Valerie Bogan: June 17, 2012

NOAA Teacher at Sea
Valerie Bogan
Aboard NOAA ship Oregon II
June 7 – 20, 2012

Mission: Southeast Fisheries Science Center Summer Groundfish (SEAMAP) Survey
Geographical area of cruise: Gulf of Mexico
Date
: Sunday June 17, 2012

Weather Data from the bridge:
Sea temperature 28 degrees celsius, Air temperature 26.4 degrees celsius, calm seas.

Science and Technology Log

The last piece of equipment I’m going to discuss is the trawl net.  This is a very large net which is towed along the bottom for thirty minutes collecting all of the fish and invertebrates in its path.  At the end of the time allotment a crane is used to pull the net off of the bottom and ropes are pulled to bring it on deck.  The bottom of the bag is tied very tightly to keep it from coming open during the run and also to keep the dolphins from pulling it open so they can steal the catch.  I have often seen dolphins swimming alongside the ship. I always thought it was just because they were friendly, but I learned today that it is because they want to get our fish.  Once the bag is on deck the bottom is untied and the creatures are released into baskets so the total weight of the catch can be measured.  Once the catch has been weighed it is taken into the wet lab and sorted by species.  Each species is then weighed and measured so the health of the population can be determined.

Inputting trawl data
The catch from the trawl must be processed and the data inputed into the computer.

Alonzo Hamilton is the watch leader for my shift and has been a NOAA employee for the last thirty years.  He studied science in college and currently holds an Associate arts in science degree, a bachelor of science degree in biology, and a master of science degree in biology.  His role at NOAA is chief scientist for the deep water survey and chemical hygiene officer for the Pascagoula lab.  He enjoys his job but sees places for improvement.  For example he wishes that NOAA would implement a whole ecosystem management plan instead of the current plan of managing one species at a time. The part of his job he enjoys the most is when he talks to a group of people about his work and witnesses the light of understanding pass across their faces.  He finds that so rewarding because his real joy comes from sharing his knowledge with other people and leading them to a love of the natural world.  When asked what his advice for a middle school student would be he replied, “Figure out what you love to do and find a way to get paid for it.  You don’t have to make a lot of money to be successful, just pick something you love and make enough so you can support yourself.”

Alonzo Hamilton
Alonzo verifying the trawl data.

I recently spent some time talking to LT Sarah Harris about her position in the NOAA Corps.  This part of NOAA is responsible for supplying each ship with a bridge crew whose officers are charged with protecting the ship and all crew members.  Lt. Harris graduated with a Bachelor of Science degree in Marine Science and after a couple of years looking for the right position she decided to look into joining the NOAA Corps.  Luckily for her, one of their requirements is that applicants have to have a college degree in science or engineering, so with her marine science degree she was set.  She was accepted to the program and set off for the three-month officer training course which is held at the United States Merchant Marine Academy (USMMA) in Kings Point, New York.  During the training the recruits learn maritime and nautical skills, shipboard operations and management, small boat handling, marine navigation, ship handling, seamanship and related subjects.  Toward the end of training each student is given a list of possible placements and allowed to choose their top three assignments.  The NOAA officials then look through the choices and assign each student based on need and student choice.  Sarah was really lucky because she received her first choice which was a ship that sailed out of Hawaii.  In the NOAA Corps your sea assignment lasts between two and two and a half years.  After that first assignment you are given a land assignment which lasts for three years.  During land assignments you are expected to help with administrative duties and training.  After the land assignment you are given another sea assignment and the cycle continues.

Lt. Sarah Harris
LT Sarah Harris, the operations officer of the Oregon II.

Personal Log

Today is Father’s Day so I would like to take a moment to wish my dad a happy Father’s Day.  While it is necessary for these scientific cruises to take the scientists and crew out to sea for weeks on end it is difficult for them to be away from the people they love.   So if you are at home and your dad is nearby let him know how much he means to you.

Me with a crab from the trawl net
Here I am holding a large crab we got from the trawl net.

Lesley Urasky: Setting Sail from St. Croix, June 16, 2012

NOAA Teacher at Sea
Lesley Urasky
Aboard the NOAA Ship Pisces
June 16 – June 29, 2012

 

Mission:  Caribbean Reef Fish Survey
Geographical area of cruise: St. Croix, U.S. Virgin Islands
Date: Saturday, June 16, 2012

Location:
Latitude: 17.6395
Longitude: -64.8277

Weather Data from the Bridge:
Air Temperature: 29°C (84°F)
Wind Speed: 15.76 knots (18.1 mph)
Relative Humidity: 79%
Barometric Pressure: 1,012.7 mb
Surface Water Temperature: 29°C (84°F)

Personal Log

My trip to meet the Pisces and become a Teacher at Sea was a two-day process.  I traveled from my home in Sinclair, Wyoming to Denver, Colorado to catch the first of three flights.  The first flight was from Denver to Dallas/Ft. Worth International Airport; after a two-hour layover, I then flew to Miami.  Originally, I was to travel the entire way in one day.  However, I didn’t want to arrive in St. Croix at 10:00 p.m. and have to make my way to the pier, pass through security, board the ship, find my stateroom, and hopefully meet some of the crew and scientists late at night.  Instead, I spent the night in Miami and flew to St. Croix the next morning.

Trip to St. Croix from Sinclair, Wyoming
Google Earth view of my trip to St. Croix.

Once I landed at the Frederiksted Airport on St. Croix, I took a taxi to the cruise ship pier.  The taxi driver was very concerned about taking me there, because no cruise ships were docked; he was doubtful that any ship was there.  After convincing him that a NOAA ship was indeed docked, he moved aside the sugar cane in the back, loaded my bags, and took me to the pier.  Breaking my trip into two pieces turned out to be the best plan because once I got to the security gate, there was no approved members list at security and they wouldn’t accept my travel document.  They called the ship and the Commanding Officer (CO) came down the pier to meet me at the gate and escort me to the ship.  After a quick tour of the ship, I took some time to settle into the stateroom I’m sharing with the Operations Officer, Kelly Shill.  The rest of the afternoon was spent exploring Frederiksted.

The Pisces viewed from Frederiksted, St. Croix

On Friday, June 15th, I went to Christiansted with some of the ship’s crew members.  Kelly Schill, Operations Officer; Chris Zacharias, Junior Engineer; Peter Langlois, 3rd Mate; and I went shopping for souvenirs, had lunch, and fed the resident school of tarpon outside of Fort Christian Brew Pub.  Later that evening, we went to a beachside restaurant and watched a performance by some modern dance fire dancers.

Hungry tarpon waiting for tidbits.
Modern fire dancers
Fire dancers

Today we left port and embarked on the third Leg of the Caribbean Reef Fish Survey.  The first leg was when the Pisces traveled from Pascagoula, Mississippi to San Juan, Puerto Rico; here the ship picked up the scientific crew.  The second leg was from San Juan, Puerto Rico to St. Croix; during this time period, they collected data about the ocean and the fish along the reef system.  I joined the scientists and crew of the Pisces at Frederiksted, St. Croix in the U.S. Virgin Islands.  The Pisces was in port at St. Croix for three days for personnel change, resupply of the galley, and to give the crew a rest. During this leg, we will be traveling back to San Juan, Puerto Rico taking samples around St. Croix and St Thomas islands.  In addition to the reef fish survey, the Pisces will be deploying the base (anchor and chain) for another buoy to collect oceanographic data 3 nautical miles (nm) south of Saba, which is located between St. Croix and St. Thomas.  The University of Virgin Islands is working in conjunction with NOAA to accomplish this goal.  Once back in San Juan, the scientists will leave the ship, returning home with the data.  On the fourth leg, the Pisces will return to Mayport, Florida, retrieving a buoy that is adrift along the way.  Commander Fischel is kindly allowing me to remain aboard during the cruise back to port!

Science and Technology Log

Here is a quick overview of all equipment the survey will use to collect data. There is an array of four video cameras that is baited with frozen squid.  The array is lowered over the side of the ship at each sampling site, and allowed to rest on the bottom for 40 minutes.  The cameras cannot be deployed during the night because there are no lights on the array. Therefore, viewing is dependent upon the availability of sunlight penetrating the water column.  Because of the need for natural light, the cameras are only used during daylight hours; the array cannot be deployed earlier than one hour after sunrise and must be retrieved from the bottom of the continental shelf or shelf edge one hour before sunset.

After the camera array is deployed, a cluster of instruments called a CTD is lowered to collect data on the ocean environment.  CTD is an acronym for Conductivity, Temperature, and Depth. Conductivity is used to determine the salinity (the amount of salts dissolved in the water).  Water conducts electricity (this is why you shouldn’t use electrical appliances while in or around water, and why the lifeguard tells you to get out of the pool during a thunderstorm).  As the salinity increases, conductivity increases.  Temperature is a very straight forward measurement.  I’m sure you’ve measured the temperature of several different things ranging from air temperature (to see how hot it is outside) to the internal temperature of a roasting chicken.  These measurements are related to specific depths within the water column. The depth the instrument is at in the ocean is calculated from measuring the hydrostatic pressure (how much pressure the overlying water exerts on the instrument).  The CTD instrumentation cluster collects huge amounts of data – 8 measurements per second!  These are averaged and compressed into “bins” covering 1 meter segments.

The CTD and camera array waiting deployment.

In addition, the instrument cluster also measures the amount of oxygen dissolved (DO) in the water column.  As you probably already know, most organisms require oxygen to live (carry out cellular respiration).  The amount of oxygen dissolved in the water is directly correlated to how much life the water can support.  More oxygen = more life.  When water is warmer, it loses its ability to “hold onto” oxygen; cold water will contain more dissolved oxygen.  This is one reason why climate change and warming aquatic environments are of great concern.

Victor, Joey, and Joe deploying the camera array

After both the camera array and CTD have been deployed and retrieved, the final step at each site is to collect fish through the use of bandit reels located at three sites on the ship.  All three are located on the starboard (right hand) side of the ship.  Reel #1 is starboard (S), Reel #2 is starboard aft (SA), and Reel #3 is starboard stern (SS) at the back of the ship.  Reel #3 is where I helped the attempts to collect fish.  Each bandit reel has ten hooks of the same size (8/0, 11/0, and 15/0) attached to a 300-lb test monofilament.  Each of the hook sizes are rotated around the stations throughout the day.  These hooks are baited with slices of frozen Atlantic mackerel.  A 10 pound weight is attached to the end of the line, the baited hooks attached, and the line let out until it hits bottom.  Then, a float is attached and the line is left for five minutes before being reeled back in.

Any fish that are caught are identified and have their length and mass measured.  Afterwards, the fish’s otoliths are removed and it is opened to determine its gender and have its reproductive stage assessed.  More on the fish specifics to come!

Janet Nelson: Third Day at Sea – June 17, 2012

NOAA Teacher at Sea
Janet Nelson Huewe
Aboard R/V Hugh R. Sharp
June 13 – 25, 2012

Mission: Sea Scallop Survey
Geographic Area: North Atlantic
Sunday, June 17, 2012

Data from the Bridge:
Latitude: 39.48.57 North
Longitude: 07226.9 West
Wind Speed: 12 kt
Air temp: 17.8 C
Approximate wave height: 4-6 feet

Science and Technology Log:

Current time: 1630 hours. We have been operating the HabCam since I came on duty at 1200 hours. It is interesting watching what the HabCam is flying over. Depending on the area, it might be littered with sea stars (a predator of small scallops) or it may be littered with hundreds of sand dollars (a food of ocean pout – ugly looking fish). In the case of sea stars, you won’t see many adult scallops, which, makes sense if the young ones are getting eaten. All in all, the research here is pretty straight forward. We are looking to see what predation is affecting the scallops, basically, food chains and habitat. On the side scan sonar, you can see past dredge marks from fishing vessels that have come through. We have passed over some old fishing nets, gear, a shoe, a can, odd things like that.

I have been “flying” the HabCam which is pretty cool. You need to keep the cam approximately 2.5 to 1.5 meters off the sea floor which can be a tricky thing to do. Fun, but tricky. While the cam is flying, the “co”pilot” is scanning images looking for various critters, specifically scallops. It can be a process that makes your eyes go buggy after about 1/2 to 3/4 hours so we switch off every now and then. This specific episode of the HabCam has been running for approximately 14 hours and has traveled about 177 nautical miles. That is a lot of sea floor!!

In approximately 35 minutes we will deploy the scallop dredge. The dredge will run for 15 minutes spurts. We will run six of them back to back. When the dredge comes up we will sort all the species into their buckets, count and measure the scallops, count and measure the fish, toss back the sand dollars, star fish and most often the crabs. The scallops that are two years old or younger we measure and toss back into the sea. The older scallops get measured, sexed, weighed and sometimes shucked. Word is there will be scallops for supper!

Personal Log:

I now understand what it is like to be in a washing machine with no end! I have not been able to blog prior to now because I have been spending a great deal of time in my bunk and in the head. My diet consists of saltine crackers and water. Occasionally, I can sneak in a piece of fruit, but not often. So far, this experience has not really begun yet. I have, however, been able to go 24 hours with no loss of stomach content. That’s a good sign, I hope. Sleep has been good and I feel rested (for the most part). The crew on the ship is awesome and I could not ask for a better chief scientist! Everyone was very understanding when I was sick and cut me slack for not being able to pull my weight. I think the crying helped soften them up. I was looking forward to big seas and water, not so much any more. I beg for calm seas and light winds. Perhaps I will be able to get some photographs of me working for the next blog, but until then, I will be happy with just keeping my lunch down!

Cheers!


Valerie Bogan: June 15, 2012

NOAA Teacher at Sea
Valerie Bogan
Aboard NOAA ship Oregon II
June 7 – 20, 2012

Mission: Southeast Fisheries Science Center Summer Groundfish (SEAMAP) Survey
Geographical area of cruise: Gulf of Mexico
Date
: Friday  June 15, 2012

Weather Data from the Bridge:
Sea temperature 28  degrees celsius, Air temperature 26.4 degrees celsius, calm seas.

Science and Technology Log

The scientific device for this blog entry is called the Bongo net.  This apparatus is actually two nets which are mounted on a metal frame.  Each net has a diameter of 60 cm and is 305 cm long with a cod end which is the narrowest part of the net to catch the plankton (both plants and animals).  At the opening of each net is a flow meter which records the amount of water that passes through the net in liters. This allows the scientists to calculate the total population of each type of plankton without having to collect all the plankton in the area.  This is done by first finding out how many individuals there are of each species in the sample.  Then you calculate the number of liters in the transect (sample area) by multiplying the length of the transect by the width of the transect to find the area in square meters.  To find the volume, you multiply the area by the depth which will give you the amount of water in cubic meters.  Lastly you have to take the volume in cubic meters and convert it to cubic liters.  Now that you have found the amount of water in the transect you are ready to find the number of each species of plankton in that amount of water.  To do this you take the number of individuals in the entire sample and divide it by the amount of liters which flowed through the net during sampling to find the number of the species per liter.  Then you multiply that number by the total amount of liters in the transect which gives you an estimate of how many of that species exist in that part of the Gulf of Mexico.

Bongo nets
In this picture I am helping Jeff bring the Bongo nets back on board the ship. (Picture by Francis Tran)

NOAA personnel aren’t the only scientists on board. There is also a volunteer named Marshall Johnson, who just finished his master’s degree at the University of South Alabama where he was working on a project involving larval fish and what they eat.  He chose to come on this cruise in order to help a fellow student collect samples for her Master’s degree.  Thus far he has been amazed by the vast array of sea life that have shown up in our nets and have been seen swimming around our ship.  He has almost finished his Master’s degree and his dream job would be to captain a charter boat so he can share his love of sea life and fishing with other people.  His advice for middle school students, “Dream big and follow your goals”.

Marshal Johnson
Marshal holding two of his favorite species in the dry lab.

We also have a NOAA intern on board named Francis Tran who is going into his junior year at Mississippi State University where he is studying electrical engineering.  He found out about the internship through his university and applied by submitting an essay and references to the coordinator of the program.  His advice for middle school students, “do something you love, don’t settle”.

Francis Tran
Francis with his favorite animal the brown shrimp.

Personal Log

We have been at sea for one whole week and honestly it is going better than I expected.  I was uncertain if I could live on a ship for this amount of time due to my intense independence.  I’m not used to giving up control of where I am and what I am doing so I feared I would be tempted to jump overboard and start swimming to shore by now.  However I have found that I’m quite content to stay on the ship and am enjoying my time at sea immensely.  However, I do miss my workouts. There is some exercise equipment on board but finding the time to use it is impossible.  I also miss my daily yoga practices but with the ship pitching from side to side unpredictably I’m afraid of giving it a try because it is quite possible I would be doing downward facing dog pose and the ship would pitch me head first into a wall.

In order for a ship to stay at sea for an extended time it must have a well-stocked galley (kitchen) and serve excellent food.  As I have mentioned before, the shifts are long and don’t exactly match up with normal meal times so it is important for the crew to be able to grab a little something in between meals.  For example since my shift starts at midnight I’m hungry for breakfast at about 2 a.m., not the normal breakfast time, but I’m able to pour myself some cereal so that I am working with a full stomach and am able to concentrate on my work.  However, we do have three wonderful meals prepared for us each day.  Paul and Walter are the men who work to make sure the crew and scientists are well taken care of when it comes to mealtimes.

The galley
Alonzo and Chris hanging out in the galley having a little snack.

Janet Nelson: Introduction – NOAA Teacher at Sea – June 14-25, 2012

NOAA Teacher at Sea
Janet Nelson Huewe
Aboard R/V Hugh R. Sharp
June 13 – 25, 2012

Pre-Cruise:

Greetings from Lewes Delaware! I am Janet Nelson Huewe. I live in Bemidji, MN with my husband, Gary. Together we have five grown children and two grand children. Bemidji is the home of Paul Bunyan and Babe the Blue Ox.

Good thing Mr. Bunyan left so many footprints that created lakes because my husband LOVES to fish! I have been teaching biology for ten years at Red Lake High School on the Red Lake Indian Reservation. I enjoy learning and doing new things that I can bring back into my classroom. I am very excited to have been selected by the National Oceanic and Atmospheric Administration (NOAA) to participate in their Teacher at Sea program. I will be working on the R/V Hugh R. Sharp in the North Atlantic conducting a sea scallop survey.

I arrived into Lewes on June 13th and boarded the ship. The winds have been high, blowing anywhere from 25 to 40 mph causing waves to reach around 12 feet, so we are still in port, waiting for calmer seas. When we do set sail, we will be using a device called a HabCam (HABitat mapping CAMera system). HabCam is a tool that will provide us with a unique glimpse at the seafloor through optical imaging.

The HabCam vehicle is lifted over the edge of the ship by a winch and then “flies” over the ocean bottom taking six images a second creating a continuous image ribbon. On the surface we will get real-time images and data in a completely non-invasive way.  From the images we can learn about ecosystem change over different time and space scales, calculate biodiversity, classify habitats, map hard to survey species, learn about invasive species, and promote interest in ocean and ecosystem science. HabCam can also provide data to scientists and fishery managers to help them make more informed decisions and to help understand ecosystem change.

We will also deploy a scallop dredge (on the right). This device, however, is more invasive. The dredge will physically skim the bottom of the ocean to collect live specimens. From there, I will help sort and count the scallops and any other critter that gets taken up by the dredge. Maybe I will be able to eat a few scallops later? We’ll see. Until then, keep checking my blog to find out more exciting news from the R/V Hugh R. Sharp!