Richard Chewning, June 6-7, 2010

NOAA Teacher at Sea
Richard Chewning
Onboard NOAA Ship Oscar Dyson
June 4 – 24, 2010

NOAA Ship Oscar Dyson
Mission: Pollock Survey Geographical area of cruise: Gulf of Alaska (Kodiak) to eastern Bering Sea (Dutch Harbor)
Dates: June 6-7, 2010

Weather Data from the Bridge

Position: Snakehead Bank, Gulf of Alaska
Time: 1700 hrs
Latitude: N 56 00.390
Longitude: W 153 46.380
Cloud Cover: Overcast
Wind: 12 knots from the SE
Temperature: 7.1C
Barometric Pressure: 1016.9 mbar

Science and Technology Log

I have been impressed by the wide array of oceanographic research the Oscar Dyson is able to conduct. A few examples include biological studies of organisms ranging from microscopic plankton to massive marine mammals, collecting a variety of weather data, describing both physical and chemical characteristics of seawater (such as temperature, salinity, chlorophyll, and dissolved oxygen), conducting acoustic surveys of marine life and the sea floor, and much more.

Three Saints Bay nautical chart

One of the Dyson’s ‘bread and butter’ surveys is our survey studying the distribution, biomass, and biological composition (male/female ratios and age) of walleye pollock in the Bering Sea. Walleye pollock is a very important fishery for Alaska. You have almost certainly been a part of this fishery as most fish sandwiches in fast food restaurants and fish sticks in the frozen food section of your local grocery store are Alaskan-caught pollock.

One of the Oscar Dyson’s many tools for this research is her impressive array of acoustic sensors located on the ship’s hull and centerboard. The centerboard is an extension of the hull that can be raised and lowered in the water in order to position most of the Dyson’s sensitive acoustic sensors below the bubbles often found near the water’s surface. These air bubbles interfere with sound traveling through the water and degrade the quality of the data being collected. The Dyson has six downward looking centerboard-mounted transducers, each transmitting a different frequency. Why so many frequencies? Since different types of marine organisms interact with sound waves differently producing varying acoustic signatures, the Dyson must be equipped with a variety of sensors to best characterize the variety of marine life encountered during a survey.

For example, lower frequencies are better suited for fish such as pollock and the higher frequencies are better suited for smaller organisms such as plankton. Think of transducers as a downward shining flashlight illuminating the depths of the ocean with sound rather than light.

The Dyson also has other acoustic sensors such as the ME-70 multibeam echosounder that has the unique ability to look over a much wider angle through the water. Acoustic research works on the same echo location principle that bats and marine mammals employ to find food and navigate. By sending out sound waves and measuring the time the sound takes to travel back after encountering an object, one can learn a great deal about that object’s properties such as distance, size, and movement.

Before traveling to the Bering Sea to start our pollock survey, the Dyson’s scientists must take great care to ensure that their echo-sounding equipment is calibrated correctly. Calibrating the transducers is similar in concept to tuning a piano string or zeroing a sight on a rifle. To this end, the Dyson anchored in Three Saints Bay, a sheltered bay protected from the wind, waves, and currents of the open ocean, at least theoretically. While a troublesome storm passed almost directly overhead, scientists from the Midwater Assessment and Conservation Engineering (MACE) Program (part of the Alaska Fisheries Science Center (AFSC) located in Seattle, WA), the US Fish and Wildlife Service (FWS located in Anchorage, AK), and the Pacific Institute of Fisheries and Oceanography (located in Vladivostok, Russia) worked diligently to fine tune their acoustic sensors.

Copper sphere used to calibrate the acoustic sensors
Bill and Patrick positioning spheres under the Dyson

Paul Walline, Patrick Ressler, Darin Jones, Bill Floering, and Mikhail ‘Misha’ Stepanenko worked day and night calibrating their equipment using metal spheres positioned directly under the ship.

Spheres of different sizes and materials with known acoustic signatures (such as tungsten carbide and copper) are used to calibrate the transducers.

The crew of the Dyson works around the clock as ship time is precious. The scientists work 12 hour shifts, either from 4am to 4pm (the shift to which I am assigned) or from 4pm to 4am. The acoustics lab where the data is collected and analyzed is affectionately called ‘The Cave’ as there are no portholes (windows) to tell the time of day outside.

The acoustic lab, a.k.a. “the cave”

Personal Log

I wasn’t sure when the Dyson arrived at Three Saints Bay as I had retreated to my stateroom early in the evening of the 4th as I was feeling the effects of the rolling seas. I am being berthed with the ship’s 2nd Cook, Floyd Pounds, who is also from Georgia but now calls the Dyson home.
Floyd works with the Chief Steward, Rick Hargis, who has been with NOAA for 20 years and is originally from Washington State. So far the meals have been very filling and satisfying (there is even an ice cream bar!).

My stateroom is located on the crew deck, one level below the main deck near the bow (the pointy end of the ship) on the starboard side (the right side when facing the bow). Utilizing every nook and cranny and with no wasted space, my berth is quite cozy and is surprisingly comfortable. Fortunately with the help of some seasickness medication, I soon found my sea legs and awoke feeling refreshed and hungry (always a good sign!). Seasickness comes from conflicting messages received from the inner ear and the eyes by the brain (the inner ear feels the motion of the boat rolling and pitching in the water but the eyes report a stable environment confusing the brain).

Snug as a bud in a rug
Richard, ready for a swim

A person soon observes that safety is paramount onboard the Dyson as with any NOAA vessel. For example, within 24 hours of leaving Kodiak, the entire crew conducted fire and abandon ship drills. These drills are conducted once a week and are essential for maintaining readiness in the event of an emergency. During the abandon ship drill, I was able to practice donning my survival suit just like our visiting Coast Guard kids did in Kodiak! Although the suit is designed to be quite snug to keep cold water out and to keep the body warm, I was thankful I didn’t have to put the suit to the test by going over the side. To my surprise, Chief Marine Engineer Jerome ‘Jerry’ Sheehan and ENS Russell Pate did just that, going for a dip in the frigid 7.3 degrees Celcius or ~45 degrees Fahrenheit waters! Jerry and Russell used dry suits to scuba dive under the Dyson to check the hull, the prop, and the transducers for anything out of place such as barnacles on the transducers or tangled fishing gear. The only discovery was of a piece of bull kelp snagged on one of the blades of the prop which may explain a noise that was heard on the hydrophones (microphones located under the Dyson’s hull) during our departure from Kodiak.

CO Hoshlyk overseeing recovery divers Jerry Sheehan and ENS Russell Pate

After completing our calibrations and safety operations, the Dyson sailed for a site called Snakehead Bank located 60 nautical miles southeast of Kodiak. The name comes from the bathometric profile of the seafloor of this area which resembles the head of a snake. We soon began conducting camera operations for ground-truthing sea floor composition that I will discuss in my next log!

Remnants of Nunamiut, earliest Russian settlement 1792 in three saints bay, Kodiak
Departing Three Saints Bay

 

Where did the NOAA ship Oscar Dyson’s name originate?

 

The Oscar Dyson is named for an Alaskan fisherman who was very influential in fisheries development and management in Alaska. From his days as a commercial fisherman, Oscar Dyson was a pioneer and advocate for Alaska fisherman and was very influential in the growth of this important industry. Alaska’s commercial fishing industry spans the state and includes salmon, herring, pollock, various shellfish, and various ground fish like halibut. While traveling through the Ted Stevens International Airport in Anchorage, I learned that Alaska is a land defined by water with more than three million lakes and more coastline than the rest of the United Sates combined! Alaska is also the only state in the US to have coastlines with three different oceans/seas: the Pacific Ocean, the Arctic Ocean, and the Bering Sea.

Karen Matsumoto, April 25, 2010

NOAA Teacher at Sea: Karen Matsumoto
Onboard NOAA Ship Oscar Elton Sette
April 19 – May 4, 2010

NOAA Ship: Oscar Elton Sette
Mission: Transit/Acoustic Cetacean Survey
Geographical Area: North Pacific Ocean; transit from Guam to Oahu, Hawaii, including Wake Is.
Date: Friday, April 25, 2010

Science and Technology Log

The Oscar Elton Sette is making its way to Wake Island, and we hope to be there by tonight. One of the research operations is to recover a HARP (High-frequency Acoustic Recording Package) that is in place on Wake Island and replace it with a new HARP unit.

This morning, I was on “CTD duty” at 4:30 a.m. A CTD (conductivity-temperature-depth) station is deployed prior to the start of the visual survey effort, right at sunrise. The CTD data is collected using the ship’s SeaBird CTD shown below. The CTD is deployed to a depth of 1000 meters (depending on depth where we are) with a descent rate of about 30 meters per minute for the first 100 meters of the cast, then at 60 meters per minute after that. It takes three people, plus a winch driver to deploy the CTD, as well as the expert operation from the bridge to keep the ship steady and in one place during the entire operation!

Checking the CTD unit prior to launch.
Launching the CTD unit.
Background on CTDs

The CTD is a device that can reach 1,000 meters or more in depth, taking up to five water samples at different depths, and making other measurements on a continuous basis during its descent and ascent. Temperature and pressure are measured directly. Salinity is measured indirectly by measuring the conductivity of water to electricity.

Chlorophyll, a green photosynthetic pigment, is measured indirectly by a fluorometer that emits purple light and measures fluorescence in response to that light. These measurements are made continuously, providing a profile of temperature, salinity, and chlorophyll as a function of depth. The CTD unit is torpedo-shaped and is part of a larger metal water sampling array known as a rosette. Multiple water sampling bottles are often attached to the rosette to collect water at different depths. Information is sent back to the ship along a wire while the instrument is lowered to the depth specified by the scientist and then brought back to the surface.

Monitoring the CTD in the ship’s E-lab.
Data gathered from the CTD during its descent.

By analyzing information about the water’s physical parameters, scientists can make inferences about the occurrence of certain biological processes, such as the growth of algae. Knowledge like this can, in turn, lead scientists to a better understanding of such factors as species distribution and abundance in particular areas of the ocean.

I am continuing my acoustic work with the sonobuoys. Today I heard a Minke whale BOING! Below is what a Minke whale boing looks like on the computer. It sounds very much like someone blowing a low tonal whistle or a cell phone vibrating on the desk!

 

To hear an Atlantic minke whale call (which is different from those found here in the North Pacific, but really cool!) go to this website:

http://www.pmel.noaa.gov/vents/acoustics/whales/sounds/sounds_atlminke.html

Personal Log

I am making so many great friends among the Sette crew and the science team! I am getting spoiled from all the fantastic meals put together by Randy our cook, and no one ever wants to miss a meal! Our wonderful Doc Tran makes incredible Vietnamese dishes and delicious desserts. Today we had cream puffs for dinnertime dessert! Who would have ever guessed!

Marie Hill, our Chief Scientist and fearless leader was awarded the prestigious NOAA Team Member Award! We surprised her with balloons and decorations in her cabin, and Doc Tran and Lisa made a yummy cake in celebration! Congratulations Marie!!!

Marie Hill, Chief Scientist finding her cabin wildly decorated to congratulate her on her award.

We had a visitor today on the flying bridge-an exhausted juvenile red-footed booby! He sat on the mast, finding a place to rest in the middle of the ocean! It felt great to feel the warm wind hit my face and watch the sapphire blue water crash against the bow of the ship! What a great feeling!

Juvenile red-footed booby on the bridge
Deep blue Pacific ocean water!

Question of the Day: How can you figure out how much food to bring on a 2-week cruise? How do you keep the food fresh? What do you do with leftovers?

This is the situation that the Chief steward has to deal with on every cruise! How would you figure this out? Can you do the math?

New Term/Phrase/Word of the Day: Beaufort Sea State is an empirical measure for describing wind speed based mainly on observed sea conditions. It is also called the Beaufort Wind Force Scale. We stop conducting our visual observations when wind/sea conditions reach Beaufort 7, as wind and sea conditions are too rough to accurately make observations (and its windy out there!).

Something to Think About:

This part of the North Pacific is often described as an ocean desert. We have not seen any whales, and have had only a couple sightings of dolphins since we left Guam. We have also seen migrating sea birds, but not in huge numbers. What do you think may account for the lack of sea life in this expanse of tropical waters?

Animals Seen Today:

  • Sooty tern
  • Red-footed booby (juvenile)

Did you know?

That the team of whale visual observers never discuss the numbers of animals they see among themselves. Some people consistently count high, others count low, others are spot on! By not discussing how many animals they observed, they don’t influence each others’ observations. Back at the lab, researchers compare each observer’s counts from their written observations, and can tell which observers tend to under or overestimate numbers of animals they see. They can then make adjustments to total numbers based on everyone’s observations! This is similar to calibrating thermometers or other scientific equipment!

Today’s sunset from the Sette.

Karen Matsumoto, April 19, 2010

NOAA Teacher at Sea: Karen Matsumoto
Onboard NOAA Ship Oscar Elton Sette
April 19 – May 4, 2010

NOAA Ship: Oscar Elton Sette
Mission: Transit/Acoustic Cetacean Survey
Geographical Area: North Pacific Ocean; transit from Guam to Oahu, Hawaii, including Wake Is.
Date: Friday, April 16, 2010

Science and Technology Log

The research mission for this cruise is to follow a transit from Guam to O‘ahu, Hawai‘i via Wake Island, and conduct an acoustic (hearing) and visual (seeing) survey of cetaceans (whales and dolphins) along the way. A transit is similar to a transect line you use to monitor our beaches in our nearshore studies! This transit study will be conducted from April 19 to May 4, 2010. This project represents important and groundbreaking research for whale biologists, since very little is known about the distribution and vocal behavior (the sounds made by whales) of baleen whales in this part of the Pacific.

Our research mission has several objectives:

  • Collect data on the presence of whales/dolphins and their abundance (how many)
  • Collect tissue samples from whales/dolphins for genetic studies
  • Collect photo identification on any whales/dolphins observed
  • Collect acoustic (sound) data on whales/dolphins to help in species identification and understanding their vocalizations
  • Collect acoustic data on fisheries to understand the distribution of prey species along the transit line
  • Recover and install underwater acoustic monitoring equipment, called a HARP (High-frequency Acoustic Recording Package), near Wake Island that will remain there for a year.

The research team consists of 12 scientists who are trained in visual observations of cetaceans and acoustic monitoring. I am part of the research team, and will fill in for staff conducting the visual observations and routinely conduct the acoustic monitoring.

The visual observation team consists of eight biologists rotating between four stations: Two “big eye” (25 x 150) binocular stations, one on the port (left) side and one on the starboard (right) side; one station forward observing with the naked eye and 7X binoculars; and one station rear-facing looking behind the ship with naked eye and 7X binoculars. Scientists work on 2-hour shifts and rotate among the scientists.

Visual observation station on flying bridge.
Research team member Adam on a “Big Eye”.

The acoustic team monitors whale vocalizations using two different methods. One method uses a hydrophone array towed behind the ship 24 hours a day (mostly to monitor toothed cetaceans, including dolphins). This hydrophone array is similar to the ones installed at Seattle Aquarium, Neah Bay, and other locations to monitor orcas and other whales in Washington State.

The other acoustic monitoring method uses Navy surplus sonobuoys (which were originally developed to detect submarines) that are launched three times a day at 0900, 1300, and 1700. The sonobuoys have a wide range in frequency response. They are able to pick up sounds between 5 Hz (cycles per second) and 20,000 Hz. Although humans have a hearing range of about 20 Hz to 20 kHz (20,000 Hz), our hearing is most sensitive between the frequencies of 1 kHz (1000 Hz) and 10 kHz (10,000 Hz). So, we can hear some of the clicks, whistles, and ‘boings’ of some dolphins and whales (‘boings’ are made by minke whales), but we have to “visually hear” others that are too low for humans to hear. The vocalizations of some baleen whales are not audible to the human ear, but are detected by the sonobuoy and are visible on the computer with the use of special software. We visually monitor from a range of 10 Hz to 240 Hz, to detect the presence of baleen whales, while listening for higher frequency vocalizations. Signals picked up from the sonobuoys are transmitted to a radio receiver on the ship. All data, including measurements of a vocalization frequency range and duration are recorded on a computer program and also logged in a hand-written journal and rerecorded on an Excel spreadsheet. All data collected will be carefully analyzed in a lab at a later date.

So far on the research cruise, there has been very little cetacean activity observed by visual observers or the scientists conducting acoustic monitoring. These waters have not been widely surveyed for cetaceans, so any data will add to the collective knowledge base of this area. As a scientist, it is important to remember that “the absence of data is data” in understanding the presence/absence and abundance of cetacean species in these deep, low productivity ocean waters.

Personal Log

The Oscar Elton Sette received its sailing orders to leave at 1500 on Monday, April 19, 2010. The generator part we were waiting on finally arrived (by way of Japan!) and we set sail promptly at sailing time. I am finally getting used to using the 24-hour clock!

Sailing orders.
Leaving the dock at Guam.
Sette’s colors flying!

We left Guam with fairly calm seas, but the winds picked up and we were soon rockin’ and rollin’! We had our “Welcome Aboard” meeting, where we learned about ship protocols and safety, as well as getting to know some of the ship’s crew. Of course, a large part of sailing preparation is the “safety drill” and I had my first “close encounter” with a survival suit! The Safety officer, Mike promptly provided me with a survival suit that actually fits much better…the first one could have accommodated two of me!

Karen in survival suit made for 2 Karens.
…and out of the survival suit! Whew!

I was ill prepared for what was to come. With high seas, and no “sea legs” I was struck by seasickness, which sent me right to my bunk to sleep—in fact that was about all I could do! We are fortunate to have a wonderful Doc on board, who provided me with the right meds and advice to be able to recover and feel human again! The greatest comfort I’ve gotten in a long time was to know that “the survival rate for seasickness is 100%!”

Doc Tran who took care of all of the seasick scientists!
My bunk, where I spent most of two days recuperating!

New Term/Phrase/Word of the Day: sonobuoy

Question of the Day: Did you know that sonobuoys were first developed by the U.S. Navy, made to be dropped from aircraft, and designed to locate submarines during WWII?

Something to Think About:

Whales migrate to tropical waters to give birth in winter and spring, and travel to colder, food rich waters for feeding during the summer.

Animals Seen Today:

• Spotted dolphin (Stenella attenuata)

Did you know?

…that scientists take tissue biopsy samples from cetaceans by using a crossbow to shoot a special dart with a metal tip that penetrates the skin and blubber then pops out. The dart has a float and string attached to one end so that it can be retrieved easily with the tissue sample (about the size of a pencil eraser) still inside the tip. Whale research scientists have to be good archers! Don’t worry, the animals rarely notice when they are darted!

Jennifer Fry, July 26, 2009

NOAA Teacher at Sea
Jennifer Fry
Onboard NOAA Ship Miller Freeman (tracker)
July 14 – 29, 2009 

Mission: 2009 United States/Canada Pacific Hake Acoustic Survey
Geographical area of cruise: North Pacific Ocean from Monterey, CA to British Columbia, CA.
Date: July 26, 2009

Weather Data from the Bridge 
Wind speed: 10 knots
Wind direction: 100° [from the east]
Visibility: fog
Temperature: 13.5°C (dry bulb); 13.5°C (wet bulb)
Sea water temperature: 10°C
Wave height: 1ft.
Swell direction: 315° Swell height:  6 ft.

Here I am checking HAB samples.
Here I am checking HAB samples.

Science and Technology Log 

We conducted a number of HAB, Harmful Algal Bloom sample tests. The Harmful Algal Bloom test takes samples at predetermined location in our study area. The water is filtered to identify the presence of toxic plants (algae) and animals (zooplankton). The plankton enter the food chain specifically through clams and mussels and can be a possible threat to human health.

We also conducted XBTs, Expendable Bathythermograph; and one  fishing trawl net. The trawling was successful, catching hake, squid, and Myctophids.  Fishery scientist, Melanie Johnson collected specific data on the myctophids’ swim bladder.  The swimbladder helps fish regulate buoyancy.  It acts like a balloon that inflates and deflates depending on the depth of the fish. Sharks on the other hand have no swim bladder. They need to swim to maintain their level in the water. Marine mammals such as dolphins and whales have lungs instead of a swimbladder.  Most of the sonar signal from the fish comes from their swimbladder.  The study of the swimbladder’s size helps scientists determine how deep the fish are when using the sonar signals and how strong their sonar signal is likely to be.

Commander Mike Hopkins, LTjg Oliver Brown, and crewmember John Adams conduct a marine mammal watch on the bridge before a fishing trawl.
Commander Mike Hopkins, LTjg Oliver Brown, and crewmember John Adams conduct a marine mammal watch on the bridge before a fishing trawl.

The scientists tried to conduct a “swim through” camera tow, but each time it was aborted due to marine mammals in the area of the net. During the “Marine Mammal Watch” held prior to the net going in the water, we spotted humpback whales. They were observed breeching, spouting, and fluking. The humpback then came within 30 feet of the Miller Freeman and swam around as if investigating the ship.

Animals Seen Today 
Fish and animals trawled: Hake, Squid (Cephalopod), and Myctophids.
Marine Mammals: Humpback whale.
Birds: Albatross, Fulmar, and Shearwater.