Alicia Gillean: Setting Sail and Seeing the Ocean Floor; June 30, 2012

NOAA Teacher at Sea
Alicia Gillean
Aboard R/V Hugh R. Sharp
June 27-July 7, 2012

Mission: Sea Scallop Survey
Geographical area of cruise: North Atlantic; Georges Bank
Date: Saturday, June 30, 2012

Weather Data from the Bridge
Latitude: 40 55.30 N
Longitude: 068 47.49 W
Relative Wind Speed: 15.6 Knots
Air Temperature: 17.44 degrees C
Humidity: 80%
Surface Seawater Temperature: 14 degrees C

Science and Technology Log

Hugh R Sharp
R/V Hugh R. Sharp in Port

Well, it took a car, two airplanes, an airport shuttle, a bus, and a short walk, but I made it to the ship in Woods Hole, MA at about 8pm on June 26, 2012! I met a few of the ship’s crew who were kind enough to show me to my room and I slept on the ship while it was in port. You can see a rather long, but informative video tour of the Hugh R. Sharp on this website and you can track the ship’s progress here.

Everyone reported to the ship at 8am on June 27, but we didn’t end up leaving port until about 2pm because of last-minute adjustments to equipment, among other reasons, so the first day was pretty much the hurry up and wait game. While waiting to leave port, we did a safety drill and heard a presentation from a NOAA employee named Deborah about the basics of sea scallops. I was intrigued by all the data that she mentioned in her presentation and talked to her about it afterwards. She is a mathematician with a passion for biology who found a way to merge the two into a career. A big part of her job is to make sense of the data collected on the scallop survey and to present it in a way that can make sense to people. She uses lots of graphs and charts to help the data tell its story. She said that estimation, graphing, and numerous math skills play a huge role in her work. She was kind enough to give me her business card so that we can chat more after I return from sea, as she isn’t sailing on this leg of the survey.

Survival Suit
Me in my survival suit during safety drill

HabCam

Once aboard the Hugh R. Sharp, I learned that this survey will actually be two surveys in one: about half of our time will be spent dredging, sorting, measuring, and weighing scallops. The other half of the time will be spent gathering data with a newly developed underwater camera system called HabCam. The HabCam is about a half-million dollar, 3,000-pound piece of scientific equipment that is controlled by a winch, operated inside the Dry Lab (kind of like a computer lab) of the ship by a joystick and a computer program that shows the depth of the HabCam and its height off the ocean floor. The pilot of the HabCam “flies” it approximately 2 meters above the ocean floor and the copilot keeps an eye on the images coming back from the HabCam. It takes 6 images per second, so there are LOTS of pictures to look at and the clarity is amazing.

HabCam
HabCam being lowered into the water
Alicia Zip Tie
My first job on the ship

The HabCam is a pretty fascinating piece of equipment that has been under development for several years and is a cooperative effort between the sea scallop industry, NOAA (National Oceanic and Atmospheric Administration), WHOI (Woods Hole Oceanographic Institution), and others. Some of the people that developed the HabCam are on the ship with me and I have had the opportunity to talk to them about its development and uses. Each conversation always seems to have a common theme: the HabCam is a work in progress. We are using version 4 of the HabCam on this scallop survey. As they test the HabCam, they notice issues and make modifications accordingly. It is interesting to see the scientific process in action. Before we left port, they were attempting to correct an issue with pressure and vibration on the winch cable that controls the HabCam while it flies through the water. They thought that covering the portion of the cable directly above the HabCam with zip ties might help break up some of the water pressure and solve the problem. So, my first job as a scientist aboard the Hugh R Sharp involved installing lots and lots of zip ties! I had to laugh when they realized a slight glitch in the plan and had to remove many of the zip ties later. Science is a process!

There are 6 people on my watch and we started with the HabCam. I had the opportunity to pilot and copilot several times. It is fascinating to see images of the seafloor that no one else had ever seen and a bit daunting to be trusted with flying such an expensive piece of equipment through the ocean! We saw skates (like a stingray), sand dollars, sea biscuits, fish, sea stars, and more.

HabCam image
One of the images from the HabCam

You can learn more about the HabCam by visiting this website.

Personal Log

Life at sea is more relaxed than I expected. For some reason, I expected there to be lots of strict rules and procedures, but so far that has not been the case. This has been a welcome surprise for me, especially since despite my extensive anti-nausea arsenal, I am experiencing a rather nasty bout of seasickness. Everyone aboard has been very sympathetic and shared their personal stories of dealing with seasickness as well as remedies for seasickness that work for them (ginger ale, standing outside, etc.). I’m hoping that spending time outside today while we dredge instead of inside flying the HabCam will help. Enough about that!

Bed on Hugh R Sharp
My bed on the Sharp

I share my berth (room) with four other ladies. There are two bunk beds with curtains around each bed to allow for a little privacy and to help darken the room if needed. The berths are in the “belly” of the ship with no windows, so room darkening really isn’t much of an issue! I do think the curtains are sort of ingenious and wish I had them back when I was living in the dorms in college. I am glad that I packed light, since there really isn’t much of a place to store things in the berth. I’m using every inch of available space and wishing that things (like my towel) would actually dry down here, but not much luck with that so far. I managed to be the first person to get drenched on the ship on the day we left and it took three days for my clothes to dry! It’s all part of the adventure, right?

Two of the people I share a room with are on the day shift (noon to midnight) and the other two are on the night shift (midnight to noon), so there really isn’t a time when all four of us are in the room at the same time. When you leave for your watch (shift), you take everything with you that you might need, so you don’t go back to the room while other people are trying to sleep.

There is a constant sucking noise that sounds a bit like wind that I always hear while in my room. I initially thought it was just the sound of the ship going over the water, but now I’m wondering if it might be some type of pump. I checked with my chief scientist Geoff Shook and he told me that the sound is actually the ship’s stabilizer fins. There are 4 fins (2 on each side) that move back and forth to dampen the vessel’s roll and provide a more comfortable, stable ride.

Question of the Day

What do you think the name “HabCam” means?

You can share your thoughts, questions, and comments in the comments section below.

Anne Byford, June 8, 2010

NOAA Teacher at Sea
Anne Byford
Aboard R/V Hugh R. Sharp
June 8 – 15, 2010

Mission: Sea Scallop Survey
Geographic Location:  off the coast of New England
June 8, 2010

Weather Data at 6pm EDT: Calm, Clear, 23˚C
Location at 6pm EDT:
Lat: 39 42.68 N
Long: 73 24.98 W
Water Depth: 86.4m

First day at sea

The first day was mostly spent steaming to the first dredge site, about 14 hours away from Lewes, Delaware. In the morning, all of the safety information was covered and those of us who had not tried an exposure suit before put one on. After the ship reached the ocean, we did a test dredge to ensure that all of the equipment was working and that we all knew what to expect.

The process is basically the same for all dredges on the Sea Scallop survey. Each tow is at a specific, pre-selected random site, using the same type of dredge, at the same angle to the bottom for the same amount of time and at the same speed as all other tows. This ensures that the data gathered is comparable from tow to tow and particularly from year to year. Once the dredge is pulled back up, it is dumped onto a sorting table on the rear deck of the ship. Everything is sorted into 4 categories: scallops, fish and squid, sea habitat (which is anything that is not scallops or finfish), human trash. Once the initial sorting is done, the sea habitat is counted by the bucket-load and dumped back into the ocean; the fish are sorted by species and weighed and counted. Some species (skates, flounder/flukes, and goosefish, also called monkfish) are also measured for length. Scallops are weighed, counted and measured. Some specific samples may be kept for researchers on shore and the rest is thrown back. Human trash is kept aboard for proper disposal later. After all of the sorting and measuring is finished, the buckets are rinsed and stacked for the next dredge, which isn’t usually that long in coming.

Sorting

Fortunately, we are not measuring things with a tape measure or having to manually input lengths into the computer. The ship has 3 “fish boards” that are electronic magnetic measuring devices that automatically send the data to the shipboard computers. Operators choose the species of fish being measured and then each fish is put on the board and a magnetic wand is used to mark the end of the tail of the fish. Each length is sent to the computer and stored. Historically, the data was collected on paper and the lists sent to a prison to be hand entered into a database. The database then had to be proofread and corrected if necessary. While the data still must be audited, it is much faster and easier, and less prone to error, to take the hand written stage of data collection out of the process.

Fish Board

Species Seen:

At the dock in Lewes: Osprey pair and at least one chick in the nest, Sea gulls

At sea: Pod of dolphins playing in the ship’s wake, jellyfish, pelicans

In the dredge: Squid, gulfstream flounder, windowpane flounder, summer flounder, spotted hake, sea robins, small skates, clearnose skates, several kinds of crabs (spider and rock), moon snails, sea stars, sand dollars, whelks, sea urchins, scallops, sea mice (polycheate worms)

Personal log:

We couldn’t have asked for better weather, clear and calm. After the safety meeting and test dredge, there was a great deal of down time until we reached the first site at about 10pm. I am on the day watch from noon to midnight and so got to sort the first real dredge. We did find scallops, ranging from about 1 inch across to about 5 inches across, but we found more sand dollars. After spending countless hours walking beaches to find even a few sand dollars, it was amazing to see hundreds or thousands on the sorting table to be tossed back as sea trash. I also discovered that you can easily loose track of time simply sitting in the sun on the deck watching the world go by.

Cary Atwood, August 1, 2005

NOAA Teacher at Sea
Cary Atwood
Onboard NOAA Ship Albatross IV
July 25 – August 5, 2005

Mission: Sea scallop survey
Geographical Area: New England
Date: August 1, 2005

Weather from the Bridge
Visibility: undetermined
Wind direction: E ( 107 degrees)
Wind speed:  12 knots
Sea wave height: 3’
Swell wave height: 0’
Sea water temperature: 14°C
Sea level pressure: 1022.2 millibars
Cloud cover: 30% Partly cloudy,cumulus

Question of the Day

Does the temperature of ocean waters change depending upon its depth?

Answer to yesterday’s question

Bilateral symmetry is the drawing of a line through an object and having it be the same on both sides as a mirror image, such as sea stars and mud stars.

Science and Technology Journal

Aside from the major science mission of the scallop survey a few other scientific investigations are taking place on the Albatross.  One such project is the CTD measurements.  C for conductivity, T for temperature and D for depth.  I will elaborate on this in tomorrow’s journal.  Another smaller project is the mapping of habitat using acoustic sounders.

Although the scallop watch crews are labeled as scientists aboard ship, with many us with our master’s degrees in a particular science specialty, only a few are fully engaged in that role for this leg. Vic Nordahl, Chief Scientist, Dvora Hart and Avis Sosa.

Vic is ultimately responsible for collecting and reporting accurate numbers of all scallops and other marine species we have documented.  The watch chiefs report the data to him, but they must audit the data before a full report is made.

Dvora, while on watch, depending upon the tow number will randomly check numbers of starfish, crabs and the weight of scallop meat and gonads.  We are collecting numeric quantities to help better determine the age and growth of scallops in different sampling areas.

Avis Sosa moonlights on these scallop survey crews during her summer vacation from teaching.  Currently she is teaching advanced placement chemistry in a large international school in Jakarta, Indonesia. She is an amazing woman with a huge supply unique life experiences from all over the world under her belt.  For the past 14 years, Avis has been working on various NOAA ships, first as a volunteer, now as a contract employee.  Over the years, she has become a source of expertise in her knowledge of marine mollusks.  While sorting through the pile, she will identify anything in it and give you not only the common name, but the scientific name as well.  Currently she is collecting specimens for the collection in the museum at the Marine Fisheries Lab. She is my role model as the quintessential independent, worldly woman!

Personal Log 

Another day of calm seas and perfect weather.  Even though I hate getting up every morning at 5 a.m., when I arrive on the fantail after breakfast, the fresh salt air and sunrises always makes the early hours worth the struggle of waking my body up.  After donning my rubber boots and “Hellies”, I take a few moments to scan the horizon, note the texture of the water, lean over the deck to watch the shape of the boat wake and breathe in the air of a brand new day.

Cary Atwood, July 31, 2005

NOAA Teacher at Sea
Cary Atwood
Onboard NOAA Ship Albatross IV
July 25 – August 5, 2005

Mission: Sea scallop survey
Geographical Area: New England
Date: July 31, 2005

Weather from the Bridge
Visibility: Clear
Wind direction: NNW (230)
Wind speed: 15 knots
Sea wave height: unknown
Swell wave height: unknown
Seawater temperature: 11.4° C
Sea level pressure: 1012 millibars
Cloud cover: Dense Fog

Question of the Day 

What is bilateral symmetry?

Answer to yesterday’s question: The Hermit Crab

Science and Technology Log

As we comb through our dredge piles, intent on finding scallops, one of the most prolific creatures I notice is the Hermit Crab of the family Pagurus.  Hermit crabs are common on every coast of the United States and like many people, I am drawn to their special ability to take up residence in cast off mollusk shells. Just as we grow out of shoes when our feet grow, so must they find new homes as they age.  When seen without their shell, their abdomen is coiled, soft and very pink.  They carry their shell with them, and when threatened or attacked are able to retreat quickly for protection.  Hermit crabs are highly adapted to  carry around their permanent burden of a home because they have special appendages on their midsection segment for clinging to the spiral support of a marine snail shell. Their long antennae and large socketless eyes give them a distinct, non-threatening but whimsical  look….and it makes me want to take one home-but of course I couldn’t offer it the same kind of home it already has.

Personal Log

The six hour shifts for the scallop survey are taking its toll on my sleep needs. Every day I feel I am further behind and will never catch up.  This morning I truly did not feel awake until about 10am, even though my watch began at 6 a.m.  My daily schedule consists of the basics: eat, work, eat, relax, sleep, eat and work.  I don’t know how the crew can adjust to this kind of schedule for months on end as they go to sea.  It takes a very special person to adjust to the physical demands, let alone the demands of leaving family behind to come to sea.  However, some of the guys on board have been doing it for 20+years!

Coming to sea has a magnetic pull for some….is it the vast water and open horizons? Is it the need to assert some sort of independence? Is it the opportunity to be a part of something so much larger than one’s self?  As I speak to some of the deck hands, they are generally happy to be working for NOAA and away from the uncertainty of fishing or lobstering. In part it’s having steady work not influenced by the vagaries of what is caught at sea. These days, with the Atlantic fishery recovering, the catch is more consistent. Of the two deck hands I have come to know, both have a far away look in their eye—missing some of the action on a fishing boat, but still in love with the sea.

Cary Atwood, July 30, 2005

NOAA Teacher at Sea
Cary Atwood
Onboard NOAA Ship Albatross IV
July 25 – August 5, 2005

Mission: Sea scallop survey
Geographical Area: New England
Date: July 30, 2005

Weather from the Bridge
Visibility: Clear
Wind direction: NNW (230)
Wind speed: 15 knots
Sea wave height: unknown
Swell wave height: unknown
Seawater temperature: 11.4° C
Sea level pressure: 1012 millibars
Cloud cover: Dense Fog

Question of the Day:

What kind of crab makes its home in an abandoned snail shell?

Answer to yesterday’s question: Lines- a word used on a ship meaning ropes; Bosun- a very old word derived from “Boat Swain”- meaning the lead fisherman; Steam- the distance to be traveled on a ship from one destination to the next; Swell- wave action –when the action is greater, the difference between the tip of the wave and the trough represents the swell.

Science and Technology Log 

In the past few days, pods of humpback whales have been sighted near our ship.  I grab my binoculars and watch their show.  They are very acrobatic whales, breaching (jumping above the water), slapping their flippers and lobtailing—meaning they dive below the surface leaving only their large tail fluke showing as they wave it in the air.  If you are lucky enough to get close to a humpback whale, you might be able to see the distinctive markings on the underside of their flukes.  These markings are used to identify individual whales. It is hard to imagine the immense size of this mammal as they reach from 36 to 52 feet in length and weigh up to 40 tons

Humpbacks can be found worldwide and in the winter they migrate south to the Caribbean. Their summer feeding grounds are the Gulf of Maine to Iceland.  Humpbacks were commercially fished almost to the brink of extinction in the 1800’s as whaling ships plied their trade all along the Atlantic coastline, making many fisherman and coastal communities very wealthy. Once they were listed on the endangered species list in 1966 it protected them from commercial harvest.  Their numbers have recovered and it is estimated that 8000-10,000 live and feed in the waters of the North Atlantic.  Seeing these whales is a truly special experience

Personal Log– a poem for humpbacks

Humpbacks
On dark waters
You rise
And reach for the sky
Your fluke
Like a signature
Tells all who are near
This is my playground
Too I have returned from the
Brink of extinction.
Atlantic waters
Give me life
Help them remember
I could have been
A ghostly memory
Of times past.
Now, I inspire awe and hope
For the future.