Kathleen Harrison: Finding Fish, July 12, 2011

NOAA Teacher at Sea
Kathleen Harrison
Aboard NOAA Ship  Oscar Dyson
July 4 — 22, 2011

Location:  Gulf of Alaska
Mission:  Walleye Pollock Survey
Date: July 12, 2011

Weather Data from the Bridge
Air Temperature:  10.15° C, Sea Water Temperature:  7.6° C
True Wind Speed:  12.26 knots, True Wind Direction:  191.38°
Very foggy, visibility < 1/4 mile
Door open on bridge to hear other fog horns
Latitude:  56.07° N, Longitude:  158.08° W
Ship Heading:  24°, Ship Speed:  11.7 knots

Science and Technology Log:  Finding Fish

In a previous log, I talked about using nautical charts and trawling as 2 methods used in calculating the biomass of Walleye Pollock in the Gulf of Alaska.  Finding the fish to catch is tricky business in the ocean, they don’t usually come up to the surface and say hi.  The NOAA scientists working on the Walleye Pollock Survey spend a lot of time looking for fish, so that their trawling efforts won’t be wasted (that is the general idea, anyway).  How do you look for fish in the ocean?  With acoustics, of course, another method used in calculating biomass.

Acoustics is the use of sound, which will travel through the water, and bounce off of objects that it hits.  There is Simrad ER60 echosounder  that operates 5 transducers mounted on the center board under the ship, and it continuously sends out sound waves.

multibeam sonar mapping the ocean floor
The Simrad ER60 echosounder sends sound directly under the ship, finding fish anywhere in the water column.

In the Acoustics Lab of the Oscar Dyson, the data from the multi-beam echosounder is being studied all of the time.  The sound waves leave the device, travel down, hit the swim bladder in a fish (the fish doesn’t even know), and reflect back to the ship.  The time it takes for the sound to return is used to calculate the distance down, and a computer generated picture called an echogram is produced.

echogram shows surface, fish, and bottom
The echogram shows plankton at the surface in blue/green, fish near the bottom as red/brown spots, and the ocean floor as a red/brown line.

The echogram tells the scientists several things.  The surface of the water is shown, with surface dwelling organisms such as krill, phytoplankton, zooplankton, and juvenile fish.  The fish that are mid-water are shown as well, showing up as red or blue dashes or blobs.  This is where the Pollock usually are.  Some fish are bottom feeders, and the red and blue dashes on the bottom represent those.  The ocean floor is also shown, which is very important when choosing which type of trawl to use.   If the bottom is flat, the Poly Nor’Easter could be used to capture to fish on the bottom.  The Aleutian Wing Trawl might be used in mid water if the bottom is rocky and irregular.

Now, looking at the fish from the surface is nice, but wouldn’t it be better to see them close up?  Of course!  The scientists have another tool at their disposal, and no, it isn’t me diving down to the fish (brrr).  This tool is called a Drop Target Strength, or DTS.

echosounder can be dropped into water
The Drop Target Strength (DTS) can be lowered into the water, and get closer to the fish. The information is fed into the computer by a water proof cable.

About once a day, or every other day, the DTS is lowered over the side, and it starts sending out sound waves (3 pings/second), just like the echosounder mounted on the ship.  The advantage with the DTS, though, is that it is closer to the fish, giving a more detailed and accurate picture.  Individual fish can be sighted.  Taking a picture of a fish is kind of like taking a picture of a toddler, they don’t hold still very well.  So, a count of the fish on the echogram might not be exact.  Also, they might change the angle of their body, making the sound wave reflect off their swim bladder at a different angle.  The colors on the echogram are significant:  brown and red mean a strong signal, yellow is medium, and green and blue indicate a weak signal.

echogram shows individual fish
Studying the echogram from the DTS gives scientists a better picture of where the fish are. Each individual wavy line is probably a separate fish.

The scientists will study the echograms to determine where the fish are, and make a decision to fish or not.  Once fishing begins, they will move from the acoustics lab to the bridge, and study the echograms there.  An estimate of how many fish are in the net is made, and then the scientists will ask the crew to “haul back” the net.   (I am learning a whole new language!)  Then, things get very busy as we head to the fish lab to process the fish.

scientists at their desks in the acoustics lab
Here are the NOAA scientists that I am privileged to work with on the Oscar Dyson: (left to right) Darin Jones, Fish Biologist, Denise McKelvey, Fish Biologist, Neal Williamson, Chief Scientist.

New species seen:

Giant Pacific Octopus (juvenile, 1 cm)

Opalescent Squid

Chinook (King) Salmon

Egg yolk jelly fish

Sculpin (juvenile)

North Pacific sea nettle

Spud sponge

tiny squid, only 2 cm long
These are juvenile squid, about 2 cm long. They are nearly transparent.
giant pacific octopus, juvenile, only 1 cm
This is a juvenile Giant Pacific Octopus, only 1 cm wide, complete with 2 huge eyes, and 8 perfect legs.

Personal Log

My days have developed a routine now:  wake at 3:30 am (ugh), start my shift in the acoustics lab about 4:00, breakfast at 7:30, lunch at 11:30, end my shift at 4:00 pm, dinner at 5:30, shower, in bed by 8:00.

my window and life boats
See the orange life saving ring? My window is just to the right of the ring. The 3 white canisters on the back wall hold life rafts that inflate upon release of the canister.

In between these times, I work on my Teacher at Sea log, post pictures on Facebook, read and answer e-mail, visit the bridge and ask lots of questions, and of course, process fish whenever there is a trawl (very fun).  Today marks the halfway point of our cruise!  The ship is quieter than I thought, even though there are 35 people on board, the most that I ever see might be 10 during mealtimes.  There is constant background noise of the ship’s engines, waves hitting the bow of the ship, creaks and groans of the furniture as the ship rolls, but I am used to it now, and hardly notice it.  I am thankful for the calm weather that we have had so far.

Sue Zupko: 10 Steamin’ an’ a Beamin’

NOAA Teacher at Sea: Sue Zupko
NOAA Ship: Pisces
MissionExtreme Corals 2011; explore the ocean bottom to map and study health of corals and their habitat
Geographical Area of Cruise: SE United States deep water from off Mayport, FL to St. Lucie, FL
Date: June 4, 2011

Weather Data from the Bridge
Position: 29.1° N  80.1°W
Time: 11:00 EDT
Wind Speed: calm
Visibility: 10 n.m.
Surface Water Temperature: 27.6°C
Air Temperature:27.6°C
Relative Humidity: 72%
Barometric Pressure:1018.4 mb
Water Depth: 85.81 m
Salinity: 36.55 PSU

When the strong current from the Gulf Stream stretched the tether of  the ROV  and broke one of the three fiber optic cables inside, it was time to come up with a new plan.  What do you do in the middle of the ocean if the main gear is not functioning?  Plan B.  Well, Plan B was using the spare fiber optic in the tether.  The spare one then broke as a result of being rubbed, most likely, by the sharp end of the original broken fiber during the next dive.  Now we had to go to Plan C .  Fortunately the ROV crew is experienced, and, like Boy Scouts, were prepared.  They brought a spare ROV and tethers from their lab in La Jolla (pronounced La Hoya), CA just in case.    The ship is running the sonar gear back and forth over the area we plan to dive tomorrow, mapping out the bottom, looking for coral mounds.  This process is called “mowing the lawn” since you run the beams back and forth to get complete coverage of the bottom, and it looks like the lines on the lawn left by the mower.  Think of the beam as having the shape of a flashlight’s beam shining on the floor.  Another interesting feature is that the acoustic beam can also read what fish are present.  It needs to have a swim bladder for the signal to bounce back.  When it does, based on the sound, an experienced acoustician can read what fish the signal represents.  Sharks don’t have a swim bladder like most fish do so their signals are a bit more difficult to read.

I was just up on the bridge and it seems we hit “pay dirt” (like gold miners).  The captain had been explaining to me a symbol shown on the Electronic Chart Display System (ECS).   It looks like a graphic math problem showing the intersection of lines, in this case one line running on a 110° angle with three lines parallel to each other intersecting it.  The line in the middle is a bit longer than the other two.  I asked how he knew what that symbol meant.  Apparently, there is a book for everything on the bridge.  He whipped out his handy-dandy book entitled, Chart No. 1.  It is a key to reading nautical charts (maps).  He searched for the correct page with bottom obstructions of all types and showed me that symbol and what it means.  Whenever I have a question, the bridge crew whips out a book of some type to let me see the answer.  It’s really interesting.  The Pisces is a really modern ship with the latest electronic navigation and scientific features.  The other day I asked about navigating without power.  There is a book for that.  Bowditch American Practical Navigator has everything you need to know about crossing the ocean without electronics.  As it says on my classroom door, “Reading makes life a lot easier.”  Turns out that symbol is a shipwreck.

Laura sitting in front of computer screen
Laura Kracker looks at maps

But I digress.  Back to the pay dirt (we struck gold).  Laura Kracker, our geographer started getting excited.  “Look at this!  Look at this!  Write down these coordinates.”

She went running back to the acoustics lab (where they use sound echos to map the ocean floor and the presence of fish) to mark the location along the transect (lines we’re running) because we apparently were over coral mounds.  Using  information gathered by others in years past as a guide, they were mowing the lawn with the sonar to find interesting habitat to study with the ROV.  As the ship went back and forth along the planned transect to develop a much better map than existed, Laura would radio the bridge about any changes to the courseto pinpoint the best areas for us to study over the next couple of days.

ROV crew working on transferring gear from one ROV to the other on deck
ROV crew swtiches gear from one ROV to the other

Everyone was very excited.  So, although the ROV had to be switched out, which took a lot of work, we made good use of the time on the ship.  After a whole day of mapping, it’s now late at night and the map looks gorgeous.  This is important work and many cruises are devoted entirely to mapping.  Andy David, our lead scientist, says this acoustic mapping is useful to many people and will allow more precise coral surveys for years to come.

Roy Arezzo, July 28, 2007

NOAA Teacher at Sea
Roy Arezzo
Onboard NOAA Ship Oscar Dyson
July 11 – 29, 2007

Mission: Summer Pollock Survey
Geographical Area: North Pacific, Alaska
Date: July 28, 2007

Weather Data from Bridge 
Visibility: 10 nm (nautical miles)
Wind direction:   240° (SW)
Wind speed:   10 knots
Sea wave height: 3 foot
Swell wave height: 0 feet
Seawater temperature: 8.6 °C
Sea level pressure: 1020.5 mb (millibars)
Air Temperature: 0°C
Cloud cover: 8/8, Stratus

Creature at Sea:  Roy holds a sea pen in the top picture and a basket star (bottom) from the bottom trawl study
Creature at Sea: Roy holds a sea pen

Science and Technology Log: Wrap Up 

The Echo Integration-Trawl Survey of Walleye Pollock closed the season with a total of 74 Aleutian wing trawls (AWT mid-water trawls), 19 bottom trawls, 27 Methot trawls (plankton) and 81 ConductivityTemperature-Depth Sensor Package deployments (CTD water quality checks) collecting a wealth of biological and physical oceanographic data. The crew and scientists are excited to be headed back to shore but also there is a good feeling regarding the mission of the trip and the validity of the data collection. Of the 50,840 Kg of fish netted more then half was caught in the 44 AWT mid-water trawls executed this third leg of the survey.  During this time we took the length of 16,761 individual pollock and identified 19 other species of fish.I spent some time looking at graphs of preliminary data to try and make sense of what was accomplished from the work done during the sail. This past winter had a higher incidence of sea ice relative to the previous years. Generally the colder and saltier the water, the greater the density and the deeper it sinks. Although this concept was illustrated in salinity measurements at different depths (deeper being saltier) we found this not to be true when looking at temperature profiles.

Basket star
Basket star

In the sea, deeper does not always mean colder. The Bering shelf is influenced by more than one current system and we found the data taken from the northern parts of the transect along the shelf had colder water than the southern areas as expected but along the slope near the edge of the deep basin the water remained consistently warmer relative to the shelf water despite the latitude change, rarely dipping below 1°C. Generally, we found colder water near the bottom of the shelf between 50 and 100 meters then we did near the bottom of the deeper slope at 200 meters or more. This is mainly due to ice melt in the northern latitudes slowly moving cold water along the bottom of the shelf, where as the deep basin and slope are influenced by slightly warmer currents moving northwest from the Aleutian chain. As a teacher working on the water in the east I came out here assuming the deep areas would be colder but instead I was schooled on currents and their influence on water temperatures.

Leg 3 Transects of Pollock Survey Area: Fish symbols indicate trawl locations. Circles represent CTD readings and diamonds represent the line between Russian and US fishing grounds.
Leg 3 Transects of Pollock Survey Area: Fish symbols indicate trawl locations. Circles represent CTD readings and diamonds represent the line between Russian and US fishing grounds.

Through much of the cruise the lead scientists on shift spend enormous amounts of time monitoring the acoustic signal (echograms) from sounds waves beamed below the ship. When they find a significant mass of pollock they often would take a sample – go fishing. Using patterns on computer monitors scientists are able to hypothesize which signals indicate pollock. Both the length data taken from measuring fish and the acoustic estimates are used to come up with biomass numbers. In the echogram in figure 3 there is what appears to be a signal indicating mixed size pollock. We know that pollock schools tend to be homogeneous with respect to age and size. The strong blue layer at the top of the echogram represents plankton near the surface and in this instance the fish are mostly near the bottom with larger fish indicated in blue and more evenly dispersed, while dense schools of small fish show up as odd shaped clumps with lighter colors. When we sampled this water we found this to be true; we observed two groups of pollock, large adults and small two year old juveniles. The data in Figure 4 (histogram lengths) shows the two size groups. Cannibalism may be part of the reason the smaller fish stick together in separate densely packed schools.

Temperature Profile from CTD readings
Temperature Profile from CTD readings
Conductivity (salinity) Profile from CTD readings
Conductivity (salinity) Profile from CTD readings
Echogram of trawl haul
Echogram of trawl haul
Trawl histogram
Trawl histogram

In the echogram, we see more evenly dispersed adult pollock. This is verified by the haul 92 histogram in figure 6 that shows that most of the pollock sampled where between 40 and 55 centimeters long. Looking at the distribution of pollock in our study area (Figure 7) shows a consistent band of greater incidence of fish near the slope particularly to the western parts of the study area. As the fishery scientists fine tune hydro-acoustic technology they hope to get a better understanding in zooplankton (Figure 8) trends that influence survivorship of young Pollock.  A Krill Survey would be ambitious but by looking at the higher frequency acoustic waves, verified with Methot Trawls, one can estimate krill biomass in pollock regions. Environmental monitoring of chlorophyll concentration (phytoplankton measured from CTD water samples analyzed back on shore) and krill biomass (zooplankton) relative amounts from year to year can help create a better understanding of the resources necessary to support fish stocks.

FIGURE 7: Preliminary data of pollock distribution throughout the survey area
FIGURE 7: Preliminary data of pollock distribution throughout the survey area
FIGURE 8: Preliminary data of zooplankton estimates through out the pollock survey area
FIGURE 8: Preliminary zooplankton estimates throughout the pollock survey area

I would like to thank Chief Scientist, Paul Walline and B-Watch Chief ,Patrick Ressler for taking the time to explain to me the science of hydroacoustic survey analysis and sharing with me their preliminary data.

Chief Scientist, Paul Walline, monitoring the echogram from the bridge of OSCAR DYSON.
Chief Scientist, Paul Walline, monitoring the echogram from the bridge of OSCAR DYSON.

Bird of the Day: 

The bird survey folks identified over 35 species on our trip. I became familiar at least 6 species of birds that I felt comfortable identifying on the fly. When there were hundreds of birds circling the boat there was sometimes one type of bird that stood out making identification a snap. The Auks are related to penguins and have rounder body shapes and unique flight patterns. Like penguins of the southern hemisphere, the denser body composition makes them excellent at swimming under water, but they less nimble taking off and flying in the air compared to sleeker less dense seabirds like the gulls. Unlike penguins all 13 species of auks in the northern hemisphere can fly. The two most abundant types observed onboard are the Murres and the Puffins. I was fortunate to see two species of puffin this trip, the Horned and Tufted Puffin, seemingly too exotic for the Bering Sea. Both have specialized large colorful beaks for carrying multiple prey items and attracting mates. As we sail southeast we are fortunate to be seeing more of them.

Personal Log: 

Patrick, always with a smile, takes a break from the computer screens to look at the catch.
Patrick, always with a smile, takes a break from the computer screens to look at the catch.

These last few days, despite the lack of fishing, have not been without excitement. The bottom-study video sled captured Dall’s Porpoises swimming under water as it was deployed off the stern. As we head southeast there seems to be more whales and clearer skies. This evening we saw dozens of fin whales and one pod was feeding so close that I was able to see baleen. The whales’ baleen is used to screen their plankton food.  I learned the Right Whale has asymmetrical coloring on its baleen and the right side has a lighter off-white color, which we were able to see from the port side of the ship. I would like to take this opportunity to express my gratitude to the crew of the OSCAR DYSON for their help in getting acclimated to the Bering and to NOAA’s Teacher at Sea program for providing this amazing experience.

Question of the Day 

Today’s question: What is next for the OSCAR DYSON? She is headed back out to the Bering to find rare Right Whales. Check out ship tracker at NOAA’s website or the OSCAR DYSON Web site for more info.

Previous Question: How much fish did we catch? 26,575 kilograms (summer extra credit – convert this number to pounds and metric tons)

Horned Puffin (Fratercula corniculata)
Horned Puffin (Fratercula corniculata) 
Tufted Puffin (Fratercula cirrhata)
Tufted Puffin (Fratercula cirrhata)