Sue Zupko: 12 What’s in the Water?

NOAA Teacher at Sea: Sue Zupko
NOAA Ship: Pisces
Mission: Extreme Corals 2011; Study deep water coral and its habitat off the east coast of FL
Geographical Area of Cruise: SE United States from off Mayport, FL to St. Lucie, FL
Date: June 8, 2011
Time: 1900

Weather Data from the Bridge
Position: 25.3°N  79.6°W
Present weather: 3/8 Alto Cumulus
Visibility: 10 n.m.
Wind Direction: 065°true
Wind Speed: 10 kts
Surface Wave Height: 3 ft
Swell Wave Direction: 110°
Swell Wave Height: 3 ft
Surface Water Temperature: 28.4°
Barometric Pressure: 1013.2 mb
Water Depth: 363 m
Salinity: 36.28 PSU
Wet/Dry Bulb: 27.7/24.8

This blog runs in chronological order.  If you haven’t been following, scroll down to “1 Introduction to my Voyage on the Pisces” and work your way back.

Take this quiz before reading this post.

Bucket hanging by rope in water
Straining bucket

Dr. Diego Figueroa and I went fishing over the side of the ship this evening with a straining bucket to try to catch zooplankton (animals which cannot swim against the current–free floating).  We had no plankton net so we had to improvise.

Diego pouring a cup of water into a bucket from the bottom
Diego pours water into the bottom of the bucket

Diego, a zooplankton expert, got a plastic container like you’d use to store food in the fridge, and we headed to the lab with what we hoped would be a good catch.  He got a cup of salt water from the special faucet in the ship’s science lab and poured it into the bottom of the bucket.  As he poured the water, he had the plastic container at the top of the it to retrieve our catch.

Diego peering into a plastic food container with water
Diego examines our catch

We  then examined the container to see what the naked eye could find.

Wow!  Our first specimen was a shrimp.  It’s huge.  Well, huge in comparison to the other zooplankton.  We still saw it best under the microscope.  He left that in to container to pull out later and caught some copepods with an eye dropper.

White buglike creature, transluscent, with long antennae
Calanus copepod

Eureka!  There were at least six Calanus copepods.  Cope– is Greek for oar or handle and pod–  means foot or limb.  These are very common off the coast of Florida and about 80% of all the zooplankton on the planet are some type of copepod.  He explained that the Calanus has five rows of legs that flap downward (like the doggie paddle that most of of use when learning to swim) in order to move around.  The Calanus eats phytoplankton (algae), making it a primary consumer.  It has five pairs of mouth parts.  The hairy seta (the plural is called setae)  act like a sieve when it eats.  This is so interesting.  The Calanus opens its mouth parts and gathers water molecules toward its body.  Then, it pulls its mouth parts in and squeezes the water out. What’s left is a scrumptious meal of diatoms.  The grazing copepod we watched was a female.  Her tail is shaped differently than the male’s tail.

The shrimp is at least 20 times bigger than the Calanus.  Diego hasn’t studied the shrimp like he has the copepods.  That’s because the shrimp are one of the bigger zooplankton and large ones make up only about 5% of all zooplankton.  He says that there are more copepods in the world than all the insects combined.  That makes sense since the earth’s surface is  71% water.

Jellyfish with tentacles spread against a black background with white particles near
Jellyfish in snow

When the ROV was flying through the ocean, we always saw snow in the water.  I used to scuba dive a lot and I never really noticed the snow.  If it was deep, they weren’t there.  Andy David explained that we see them so well since we’re shining light on them.  These are mostly zooplankton in the water.  In addition, there is a bunch of decaying organic matter called detritus flying along.

Curled up bee looking creature
Hyperiid

Further examination of the water yielded a Microsetella rosea, a hyperiid, and a Chaetognath (arrow worm). The Microsetella is a detritis-eating filter feeder, but it is only about 1/5 the size of the Calanus.   Well, with micro in its name, small had to figure into it somehow.  Since it’s small, it eats smaller things.

Clear ghost-like arrow-shaped creature surrounded by lines of white
Arrow worm

The arrow worm is like something from a horror movie because it attacks its prey viciously (it’s a carnivore and is a voracious predator).  I asked what all the other floating bits were in the water.  Detritus.  It’s the snow we kept seeing.

White shrimp with one claw showing viewed through microscope
Shrimp

Diego has a special camera which attaches to the microscope.  We would examine the zooplankton in the petri dish and then he would take off the microscope eyepiece and insert his camera.  Then, through the viewfinder, he would try to find the zooplankton resting somewhere.  Apparently, they don’t rest much, but he still got photographs.

Diego searches for our catch under the microscope while Sue looks on
Diego hunting for zooplankton

I really enjoyed this mini lab.  Diego taught me things about plankton in general and I now better understand this amazing  world of particulates in the ocean a bit better.  Jana and I had gone on deck last night to see what it was like in the pitch black.  We discovered it isn’t totally dark, though your eyes do have to adjust.  The moon kept peeking from between clouds off the starboard (right) side and lights shone from portholes below deck.  These lights reflected off the waves and were so fascinating to watch.  I’ve only had a beachside view of the ocean at night so this was a real treat.  Jana and I watched for bioluminescence in the water, a sign of some plankton.  We found little sparkles of green in the wave and hypothesized these were zooplankton.  After explaining what we had seen to Diego, he confirmed that these were zooplankton rather than phytoplankton.  Zooplankton have little sparkles in turning water while phytoplankton will cover a large area and just glow.  Too interesting.

Special thanks to Diego for sharing his knowledge with me after a long day and to Jana for helping get some pictures of this.

And the answer to the quiz above….Copepods.  They are so small you don’t notice them, but there are almost as many copepods as there are grains of sand on the beach.  It’s hard to fathom that many creatures swimming around.  Diego said that they eat the phytoplankton so fast that often there are more zooplankton than phytoplankton.

Kimberly Lewis, July 8, 2010

NOAA Teacher at Sea Kimberly Lewis
NOAA Ship: Oregon II
July 1 -July  16 2010

Mission: SEAMAP Summer Groundfish Survey
Geographical Area of Cruise: Gulf of Mexico
Date: Sunday, July 8, 2010

July 8, shallow trawls to deep trawls to no trawling today

My view from lab at sunrise
My view from lab at sunrise

Weather Data from the Bridge 

Time: 2015 (8:15pm)
Position: Latitude = 27.20.39 N; Longitude = 096.35.21 W
Present Weather: Could cover 90%
Visibility: 4-6 nautical miles
Wind Speed: 15 knots
Wave Height: 2-4 feet
Sea Water Temp: 28.6 C
Air Temperature: Dry bulb = 28.5 C; Wet bulb = 26.7 C
Barometric Pressure: 1008.27 mb

Science and Technology Log

Since setting out on Friday we’ve headed south along the Gulf coast of Texas almost to the Mexican border, and now we’re heading back north but farther offshore, in deeper water. As a result our trawls are pulling up a deep-water assemblage of species different from those we saw in shallower waters a few days ago. There is still no sign of oil in this part of the Gulf, but we’re still taking samples of fish and shrimp for analysis to make sure there’s no contamination here from the BP- Deepwater Horizon oil spill.

Ten-foot seas are predicted for tonight so we’re heading north along the Texas coast, away from the storm, and we’ve put away the fishing gear until it gets calmer.

Last log we talked about FSCS (Fisheries Scientific Computer System). So what is it, how is it used, and what is so great about it?

FSCS, commonly pronounced ‘fiscus’, is an automated system for recording the massive amount of biological and oceanographic data generated 24 hours a day by NOAA scientists during fisheries surveys. During a trawl survey, fish and invertebrates from each haul are sorted, counted and weighed by species. Scientists record data from individual fish, such as sex, weight, length and even stomach contents, resulting in tens of thousands of new data points every day. Before NOAA rolled out FSCS in 2001 aboard the NOAA ship Albatross IV, scientists recorded all data by hand, an incredibly tedious process. With FSCS, however, data are recorded digitally which is much faster, allows integration of biological and oceanographic data, and enables NOAA to obtain critical real-time information to assess and manage the health of the marine ecosystem and individual fish stocks.

Here I am entering data at one of the two FSCS stations aboard the Oregon II.

FSCS uses a Limnoterra FMB4 (fish measuring board) which has a magnetic pen to upload the length of an organism within a millimeter (mm) range, and computer software that annotates all of the data with information such as length, mass, sex, etc. The software also lists species scientific names which can be selected into a short list so scientists can more quickly select organisms from a list. Special labels can be printed for specimen samples that are to be shipped to other scientists and to the National Seafood Inspection Laboratory which was started in Pascagoula, MS.

Personal Blog:
My last shift Wednesday 0000-1200 hrs. was very good. I was over my sea sickness, I had 8 hours straight of good sleep, and we did a good job on night shift with keeping up with our stations.
This photo shows a brown shrimp being measured for length. The magnetic pen to the right of the shrimp marks the spot, the measurement is then sent to the computer.
This photo shows a brown shrimp being measured for length. The magnetic pen to the right of the shrimp marks the spot, the measurement is then sent to the computer.
Our chef, Walter has been feeding us very well. The portions are so big that I can’t clean my plate. As you can guess, we have had shrimp several times, and after measuring and identifying shrimp every night for 12 hours I don’t know if I will be that anxious to eat shrimp for a while!My Thursday 0000-1200 shift was canceled due to weather as mentioned in the earlier part of today’s blog. So now I am catching up on emails, blogs, and laundry. We should be trawling again within the next 24 hours.

Kimberly Lewis, July 7, 2010

NOAA Teacher at Sea Kimberly Lewis
NOAA Ship: Oregon II
July 1 -July  16 2010

Mission: SEAMAP Summer Groundfish Survey
Geographical Area of Cruise: Gulf of Mexico
Date: Sunday, July 7, 2010

July 7, Science is dirty 🙂

Here I am getting ready to enter data about one of the MANY shrimp that I have seen over the past few days.
Here I am getting ready to enter data about one of the MANY shrimp that I have seen over the past few days.
Personal Log:
This was the first night (day) that I actually slept straight thru. 8 hours of sleep has never felt so good!The scientist aboard the Oregon II have a very important job to do and they work very hard. Sometimes when people think of scientist they think of a nice clean lab with everyone wearing white coats. Not the case here! It not uncommon to be shoveling fish into buckets.

Here is a photo of a bucket of organisms that are being measured.
Here is a photo of a bucket of organisms that are being measured.

Our ship’s tracker has not been updated since we left Galveston so if you see we are still there, we are not. Hopefully it will be updated soon.

Well, I do have to go because my shift started 35 minutes ago and there are things to do. I will try to remember to take photos tonight. We collected a sea horse yesterday, but I didn’t get to take my photo before it was discarded, I was out doing a titration.

Bye for now.

Kimberly Lewis, July 5, 2010

NOAA Teacher at Sea Kimberly Lewis
NOAA Ship: Oregon II
July 1 -July  16 2010

Mission: SEAMAP Summer Groundfish Survey
Geographical Area of Cruise: Gulf of Mexico
Date: Sunday, July 5, 2010

Weather Data from the Bridge 
Time: 1000 hours (10:00am)
Position: Latitude = 27.58.38 N; Longitude = 096.17.53 W
Present Weather: partly cloudy, haze on the horizon
Visibility: 8-10 nautical miles
Wind Speed: 17 knots
Wave Height: 2-4 feet
Sea Water Temp: 28.6 C
Air Temperature: Dry bulb = 29.2 degrees Celsius; Wet bulb = 26.1 C
Barometric Pressure: 1011.1 mb

Science and Technology Log

The purpose of the SEAMAP Summer Groundfish Survey is to collect data for managing commercial fisheries in the Gulf of Mexico. SEAMAP stands for Southeast Area Monitoring and Assessment Program.

Right now we’re working along the Gulf Coast of Texas, far from the BP Deepwater Horizon oil spill, so we’re not seeing any effects of oil here. However, part of our mission is to collect fish for testing to make sure that oil spill has not impacted the marine life in this area and that the fish and shrimp from Texas are safe to eat. We’re also collecting water samples from this area to use as baseline data for the long-term monitoring of the impact of the oil spill in Gulf.

There are four main ways the Oregon II is gathering SEAMAP data on this cruise, and we’ve already learned how to use all of them. The main way we collect data is by trawling, and this is where we do most of our work on the Oregon II. In trawling, we drag a 42’ net along the bottom for 30 minutes, haul it up, and weigh the catch. We then sort the haul which involves pulling out all of the shrimp and red snapper, which are the most commercially important species, and taking random samples of the rest. Then we count each species in the sample and record weights and measurements in a computer database called FSCS (Fisheries Scientific Computer System).

Here on the Texas coast, where we’re working now, the SEAMAP data is used to protect the shrimp population and make sure that it’s sustained into the future. Since 1959, Texas has been closing the shrimp fishery seasonally to allow the population to reproduce and grow. The SEAMAP data allows Texas to determine the length of the season and size limits for each species. Judging by our trawls, the Texas shrimp population is healthy.

Here I am flushing out the CTD to prepare for the next use.

Another method of data collection is the CTD, which stands for Conductivity, Temperature, and Depth. The CTD takes measurements from the surface to the bottom, creating a CTD profile of the water column at our trawling locations. These data are important to assess the extent of the hypoxic “dead zone” in the Gulf of Mexico, and to relate the characteristics of our trawling hauls to DO levels. SEAMAP data collected since the early 1980s show that the zone of hypoxia in the Gulf has been spreading, causing populations to decline in hypoxic areas.

We also use Bongos and Neustons to gather data on larval fish, especially Bluefin Tuna, Mackerel, Gray Triggerfish, and Red Snapper. The Neuston is a rectangular net that we drag along the surface for ten minutes to collect surface-dwelling larval fish that inhabit Sargassum, a type of seaweed that floats at the surface and provides critical habitat for small fish and other organisms. We drag the Bongos below the surface to collect ichthyoplankton, which are the tiny larvae of fish just after they hatch. The Neuston and Bongo data on fish larvae are used for long-term planning to maintain these important food species and keep fish stocks healthy.

In this photo I am untying the knots at the bottom of the Neuston to gather the ‘catch’. You can see a lot of Sargassum in this haul.
In this photo I am untying the knots at the bottom of the Neuston to gather the ‘catch’. You can see a lot of Sargassum in this haul.

Personal Log

Day 1: docked
Day 2: we left the port in Galveston (July 2). My shift started immediately but by the time we actually left port and reached the first station my shift was over 1200 noon. So far so good!

Day 3: 2400 hrs or Day 4: 00:00 hrs.
– the sea sickness is getting me a little now. The rough seas are most likely the main culprit, however, I have not been out to sea for this period of time before. Once the seas calm down I should have a better idea. I do know this, my shift leader Alonzo and the chief scientist Andre have both been very understanding of my adjustment to sea life. The entire staff on board for that matter are very understanding and concerned for everyone’s well being.
– This was my first full shift. We are BUSY aboard the Oregon II ! A catch will come in for processing, which I will explain processing on my next blog, and we sometimes are still processing the last batch or we are up front taking CTD samples and bringing in our bongos/neustrons. I have learned a lot of things in a short period of time.

July 4, 2010 – Lots of stations (places where we deploy our nets) tonight. We actually got a little backed up. There are five people on my shift and it takes all 5 of us working non-stop to get the job done.

July 5, 2010 – I am feeling better today, so much that I uploaded my blog! I keep waking up at 5pm and unable to go back to sleep, but I am going to try now to catch a couple more hours as my shifts starts again in 3 hours.

Mechelle Shoemake, June 23, 2010

NOAA Teacher at Sea
Mechelle Shoemake
Onboard NOAA Ship Oregon II
June 19 – 30, 2010

Mission:  SEAMAP Groundfish Survey
Geographical Area of Cruise:  Northwestern Gulf of Mexico
Date:  Friday, June 25, 2010

Weather Data from the Bridge
Time: 1300 hours (1:00pm)
Position: Latitude = 30.22.02 N; Longitude = 088.33.80 W
Present Weather: partly cloudy
Visibility: 8-10 nautical miles
Wind Speed: 6 knots
Wave Height: 1-2 feet
Sea Water Temp:  30.9 degrees Celsius
Air Temperature: Dry bulb = 32.7 degrees Celsius; Wet bulb = 23.2 degrees Celsius

Science and Technology Log
Hello everyone!  I am Mechelle Shoemake from Laurel, MS.  I am a teacher at South Jones Elementary school.  I was chosen by NOAA to participate in their TAS (Teacher at Sea) program.  I was chosen to sail aboard NOAA Ship Oregon II.

Here I am aboard the Oregon II, ready to sail!

The Oregon II conducts a groundfish cruise in the summer and fall across the northern Gulf of Mexico from Alabama to the Mexican Border in depths between 5 and 60 fathoms.  The Oregon II conducts strong bottom trawling.  This is a type of fishing where you drag a net along the sea floor.  The primary sampling objective in the summer is to determine the abundance and distribution of shrimp by depth.  Since shrimp are animals that live near the sea floor, bottom trawling is the best way to catch them.  Due to the recent Deepwater Horizon/BP oil spill, we will be gathering samples of oiled shrimp and fish for further testing to be done.

We will be studying three types of shrimp:  white, pink and brown shrimp.   For more information about these shrimp, go to http://www.dnr.sc.gov.  This website explains how to identify the different species.

The bow (front) of the Oregon II, as she sits tied to the dock in Pascagoula.

We have had a slow start on the Oregon II due to repairs being made to the vessel that were necessary to keep  her in service for the next 6-8 years.  Our date of departure changed many times. We finally set sail on Wednesday, June 23, 2010.  Before we reached our destination, we started having some small problems with the vessel.  We turned around and we are now sailing back home to Pascagoula so repairs can be made.   Although we had to come back to port, we did sail for many hours.  During that time I had a lesson in line tying.  Line is the word used for rope when you’re on a ship.  This is task that many skilled and experienced sailors learn.  Believe me, it is harder than it looks.

Learning to tie line knots is harder than it looks!

I also had a lesson on how to read nautical charts and how to chart the longitude and latitude of a certain point. My first morning on the ship was breathtaking. The sunrise was beautiful, as you can see in the picture below.   Personal Log My first few hours at sea were not the greatest in the world.  I came prepared for sea sickness…maybe a little TOO prepared.  I was beginning to wonder if I would make it on the Oregon II.  But, thanks to Lindsey, our XO, she suggested that I remove my “sea patch” from behind my ear.  Wow, what a miracle!  I was no longer sick!  Lesson to the wise:  don’t overdose with the medicine.  Question of the Day How many feet are in a fathom?

Animals Seen Today: Dolphins, Pelicans

Sunrise over the Gulf of Mexico