

Geographical area of cruise: Pacific Coast from Newport, OR to Seattle, WA

Date: July 18, 2016

Weather Data from the Bridge:
Lat: 45º19.7 N
Lon: 124º21.6 W
COG: 11.2
Speed: 17.1 knots
Air Temp: 16.4 degrees Celsius
Barometer (mBars): 1019.54
Relative Humidity: 84%

Science and Technology Log

It is exciting to be out to sea on “Leg 2” of this cruise! The official title of our research is “2016 California Current Ecosystem: Investigations of hake survey methods, life history, and associated ecosystem.” One of the key portions of this leg of the trip is to collect data on whether or not a piece of equipment called the “Marine Mammal Excluder Device” (MMED) makes any difference in the fish lengths or the species we catch. Here is how it works (all images from Evaluation of a marine mammal excluder device (MMED) for a Nordic 264 midwater rope trawl):

The catch swims towards the codend of the net and encounters the MMED
The catch swim towards the codend of the net and encounter the MMED
The catch encounters the grate; some go through the grate while others escape the net through the hatch (shown by the orange buoy).
Some of the catch go through the grate (to the codend) while others escape the net through the hatch (shown by the orange buoy).

Why is this important?  For example, if all of one type of fish in a trawl escape through this MMED, we would be getting a different type of sample than we would if the equipment was off the nets.  Our lead scientist, Dr. Sandy Parker-Stetter explained: “If all the rockfish go out the top escape panel, how will we know they were there?”   To collect data on this, we will be doing a lot of trawls—or fishing, for those non-sea faring folk—some with the MMED and others without it. These will be small catches, we need about 300-400 fish, but enough to be able to make a determination if the equipment effect the data in any way.

We have done a few trawls already, and here are some of the photos from them:

'Young of the Year' Hake
‘Young of the Year’ Hake
Pacific Hake sample
Pacific Hake sample
Wanted: must love fish. And science.
Wanted: must love fish. And science.

All of this reminds me of why we are so concerned with accurately estimating the population of a little fish. To illustrate, let me tell you a story—a story of a fishery thought too big to fail—the Great Banks Atlantic Cod fishery. Why don’t you click on Issue 2 of Adventures in a Blue World: A Fish Tale, Too Big to Fail.

Adventures in a Blue World, CNP. A Fish Tale: Too Big to Fail
Adventures in a Blue World, CNP. A Fish Tale: Too Big to Fail

Cod populations decreased to such a degree (1% of previous numbers), that the Canadian Government issued a moratorium on Cod fishing in 1992.  Our mission—to investigate of hake survey methods, life history, and associated ecosystem—is designed to prevent such a devastating result. We don’t want Hake or other species to go the same route.

Atlantic Cod circa 1920s: from here

Personal Log

We left the left the dock on Sunday at 1145, and made our way under the Newport Bridge and out to sea. It was really wonderful to watch the ship leave the harbor from way up on the Flying Bridge—the top-most deck of the ship. There are four tall chairs (bolted to the deck) at the forward end of the deck, an awning, and someone even rigged a hammock between two iron poles. It is rather festive, although again, there were no drinks with umbrellas being brought to us.

View of Newport, OR from the flying bridge of the Shimada
View of Newport, OR from the flying bridge of the Shimada

I didn’t have any problems with seasickness on my last voyage, but I did take some meds just in case. One of the researchers said that he doesn’t take any meds any more, he just gets sick once or twice and then feels much better. If you are interested, here is a link to my previous cartoon about why we are sea-sick, and how and why ginger actually works just as well as other OTC drugs. All I can say now is that I’m typing this blog in the acoustics lab, and the ship does seem to be moving rather alarmingly from fore to aft–called pitching.  Maybe I should find a nice porthole. In the meanwhile, you can read “Why are we seasick.”

 

Did You Know?

The end of the fishing net is called the codend.  Who knew?  This and many more things can be learned about fishing from reading this handy reference guide.

Elsa Stuber, June 9, 2007

NOAA Teacher at Sea
Elsa Stuber
Onboard NOAA Ship McArthur II
June 4 – 9, 2007

Mission: Collecting Time Series of physical, chemical and biological data to document spatial and temporal pattern in the California Current System
Geographical Area: U.S. West Coast
Date: June 9, 2007

Science and Technology Log 

Up at 06:00 and arrived in San Francisco @ 08:00  Unloaded equipment, mostly by winch onto truck; cleaned quarters and wet and dry labs.

In preparing my report I have included the data from the casts I worked on. As they were a dollar each to reproduce at Kinkos, I decided to only include those four-colored graphs for beam transmission, depth, salinity, and temperature that illustrate different types of locations, near shore or at sea of varying depths. These graphs certainly show the increase in salinity with depth and the falling of temperature with depth.  They show the inverse relationship between the beam transmission and fluorescence. Compare Table 3, Table 6, Table 7, and Table 9 that are from very different depths. There is a lot of information here for my students to analyze.

This has been a stimulating learning experience.  My students like most high school students are not near the ocean, maybe have never been to an ocean.  I think sharing this first hand experience along with the pictures and doing demonstrations of our work and showing the data collected will open a perspective in their minds about the ocean.  They will realize from the chlorophyll analysis and fluorescence the narrow level of the bottom of the food chain. This will bring home the concern for the protection of the health of the biotic life in our oceans.  I intend to do a mock set up of our lab procedures and have them brainstorm how experimental error could be introduced.  This should reinforce the importance of careful procedure in any scientific work.

The scientific staff on this cruise has been exceptional in willing to share their knowledge and, even when we were all tired, to answer my many, many questions about each individuals work in oceanography.  I have found them to be conscientious scientists very interested, stimulated in their work. Some have given me pictures.  Several have done extended work in Antarctica, which was particularly interesting to me. As well, the MBARI staff was very supportive as the other Teacher At Sea and I were learning procedures for our work. It felt good to see how cooperative, flexible they all were with one another no matter how long the days.  I wish we could have been able to go to the MBARI lab this coming week to see how the work continues there.  I intend to go on line and read more about their research and research findings. This will be something to investigate and follow with my students and extending their understanding of the oceans and the oceanographers’ work.

Elsa Stuber, June 8, 2007

NOAA Teacher at Sea
Elsa Stuber
Onboard NOAA Ship McArthur II
June 4 – 9, 2007

Mission: Collecting Time Series of physical, chemical and biological data to document spatial and temporal pattern in the California Current System
Geographical Area: U.S. West Coast
Date: June 8, 2007

Weather from the Bridge 
Visibility: clear
Wind direction 282 NW
Wind speed: 18.9 knots
Sea wave height: 3-5 feet
Sea temperature: 10.5 C
Air temperature: 13.5 C
Sea level pressure: 1013.36
Cloud cover: 100 % status clouds

Science and Technology Log 

Wind woke me up at 06:00, boat rolling.  Early morning 03:00—05:00 winds were 30 knots. Casts 31, 32, and 33 processed by other teams.

Cast 34 @ 09:24 Station H3  Latitude 36.44117 N  Longitude 122.01108 W Cast depth 1000 meters CTD cylinders tripped at 1000, 200, 150, 100, 80, 60, 40, 30, 20, 10, 5, 0 meters Samples processed and stored.  Data for cast is Table 16 at the end of the report.  Worked on chlorophyll analysis with flurometer.

Cast 35 @ 11:47 Station C1  Latitude 36.478487N  Longitude 121.508392 W Cast depth 225 meters CTD cylinders tripped at 225, 200,. 150, 100, 80, 60, 40, 30, 20, 10, 5, 0 meters Samples processed and stored.  Data for cast is Table 17 at the end of the report. I worked on chlorophyll analysis off and on throughout the day.

The HyperPro instrument to measure light up to 40 meters depth in the water has been tested at mid-day each day.  One tube is pointed down and opposite tube is pointed up sensing light levels. A third tube is strapped to the railing registering light levels at all times.  Seechi was used during the daylight hours as well. MBARI staff gave us some Styrofoam cups, two sizes, to decorate as we wanted using different permanent colored markers.  We put all of them in a mesh laundry bag and attached it to a 1000-meter depth cast.  When they came back up they had shrunk to 1/6th of the original size. It demonstrates the amount of air in the Styrofoam, which should be a good illustration for my students.

Wildlife observations: humpback whales, dolphins, sea gulls, cormorants, sooty shearwaters, and albatross. Kathryn said the sooty shearwater cannot take off from the ground very well. This bird will climb up the trunk of a tree a ways and take off from there. They will wear the bark down going up a path on the tree.  She hoped we would see a Yaeger bird, a bird that chases other birds that have been feeding, making them drop their food. That’s how the Yaeger feeds. It is very aggressive she said in pursuing other birds.

Moved to an area in Monterey Bay where whales had been sighted.  Saw five at a distance of half a mile, sometimes a fin, but mostly the whale’s spout from the blowhole.

Packing up equipment so ready to unload early tomorrow in San Francisco.

Each day the plan of the day is posted by the FOO.  I include an example at the end of the report.

We did extra stations as we are ahead of schedule.   Cast 36 @23:58 nutrients only. Final station done by Troy, nutrients only at 03:00 June 9, 2007

Bed at 01:00 June 9th

Elsa Stuber, June 7, 2007

NOAA Teacher at Sea
Elsa Stuber
Onboard NOAA Ship McArthur II
June 4 – 9, 2007

Mission: Collecting Time Series of physical, chemical and biological data to document spatial and temporal pattern in the California Current System
Geographical Area: U.S. West Coast
Date: June 7, 2007

Weather from the Bridge 
Visibility: clear
Wind direction: NW
Sea wave height: 5-8 ft.
Sea temperature: 12.79 C
Air temperature: 14.7 C
Swell wave: 5-8 ft.
Sea Level pressure: 1016.
Cloud cover: partly cloudy

Science and Technology Log 

Up at 06:30. Breakfast and watched with mammal observer on flying bridge.  Saw a few albatross. Very rough water, windy, cold.

Cast 21, 22 and 23 taken by other teams.

Cast 24 @ 08:55 Station 67-75 Latitude  35.5749N Longitude 123.504491 W Cast depth 1000 meters CTD cylinders tripped at 1000, 2000, 150, 100, 80, 60, 40, 30, 20, 10, 5, 0 meters Very windy. Data for cast is Table 12 at the end of the report

Cast 25 @ 11:35 Station NPS 5 Latitude  36.026137 N  Longitude 123.400087 W   Cast depth 1000 meters CTD cylinders tripped at 1000, 900, 800, 700, 600, 500, 400, 300, 200, 100, 50, 0 meters Nutrient samples only taken at this cast.  Data for cast is Table 13 at the end of the report.  Very windy (23 knots)

Spent time again on the flying bridge with mammal observer.  She said on the Beaufort Scale winds above 4 one doesn’t expect to see wildlife out in the ocean. Beaufort scale today is “5”.

Casts 26, 27, and 28 ( wind 26 knots) processed by other teams.

Cast 29 @ 21:27 Station NPS 3 Latitude 36.22583N Longitude 122.57275 W Cast depth 1000 meters CTD cylinders tripped at 1000,900, 800, 700, 600, 500, 400, 300, 200, 100, 50, 0 meters Nutrients samples only collected at this cast. Very windy (wind 22 knots) and water is rough. Data for cast is Table 14 at the end of the report. Worked on chlorophyll analysis.

Took photos of some of the net tow specimen jars to show the extreme of near shore and out at sea differences in material.  Specimens observed today–some shrimp, a few jellyfish, a squid, pteropods, heteropods.  There is not the large amount of krill as observed in the net tow collections closer to shore.

Cast 30 @ 23:37 Station 67-60  Latitude  36.275608 N  Longitude 122.466380 W Cast depth 1000 meters CTD cylinders tripped at 1000, 200, 150, 100, 80, 60, 40, 30, 20, 10, 5, 0 meters Very windy (23 knots) Samples processed and stored Data for cast is Table 15 at the end of the report.

Bed 01:00 June 8th

Elsa Stuber, June 6, 2007

NOAA Teacher at Sea
Elsa Stuber
Onboard NOAA Ship McArthur II
June 4 – 9, 2007

Mission: Collecting Time Series of physical, chemical and biological data to document spatial and temporal pattern in the California Current System
Geographical Area: U.S. West Coast
Date: June 6, 2007

Weather from the Bridge 
Visibility: clear
Wind direction: 291
Wind speed: 16 knots
Sea wave height: 2-3 ft.
Swell wave: 5-7ft.
Sea temperature: 14.671 C
Air temperature: 16.1 C
Sea level pressure: 1021
Cloud cover: 25% scattered cumulus

Science and Technology Log 

Up at 07:00 Discussion continued on how to do deep casts with CTD and avoid kink in wire: lower it slower or put on more weight or etc.  Some staff short on sleep after working with CTD repair last night. I do fine on six hours a night but I feel it when it’s five.  I will try for a nap today.

Cast 13 and 14 were done with other staff and went without problems.  They will try a deep cast again today.

Cast 15 08:00 Station 65-90 Latitude 35.03387N  Longitude -127.45604 W at depth to 1000 m; CTD cylinders tripped at 1000, 200, 150, 100, 80, 60, 40, 30, 20, 10, 5, 0 meters In the wet lab work the funnel for sample #8 was not locked tightly and the apparatus leaked. I put on a new filter and took another seawater sample for #8.  Samples processes and stored. Data for cast is Table 7 at the end of the report.

The two 4′ by 6′ incubators on deck contain the C14 spiked samples placed in a continually flowing seawater bath for twenty-four hours.  Samples are placed in metal tubes with various numbers of holes in the tubes.  The various tubes are designed so that the samples are exposed to 50%, 30%, 15%, 5% and 1%.  One set of samples is not in tubes, but in full sunlight. Then they are evaluated for the rate the phytoplankton incorporate the Carbon 14 as described in Day 3.

Began chlorophyll analysis on the filtered specimens from the range of depths at each station that have been in the freezer more than twenty-four hours.

Marguerite went over the procedure using the flurometer to process the sample. It must be turned on at least one hour before running the tests and the chlorophyll samples #1-12 plus 1 and 5 micron samples must be at room temperature in the dark for at least one hour before beginning. She calibrated the flurometer with acetone.  We rinse the cuvette three times with a couple of milliliters of sample, and then add the remainder to the cuvette.  It will be about 2/3 full or more.  Wipe the cuvette well with a lab wipe to remove any oil on glass from your hand/fingers, place sample gently into flurometer.  The first reading should be taken after it has stabilized, usually 15-20 seconds.  Then two drops of 5% hydrochloric acid are added to degrade the chlorophyll pigment.  A second reading is taken to measure the remaining pigment. These are recorded on a “Bottle Sample Data Sheet”, an example of which is included as Table 8 at the end of the report.  After measurements are recorded, the sample is thrown out in a collection container and the vials disposed of in a waste container.

The cuvette is rinsed three times with acetone and then begin processing the next sample. Again it really helped to have seen this procedure demonstrated on the DVD that was sent to me ahead of the trip.  I was much better prepared.  It was important for the research done as well because if one made a mistake in the sample procedure, there was no sample in reserve to be able to run the test again. I did samples for a couple of hours in the afternoon and a couple more in the evening when I was scheduled for working but waiting for a cast to come up.

Cast 16 and 17 were processed by other team.

Cast 18 @ 15:35 Station 67-90 Latitude 35.4670N  Longitude -124.9409 W Cast depth 4380 went very well. Processed by Erich and Charlotte. Cylinders tripped at 4380 bottom, 4000, 3500, 3000, 2500, 2000, 1500, 1000, 750, 500, 250, 0 meters; Data for cast as Table 9 at the end of the report.

I observed a couple of bongo net tows today. Live net tows are collecting zooplankton and other seawater specimens from the first 200 meters of depth.  The bongo nets have two .8-meter diameter rings with a mesh net and a polycarbonate tube at the end.  The nets were deployed using the ship’s starboard winch equipped with at least 300 meters of wire. The ship maintains a vertical wire angle during the tow of approximately 45 degrees. Kit Clark, the oceanographer in charge of net tows said it was important that the winch be able to maintain a slow, constant retrieval speed.  When nets are retrieved, they are hosed down to wash specimen sticking to the mesh down into the polycarbonate tube. The specimens are transferred to jars and fixed with formalin. There were a lot of krill and one viper eel in the specimens I observed this morning.

Wildlife observer saw three albatross today.  Cast 19 @ 21:14 Station-NPS-8 Latitude 35.325665 N  Longitude 124.438304 W  Cast depth 1000 meters; Cylinders tripped at 1000, 900, 800, 700, 600, 500, 400, 300, 200, 100, 50, 0 meters; Nutrient samples only taken for this cast; Data for cast is Table 10 at the end of the report.

Cast 20 @ 11:29 Station 67-85 Latitude 35.6249 N Longitude -124.5544W  Cast depth 1000 meters; CTD cylinders tripped at 1000, 200, 150, 100, 80, 60, 40, 30, 20, 10, 5, 0 meters; Bottle # 2 leaked, was empty, so no sample collected. Always check that funnels are locked tight before I begin. Samples processed and stored; Data for cast is Table 11 at the end of the report.

Long discussion of the structure and movement of ocean currents.  Dr. Collins is a brilliant scientist, such depth in oceanography.  He uses vocabulary during his explanations that need explanation in themselves. The Great Lakes and fresh water bodies are a lot simpler.

Discussed with Dr. Collins the military value of the studies we are doing.  He said the military does sea floor mapping, looks for mines and things on the sea floor. He explained that there are levels of optimum transmission of sound, channels for submarines.  Determining these best channels relates to the salinity and temperature

Bed @ 01:00 June 7th

Elsa Stuber, June 5, 2007

NOAA Teacher at Sea
Elsa Stuber
Onboard NOAA Ship McArthur II
June 4 – 9, 2007

Mission: Collecting Time Series of physical, chemical and biological data to document spatial and temporal pattern in the California Current System
Geographical Area: U.S. West Coast
Date: June 5, 2007

Weather from the Bridge 
Visibility: Clear
Wind direction 275.64
Wind speed: 13 knots
Air temperature: 16.1 C
Sea wave Height: 1-2 feet
Seawater temperature: 13.98 C
Swell wave: 4-6 feet
Sea level pressure: 1017.4
Cloud cover: 50%, stratus

Science and Technology Log 

Up at 06:00 and went to flying bridge to observe with Kathryn.  Not much wildlife to see other than a few sea gulls. Color of water so blue.  Temperature is cool early in the morning. Breakfast good fruit, lots of starches, sausages.  A time to talk to crewmembers about the different trips of MCARTHUR II from Alaska to Peru.  Jim spoke in detail @ working as a fisherman in Alaska, ice in his moustache, not needing very heavy clothes because you worked so hard you got hot.  He said it was 06:00 until 22:00 in summer time.  He spoke about fishing limit rules, coordinating with Japanese fishing boats, and also how the catch numbers have fallen since ten or fifteen years ago.

Cast 6 and 7 were early in the morning with other cruise staff. All proceeded as expected.

Cast 8 @ 08:18 Station 60-75 Latitude 37.067N Longitude 124.4145 W Cast depth to 1000m; CTD cylinders tripped at 1000, 200, 150, 100, 80, 60, 40, 30, 20, 10, 5, 0 meters Data for cast is Table 5 at end of report. Cast information time is always written in Greenwich time; I subtract seven hours to show our time on ship for the station work.  The Cast information listing for latitude and longitude is close but not exact to Table 1 for the CalCOFI stations. In the 1000 meter depth casts it takes about forty minutes for the CTD to go down to depth and come up again, stopping at the different levels for the specific rosette to open.

I learned more information on the testing of samples from Marguerite Blum, MBARI oceanographer: The nutrient samples contain nitrates and nitrites as well as silicates, phosphates.  The nitrates and nitrites area examined at Moss Landing lab with an auto flow analyzer, which translates sample into voltage and indicates the amount of the nutrient in the sample.

QP (quantitative phytoplankton) will show up to fifteen general types of phytoplankton in a sample.  This is an expensive test to run.  The flow cytometry test divides the sample into four groups: bacteria, prokaryotes, eukarotyes, and zooplankton.  It will determine a general number of how many of each are present in the sample.

The Carbon 14 test shows the amount of carbon uptake by the phytoplankton.  C14 of specimen fluoresces and radioactive emission level counted on a scintillation counter. The chlorophyll analysis of the green chlorophyll is run on the flurometer.  Samples that have been in the freezer 24 hours we will process in the dry lab while on this cruise.  On this cast I also handled the A* filter, the HPLC filter and the POC filter, placing them in their red, blue, and green cryovials respectively, and then put in the liquid nitrogen container. The analysis of HPLC, POC, FCM and N15 samples are not done at Moss Landing but are sent out to other labs for processing.

Cast 9 @ 11:45 Station 60-80 Latitude 36.5677N  Longitude 125.0327 W Cast depth to 1000m; CTD cylinders tripped at 1000, 200, 150, 100, 80, 60, 40, 30, 20, 10, 5, 0 meters; Data for cast is Table 6 at end of report.

There have been bongo net tows at our stations, but often when I am working or sleeping. I have seen some of the specimens caught which are in jars with formalin.  I hope to see a net tow start to finish soon.

I have watched with Kathryn, the Mammal observer, during different periods today and have not seen any wildlife. She saw seven dolphins earlier in the day.  I asked her about the tagging of sea life and she talked about the guidelines. She said the organization had to apply for a permit to the National Marine Fisheries.  This may take up to a year to obtain. A boat doing tagging must display a special flag with a research number on it. The permit will specify the number of “takes” (getting close to or affecting the animal such as a whale or turtle).  She said a lot of information was available on line at TOPP (Tagging of Pacific Pelagics). When it’s on the surface, the signal from the tagged animal will beam up to satellite and transmit its location. How long it will function depends on the battery life, and of course a small animal can only carry a small battery.  The scientist will set the frequency of the beam according to the frequency of the animal at the surface. A sea lion surfaces every fifteen minutes so its battery will last three weeks.  A turtle will surface every second day so its battery will last six months to a year or more. Scientists want to recapture radio equipment so watch closely at the animal’s location.  The equipment will give off a signal for at least a week after it falls off.  Researchers put gummy worms under the suction cups on whales and know it will take about a week for that sugar to be dissolved, and then the apparatus will fall off.  Tic Tacs with suction cups also work.. The equipment is numbered for location and will be returned if found by any ships, any countries at sea. She said a problem that can occur is that is that the sensor on the collar could get algae grown over it so it stays off.

Cast 10 and 11 were with other cruise staff.

Cast 12 was started @ 22:45 and was to be a deep cast, 4500m.  When it reached @1100m transmission of data stopped.  The CTD was brought back to the surface and worked on by staff about three hours. A kink had developed in the wire.  That section was cut out and all connections redone.

Data retrieved gives information for the 1100 m at this location for beam transmission, salinity, temperature, and fluorescence all taken by the computer monitoring system in the dry lab. Bottle samples were not taken.

To bed @ 02:00 June 6th I am greatly stewing about the CTD problems with all it means to the research, to the cruise,  and the expense of it all.

Elsa Stuber, June 4, 2007

NOAA Teacher at Sea
Elsa Stuber
Onboard NOAA Ship McArthur II
June 4 – 9, 2007

Mission: Collecting Time Series of physical, chemical and biological data to document spatial and temporal pattern in the California Current System
Geographical Area: U.S. West Coast
Date: June 4, 2007

Weather DAY 2: San Francisco to sea 
Visibility: Some fog before 12:00, which later cleared
Wind direction: 282.14
Wind Speed: 9 knots
Sea wave height: 1 foot
Seawater temperature: 14.159 C.
Sea level pressure: 1017.15
Air temperature: 14.1 C
Cloud cover: 100% stratus

Science and Technology Log 

Awoke 06:00 and did journal work until 07:15 breakfast.  Studied cruise information.   As suggested by CS Tim, I took a Dramamine II last evening and one this morning.  I don’t want to have seasick problems.  I don’t feel any side effects from the medication.

Safety meeting 09:00 with FOO Middlemiss. It is important to close the heavy doors when going and coming on the ship. We reviewed procedures for Man Overboard, Fire, and Abandon Ship.

Fire: signal = 10-second continuous bringing of the General Alarm bell and a 10-second continuous sounding of the ship’s whistle. Proceed to fantail of ship.

Abandon ship: signal =seven or more short blasts on the ship’s whistle followed by one long blast. Bring survival clothing and PFD to life raft location on the bridge.  We practiced putting on survival clothing:  feet and legs in then hood on your head before putting arms in sleeves and zipping up.  Difficult to do getting arms in by yourself; this is not a quick maneuver.  Mine was the smallest size; feet and arm-hand portion pretty big on me, but I would survive. I brought my mustang survival jacket along on the cruise as well.

Man Overboard: If witnessed throw life ring buoy into the water and call for assistance immediately. After one minute throw a second life ring buoy in the water.  Try to keep visual surveillance of the person in the water. Signal = three short blasts on the ship’s whistle.

For safety drills, dismissal from drill signal = three shorts blasts on the ship’s whistle. Mess hall information, store information, medicine location given.

Ship departed San Francisco approximately 10:15 with very foggy weather, foghorn blowing. It is very loud. If wearing plugs, the hearing of anyone working close to foghorn such as the wildlife observer on the flying bridge would be affected over time.  Special ear protection is needed for persons at that observational post.  Kathryn Whitaker is the wildlife observer on this cruise. She is stationed on the bridge with a lap top computer to record type and quantity of all birds and sea life she observes.  Kathryn is observing from daylight to sundown except going down for meals.  She uses powerful binoculars and camera to photograph whatever she sees.  On some cruises she has two or more staff working with her, one of whom is typing in the computer all that the observers are calling out that they are seeing which is often a great deal if the ship is nearer shore than we will be for most of this cruise.  As we leave SF Bay we see a dead gray whale floating, Kathryn points out the grease trail from the decaying whale blubber floating out on the water. There are cormorants and seagulls in large numbers flying in the area of the ship for the first three and a half hours of our trip. Then we only observe some seagulls.

The overall survey plan is to proceed offshore along CalCOFI (California Cooperative Oceanic Fisheries Investigation) Line 60, occupying stations each 10-20 nMi (nautical miles) to ~175 nMi offshore.  Then proceed to stations each 20nMi northeast to station 67-90 at the offshore terminus of Line 67, and work back into shore along Line 67 with stations 10-20 nMi apart. After the station work is completed, the ship will return to San Francisco and offload gear and personnel.  I will include the CalCOGI station information in Table 1 and Figure 1 of this report.

Operations at the stations are to collect physical, chemical, and biological data by CTD (conductivity, temperature, depth) and its rosette bottles, net tows, and underway surface measurements.  All CTD casts at the stations are to the bottom or 1000 dbars whichever is shallowest. At stations #12 and #16 two deep casts (4500m) are planned conditions and time permitting. Secchi disk cast will be made at daytime stations.  HyperPro optical sensor casts are to be made at midday stations.  Oblique bongo net tows will be to 200m depths.

CalCOFI survey continuous operations while underway will include logging meteorological and sea surface property, a pCO2 measuring system in the wet lab, the incubators for chlorophyll seawater samples on the fantail, and the marine mammal observer.

Cast 1 @ 13:51 Station 60-50, Latitude 37.948N & Longitude -122.888W, Cast depth 40m, Bottom depth 48m, CTD cylinders tripped at 40, 30, 20, 10, 5, 1.5, 0 meters   Data for cast is Table 2 and accompanying data graph including percent beam transmission, depth, temperature, and fluorescence at end of my report. Participants: Tim and Erich from MBARI, USN Charlotte, TAS Elsa  This was good hands on practice for the sampling work.  Charlotte and I received a lot of help, tips for technique.  Tim is very patient with our learning curve.

  1.  We check stopper at bottom of rosette cylinder to determine that it didn’t leak.  Pull out stopper and should only be a couple of milliliters squirting out.  Then open valve at top of rosette to take the sample.
  2.  Open stopper by lining up black circle drawn on stopper with peg on stopper and pull out. Rinse 280ml sample bottle three times with @ 15ml of sea water from rosette and then fill sample bottle to overflowing, close stopper.  Rinse small nutrient sample bottle 3 times and then fill it half to two-thirds full. Tim and Erich were filling other bottles for C14, N15, POC, QP, HPLC, FCM, and A* tests which are described below.
  3.  In wet lab, nutrients numbered sequentially are put in cartons and then promptly put into the freezer.  These will be processed later at the MBARI lab.
  4.  Funnels with filters for the twelve samples were set up prior to reaching the station.  Turn on aspirator pump.  Filter solutions through flasks.  Suction for all samples is improved if you turn off valve on those that have already filtered through.  You can’t get paper filter off the filter piece if suction is still operating.  Be careful at all times to check that sample number matches its numbered filter apparatus, and glass vial the filter is stored in when filtration complete.
  5.  Put particular filter for the fractionated 5 micron and 1 micron filtering.  Sample is labeled “F” collected by MBARI scientist. Pour 100ml of sample into each funnel for these samples.
  6.  Add the 10ml. measured amount of 90% acetone to each glass vial with its filter to “fix” the phytoplankton on the filter.  Place these in the carton in sequential order to be placed in the freezer. These remain there in the dark for at least 24 hours before we can test for chlorophyll levels with the flurometer.
  7. Label samples for casts read for example S307c#2, #5.  Meaning June 3-9 Cruise S307 cast #2 sample #5
  8. Three other filtrations were done which are color labeled: green POC organic carbon, how much carbon is in the water other than the plankton detritus; red A* filter will be evaluated in spectrophotometer to get all wave lengths of life, not just chlorophyll; and blue, HPLC -high performance liquid chromatography which will show 23 pigment types commonly associated with different algae so they may be qualified and quantified for the level the sample was taken.
  9.  The MBARI scientists take the C14 and N15 radioactive samples.
  10.  Set empty bottles in rack and carrying case and put out on back deck to be ready for the next cast. Put new filters in the 12 funnels in the wet lab to be ready for the next cast.

Chief Scientist Tim Pennington sent a DVD with demonstrations on how different sampling and testing of the samples are handled.  It was very helpful to see this walk through ahead, with emphasis on the problems that can arise with the techniques and suggestions on what to do about them.

Cast 2 @ 15:35 Station 60-52.5 , Latitude 37.864N  Longitude -123.065W, Cast depth to 80m, bottom depth 90m; CTD cylinders tripped at 80, 60, 40, 30, 20, 10, 5, 0  meters Data for cast is Table 3 and accompanying data graph at end of report.

CTD goes down and is monitored by observer in dry lab, CTD technician Doug or Dr. Collins. The observer communicates with the bridge and crew to raise the CTD, stop at each specified depth, and to trip open the particular rosette flask at this depth.

I worked on Cast 2 and became a little more efficient.  I’m continuing to try to observe all very carefully so as not to make any mistakes.  Procedures are very precise for accuracy.

Casts 3, 4 were not on my watch.  During that time I went to the flying bridge to do wildlife observation with Kathryn. There were numbers of cormorants and seagulls.  She had seen four dolphins @ half a mile away earlier in the day.

Cast 5 at station 60-57.5 at 21:42 Latitude 36.86N Longitude -123.3612W  Cast depth to 1000m; CTD cylinders tripped at 1000, 200, 150, 100, 80 ,60, 40, 30, 20, 10, 5, 0 meters Data for cast is Table 4 and accompanying graph at end of report. The water from 1000 meters is very cold, 3.843 C compared to 12.144 C at the surface.

The seas are pretty calm so collecting water samples, working with the equipment,  walking around is not a problem.  I have no hint of seasickness so I won’t continue to take Dramamine unless I begin to feel queasy.

Spigot on rosette #12 black circle marker has faded and needs to be remarked.

Go to bed @ 00.30 6/5/07. I’m sharing quarters with three others and my bed is a top bunk. Bunks are not very big, but I’m only 5′ tall so size of bunk is not a problem.  I can just barely sit up though and it is tricky to make it up in the morning.  Plenty of blankets and linens supplied.

 

Elsa Stuber, June 3, 2007

NOAA Teacher at Sea
Elsa Stuber
Onboard NOAA Ship McArthur II
June 4 – 9, 2007

Mission: Collecting Time Series of physical, chemical and biological data to document spatial and temporal pattern in the California Current System
Geographical Area: U.S. West Coast
Date: June 3, 2007

Weather DAY 1: San Francisco, Pier 30/32 
Visibility: 10 nautical miles
Wind direction: 270 NW
Wind Speed: 8 knots
Sea wave height in harbor: 1′
Seawater temperature: 15.129 C.
Sea level pressure: 1016.4
Air temperature: 15.2
Cloud cover: 1/4 cumulus

Science and Technology Log 

The day began @ 07:30 picking up equipment at Moss Landing and riding up to San Francisco in van with other MCARTHUR II cruise members: Chief Scientist Tim Pennington, Biological Oceanographers-Marguerite Blum, Kit Clark, Erich Rienecker, Troy Benbow, Charlotte Hill; Physical Oceanographer, Dr. Curt Collins; CTD technician, Doug Conlin. At Pier 30/32, Marine Mammal Biologist, Katherine Whitaker, joined us and the other Teacher at Sea participant, Turtle Haste.

Tim Pennington coordinated the staging operation with the (FOO) Field Operation Officer Lt. Amanda Middlemiss.  The large equipment for the cruise was at the pier on a flat bed truck and was loaded by crane on the ship’s deck with the assistance of the ship’s crew. All scientists were involved in unpacking the gear and setting up the wet lab and dry lab for the Time Series study work.  As these labs have been physically updated since the last MBARI cruise on MCARTHUR II, set up in these labs required some modifications. All staff commented on the benefits and advantages of the lab improvements.

I reviewed material I researched on line prior to cruise about the Monterey Bay Aquarium Research Institute (MBARI) Time Series program.  The focus is on the relations between oceanic carbon and nitrogen cycles and climate variability with emphasis on measuring the primary phytoplankton production.  The research involves both observational and experimental studies with shipboard measurements of physical, chemical and biological parameters during cruises in Monterey Bay (since 1989) and offshore into the California Current (since 1997) at different seasons of the year.  The data collected over this time span is being used to construct synthetic views of the oceanographic system dynamics of the California Current. The work has documented seasonal cycles, El Ninos and La Ninas and longer decade-scale cycles (e.g., Pacific Decadal Oscillation).  The overall goal is to learn as much as possible about the earth’s climate and ocean systems, and therefore it is important to understand these cycles. Beyond construction of views of the California Current cycles and understanding the causation of them, will scientists determine that the directions show potential effects of global warming?

As stated in the summary of the MBARI Time Series Program report 2007: “Is this a local-or remotely-driven effect?  We are uncertain. Is it important? You bet.  Why? Because we area certain that (1) conclusions about global climate change begin with local observations, and (2) unusual conditions are often highly informative.”

Chief Scientist (CS) Tim Pennington went over the wet lab organization with the three of us new to working there, defining the different sample bottles and chemicals used in collecting and processing the sea water samples.  He showed us which type of samples were stored in the freezer or in the liquid nitrogen, and which were placed in the seawater bath on the back deck. We signed up for our individual research tasks, my assignment is seawater sample collection from the rosette bottles of the CTD and processing in the wet lab. When filtered samples are ready, to process with the flurometer for chlorophyll level. My shift is 08:00 – 12:00 and 20:00-24:00.  I work with CS Tim. Then we are free to study/work in other areas as you would like or as you are needed.  We put duct tape ridge along front edge of wet lab tables to help stop materials from sliding off counter if ship is rolling.

At 16:00 we moved our personal belongings to our assigned quarters and then were free to explore the set-up of the MCARTHUR II. Important to note were the areas where one must wear a hard hat and a PFD. No open toed footwear outside your quarters. Pay attention to stay far away from winches when they are being used.

FOO Lt. Middlemiss requested that we review the safety instructions packet found in our quarters and that we should be ready for the safety drill to take place the next day.

Bed at 00:30 June 4th.