Kaitlin Baird: The Importance of Sound, September 16, 2012

NOAA Teacher at Sea
Kaitlin Baird
Aboard NOAA Ship Henry B. Bigelow
September 4 – 20, 2012

Mission: Autumn Bottom Trawl Survey with NOAA’s Northeast Fisheries  Science Center
Geographical Area: Off the Coast of Maryland
Date: September 16th
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Location Data:
Latitude: 37’72.10
Longitude: 75′ 17.02

Weather Data:
Air Temperature: 21.0 (approx.70°F)
Wind Speed: 8.71 kts
Wind Direction:  West
Surface Water Temperature: 22.99 °C (approx. 73°F)
Weather conditions: overcast

Science and Technology Log:

It’s day 13 aboard the Henry B. Bigelow and we have made the turn at our southern stations off the coast of North Carolina and are working our way back to port at some of our inshore stations off the coast of Maryland. You may wonder how each of the stations we sample at sea are chosen? The large area of Cape May to Cape Hatteras are broken into geographic zones that the computer will assign a set amount of stations to, marking them with geographic coordinates. The computer picks a set number of stations within each designated area so all the stations don’t end up all being within a mile of each other. Allowing the computer system to pick the points removes human bias and truly keeps the sampling random. The vessel enters the geographic coordinates of the stations into a chartplotting program in the computer, and uses GPS, the Global Positioning System to navigate to them.  The GPS points are also logged on a nautical chart by the Captain and mate so that they have a paper as well as an electronic copy of everywhere the ship has been.

You may wonder, how does the captain and fishermen know what the bottom looks like when they get to a new point? How do they know its OK to deploy the net? Great question. The Henry B. Bigelow is outfitted with a multibeam sonar system that maps the ocean floor.  Some of you reading this blog might remember talking about bathymetry this summer. This is exactly what the Bigelow is doing, looking at the ocean floor bathymetry. By sending out multiple pings the ship can accurately map an area 2.5-3 times as large as its depth. So if the ship is in 20 meters of water it can make an accurate map of a 60 meter swath beneath the boats track. The sonar works by knowing the speed of sound in water and the angle and time that the beam is received back to the pinger . There are a number of things that have to be corrected for as the boat is always in motion. As the ship moves through the water however, you can see the projection of the bathymetry on their screen below up in the wheelhouse. These images help the captain and the fisherman avoid any hazards that would cause the net or the ship any harm.  A good comparison to the boats multibeam sonar, is a dolphins ability to use echolocation. Dolphins send their own “pings” or in this case “echos” and can tell the location and the size of the prey based on the angle and time delay of receiving them back. One of the main differences in this case is a dolphin has two ears that will receive and the boat just has one “receiver”. Instead of finding prey and sizing them like dolphins, the ship is using a similar strategy to survey what the bottom of the sea floor looks like!

bathymetric data being collected by multibeam sonar technology on the Bigelow
Bathymetric data being collected by multibeam sonar technology on the Bigelow
Bigelow multibeam sonar (NOAA)
echolocation schematic courtesy of the Smithsonian Institute
Echolocation schematic courtesy of the Smithsonian Institute

Personal Log:

The last few days I have been trying my hand at removing otoliths from different species of fish. The otoliths are the ear bones of the fish. Just like the corals we have been studying in Bermuda, they are made up of calcium carbonate crystals. They are located in the head of the bony fish that we are analyzing on the cruise. A fish uses these otoliths for their balance, detection of sound and their ability to orient in the water column.

If you remember, at BIOS, we talk a lot about the precipitation of calcium carbonate in corals and how this animal deposits bands of skeleton as they grow. This is similar in bony fish ear bones, as they grow, they lay down crystalized layers of calcium carbonate. Fisheries biologist use these patterns on the otolith to tell them about the age of the fish. This is similar to the way coral biologists age corals.

I have been lucky enough to meet and learn from scientists who work specifically with age and growth at the Northeast Fisheries Science Center Fishery Biology Program. They have been teaching about aging fish by their ear bones. These scientist use a microscope with reflected light to determine the age of the fish by looking at the whole bone or making slices of parts of the bone depending on what species it is. This data, along with lengths we have been recording, contribute to an age-length key. The key allows biologists to track year classes of the different species within a specific population of fish. These guys process over 90,000 otoliths a year! whew!

The information collected by this program is an important part of the equation because by knowing the year class biologists can understand the structure of the population for the stock assessment.  The Fishery Biology program is able to send their aging and length data over to the Population Dynamics Branch where the data are used in modeling. The models, fed by the data from the otoliths and length data,  help managers forecast what fisheries stocks will do. It is a manager’s job to the take these predictions and try to balance healthy fish stocks and the demands of both commercial and recreational fishing. These are predictive models, as no model can foresee some of the things that any given fish population might face any given year (ie food scarcity, disease etc.), but they are an effective tool in using the science to help aid managers in making informed decision on the status of different fish stocks. To learn more about aging fish please visit here.

otoliths (fish ear bones) that i removed from a Butterfish
Otoliths (fish ear bones) that I removed from a Butterfish
You can see here is an otolith that is 1+ years old. It was caught in September and that big 1st band is its Year 0. You can see that the black dot demarks the fish turning 1. You can then see the Summer growth but not yet the winter growth. This fish has not yet turned 2, but it will Jan 1st of the next year.
You can see here an otolith that is 1+ years old. It was caught in September and that big 1st band is its Year 0. You can see that the black dot demarks the fish turning 1. You can then see the Summer growth but not yet the winter growth. This fish has not yet turned 2, but it will be Jan 1st of the next year.

I have to end with a critter photo! This is a Cobia (Rachycentron canadum).

Me and a Cobia caught off the coast of Maryland
Cobia caught off the coast of Maryland

Thanks for reading!

Kaitlin Baird: Some Essential Tools! September 14, 2012

NOAA Teacher at Sea
Kaitlin Baird
Aboard NOAA Ship Henry B. Bigelow
September 4 – 20, 2012

Mission: Autumn Bottom Trawl Survey with NOAA’s North East Fisheries  Science Center
Geographical Area: Off the Coast of Cape Hatteras, North Carolina
Date: September 14th
.

Location Data:
Latitude: 35′ 10.67
Longitude:  75’33.60     

Weather Data:
Air Temperature: 23.40 (approx.74 °F)
Wind Speed: 2.17 kts
Wind Direction:  Southwest
Surface Water Temperature:2 7.61 °C (approx. 82°F)
Weather conditions: Sunny and fair

Science and Technology Log

One of the things I was curious about was the deployment of these large instruments and the technology that supports it. One of the keys to the deployment of things like the BONGO nets, Continuous Depth Recorders (CTD’s) and the trawl net itself are winches. A winch spools the wire cable that is hooked to all of the instruments and allows them to move up, down and out into the water column. With some of the instruments, like the BONGO’S and CTD casts, a retractable A-Frame is used to lower the cable from the winch. You can see the A-Frame on the right and the winch on the left in the photo below. This winch in particular controls the deployment of the net and connects to two winches on the stern that roll out the net to open up the mouth. The wire is constantly monitored from the bridge on the screen below and is automatically adjusted to maintain equal tension on both sides.

Winch for fishing nets, Tension monitor on winches from the bridge and A-frame
Winch for fishing nets, Tension screen for winches from the bridge and retractable A-frame

Once the net is run out with the aid of the winches, it is constantly monitored for its shape during the tow with a number of different censors attached to the net. There is an autotrawl system that sets the depth of the trawl and the tension of the wires. A Global Positioning System (GPS) plots the position of the net for each trawl so that it can be associated with all organisms caught in the tow. At the end of the tow the winches reel back the cable and a crane brings the net with the catch over to the “checker” where the net is unloaded!

Monitoring the position and shape of the trawl in the water
Monitoring the position and shape of the trawl in the water

Personal Log:

The fun part begins when the net opens and all the animals enter the checker. When all of the catch goes into the checker the scientists take a look at the catch, and remove anything too large to go up the conveyor belt. If a fish dominates the catch it will “run”. This means, as it goes down the conveyor belt it won’t be taken off and it will be weighed by the basketful and then a subsample will be taken for further analysis.

The fish are all divided up by species and electronically coded in the FSCS system to be measured. After they are measured, the system will prompt for further analysis for that particular species. If extra sampling of the fish is required,  it is labeled with a printed sticker for the species with a unique barcode that can be scanned to retrieve its record in the database.

tag for the organisms to designate its ID and what is to be done with it
Tag for the organisms to designate its ID and what is to be done with it

I thought I’d share some photos with you of some of the unique things we have seen so far fishing today. We are off the coast of Carolina and finishing up our Southern stations today into early morning!

Fish caught off of North Carolina
Fish caught off of North Carolina

Catch of the day! Thanks for reading!

Shark caught off of Carolina coast
Atlantic Sharpnose Shark caught off of Carolina coast

Kaitlin Baird: Let the Fishing Begin! September 8, 2012

NOAA Teacher at Sea
Kaitlin Baird
Aboard NOAA Ship Henry B. Bigelow
September 4 – 20, 2012

Mission: Autumn Bottom Trawl Survey with NOAA’s North East Fisheries  Science Center
Geographical Area: Atlantic Ocean steaming to south New Jersey coast
Date: September 8th
.

Location Data:
Latitude: 38° 44.58’   N
Longitude: 73 ° 39.30’  W       

Weather Data:
Air Temperature: 23.2°C (approx. 74°F)
Wind Speed: 5.05 kts
Wind Direction: from N
Surface Water Temperature: 25.29 °C (approx. 78°F)
Weather conditions: Sunny and fair

Science and Technology Log
Other than testing out the FSCS today and learning the ropes, I also learned about another type of tow we are doing on this cruise. When looking at fish stock assessment it is also important to look at the base of the food chain, you guessed it, plankton. Today we were specifically targeting zooplankton, microscopic animal drifters in the ocean that are an important food source for many of the fish and other invertebrates that we are surveying.

When I saw the nets go in, they looked a bit different than those on the R/V HSBC Atlantic Explorer, and I learned a new term, BONGO net. This is the tandem net which we are using  to tow for zooplankton at set locations while we are en route. Unlike the trawl net we tow these on the side of the ship verses the back so there is no interference by the wake made by the ship as it moves through the water. If you imagine a giant windsock with a plastic catchment at the end, this is what these nets look like. The pressure of the water moving through the net forces anything heavy to the “cod end” of the net and sieves the water out of the mesh that makes up the net.

The depth of the net tow is dependent upon bottom depth and protocol at each site, but they normally try to tow pretty close to the bottom (=/- 10 m). A separate, Conductivity, Temperature and Depth (CTD) recorder is also deployed with the nets to understand more about the ocean chemistry at set locations.  There is such a variability when towing for plankton (as it can be quite patchy) that having the two nets gives you more opportunity to capture the diversity of life that is out there. The nets are also two different mesh sizes so that they can catch zooplankton in different size classes.

Bongo Nets
Bongo Nets being deployed to 60 feet
Personal Log
It was great to get fishing today off of the coast of Maryland. We were all ready to sort anything that came down the conveyer belt. The species get sorted and then brought to the FSCS stations. Here they are measured along with anything else that needs to be done to them. I helped to get otoliths prepared and input data on gut contents, condition and sex.
Kaitlin in the wetlab with left eye and right eye flounder
Kaitlin in the wetlab with left eye and right eye flounder
One of the things I noticed were a lot of flounders, both left eye and right eye. That’s right folks, flounder usually start with one eye on each side of their heads and then eventually (species dependent) it migrates as they mature so that they sit on the bottom with both eyes on top of their heads. Depending on which way they migrate they are designated as “left eye” or “right eye” as you can see in the photos below. Did you know? These eyes can move independently of each other, pretty cool stuff!
Right Eye Flounder (Top) Left Eye Flounder (bottom)
Right Eye Flounder (Top) Witch Flounder
Left Eye Flounder (bottom) Four spot Flounder
Stay tuned for more critters! Here is just a shortlist of some that we saw today!

Rosette Skate
Little Skate
Tilefish
Goosefish
Chain dogfish
Fawn cusk-eel
Gulf stream flounder
Four spot flounder
Silver hake
Armored sea robin
LOTS of Squid

Bye for now!

Kaitlin Baird: All Ashore Who Are Going Ashore, September 6, 2012

NOAA Teacher at Sea
Kaitlin Baird
Aboard NOAA Ship Henry B. Bigelow
September 4 – 20, 2012

Mission: Autumn Bottom Trawl Survey with NOAA’s North East Fisheries  Science Center
Geographical Area: Atlantic Ocean steaming to south New Jersey coast
Date: September 6, 2012

Location Data:
Latitude: 41 ° 18.70’   N
Longitude: 71 ° 42.11’  W       

Weather Data:
Air Temperature: 20.5°C (approx. 69°F)
Wind Speed: 4.97 kts
Wind Direction: from N
Surface Water Temperature: 22.2 °C (approx. 72°F)
Weather conditions: Sunny and fair

Science and Technology Log

The purpose of our mission aboard the Henry B. Bigelow is the 1st leg of groundfish surveys from Cape May all the way down to Cape Hatteras with the Northeast Fisheries Science Center. The scientists aboard the ship are interested in both the size and  frequency of fish at different targeted geographic locations. We will be sampling using a trawl net at about 130 different stations along the way, some inshore and some offshore. We will be using a piece of technology called the Fisheries Scientific Computer System (FSCS). This system will allow us to accurately take baskets of different species of fish and code them for their lengths into a large database. This will give us a snapshot of fisheries stocks in the Northeast Atlantic by taking a subsample. The computer system also allows us to see if any other things need to be done with the fish once they are measured. Tasks like otolith (I’ll tell you about these later!) and gonad removal, fin clips or whole organisms sampling may also be done. The computer system will allow us to label each of these requests and assign it a code for scientists requesting samples from this cruise. Additionally, there are scales along with the system for recording necessary weights. We will be sorting fish first by species, and then running them all through the coded FSCS which you can see in the photo below.

Measuring board for fish
Board for magnetically measuring fish

We are currently on full steam to get our first tow in early tomorrow morning. You can track our ship using NOAA’s ship tracker system. Here we are positioned currently passing Block Island.

Ship Tracker with Current Location
NOAA Ship Tracker

Can’t wait to tell you more about the FSCS system when we start using it tomorrow!!

Personal Log

We have just pushed off the dock at 0900 and are headed South to start our first  trawl tomorrow morning. Everyone is getting used to the ship and some swells with a few storms in the Atlantic. I am really excited to get to see what comes up in our first tow. I have been assigned to the day watch which means that my shift runs from Noon-Midnight. The two other ladies that share our room will be on the night watch, so there will be a changing of the guard and some fresh legs and recorders.

Darcy and Caitlin
Darcy and Caitlin two other volunteers learning the ropes
All ready to go
Helly Hansen gear to keep us all dry.

I am looking forward to bringing you some cool fish photos soon! Hello to everyone back  in Bermuda! Stay safe..

Bye for now!!