Emily Whalen: Trawling in Cape Cod Bay, April 29, 2015

NOAA Teacher at Sea
Emily Whalen
Aboard NOAA Ship Henry B. Bigelow
April 27 – May 10, 2015

Mission: Spring Bottom Trawl Survey, Leg IV
Geographical Area of Cruise: Gulf of Maine

Date: April 29, 2015

Weather Data:
GPS location:  4251.770’N, 07043.695’W
Sky condition:  Cloudy
Wind: 10 kts NNW
Wave height: 1-2 feet
Water temperature:  6.2○ C
Air temperature:  8.1○ C

Science and Technology Log:

On board the Henry B. Bigelow we are working to complete the fourth and final leg of the spring bottom trawl survey. Since 1948, NOAA has sent ships along the east coast from Cape Hatteras to the Scotian Shelf to catch, identify, measure and collect the fish and invertebrates from the sea floor. Scientists and fishermen use this data to assess the health of the ocean and make management decisions about fish stocks.

What do you recognize on this chart?  Do you know where Derry, NH is on the map?
This is the area that we will be trawling. Each blue circle represents one of the sites that we will sample. We are covering a LOT of ground! Image courtesy of NOAA.

Today I am going to give you a rundown of the small role that I play in this process. I am on the noon to midnight watch with a crew of six other scientists, which means that we are responsible for processing everything caught in the giant trawl net on board during those hours. During the first three legs of the survey, the Bigelow has sampled over 300 sites. We are working to finish the survey by completing the remaining sites, which are scattered throughout Cape Cod Bay and the Gulf of Maine.  The data collected on this trip will be added to data from similar trips that NOAA has taken each spring for almost 60 years.  These huge sets of data allow scientists to track species that are dwindling, recovering, thriving or shifting habitats.

The CTD ready to deploy.
The CTD ready to deploy.

At each sampling station, the ship first drops a man-sized piece of equipment called a CTD to the sea floor. The CTD measures conductivity, temperature and depth, hence its name.  Using the conductivity measurement, the CTD software also calculates salinity, which is the amount of dissolved salt in the water.  It also has light sensors that are used to measure how much light is penetrating through the water.

While the CTD is in the water,  the deck crew prepares the trawl net and streams it from the back of the ship.  The net is towed by a set of hydraulic winches that are controlled by a sophisticated autotrawl system.  The system senses the tension on each trawl warp and will pay out or reel in cable to ensure that the net is fishing properly.

Once deployed, the net sinks to the bottom and the ship tows it for twenty minutes, which is a little more than one nautical mile. The mouth of the net is rectangular so that it can open up wide and catch the most fish.  The bottom edge of the mouth has something called a rockhopper sweep on it, which is made of a series of heavy disks that roll along the rocky bottom instead of getting hung up or tangled.  The top edge of the net has floats along it to hold it wide open.   There are sensors positioned throughout the net that send data back to the ship about the shape of the net’s mouth, the water temperature on the bottom, the amount of contact with the bottom, the speed of water through the net and the direction that the water is flowing through the net.  It is important that each tow is standardized like this so that the fish populations in the sample areas aren’t misrepresented by the catch.   For example, if the net was twisted or didn’t open properly, the catch might be very small, even in an area that is teaming with fish.

Do you think this is what trawl nets looked like in 1948?
This is what the net looks like when it is coming back on board. The deck hands are guiding the trawl warps onto the big black spools. The whole process is powered by two hydraulic winches.

After twenty minutes, the net is hauled back onto the boat using heavy-duty winches.  The science crew changes into brightly colored foul weather gear and heads to the wet lab, where we wait to see what we’ve caught in the net. The watch chief turns the music up and everyone goes to their station along a conveyor belt the transports the fish from outside on the deck to inside the lab. We sort the catch by species into baskets and buckets, working at a slow, comfortable pace when the catch is small, or at a rapid fire, breakneck speed when the catch is large.

If you guessed 'sponges', then you are correct!
This is the conveyor belt that transports the catch from the deck into the wetlab. The crew works to sort things into buckets. Do you know what these chunky yellow blobs that we caught this time are?

After that, the species and weight of each container is recorded into the Fisheries Scientific Computing System (FSCS), which is an amazing software system that allows our team of seven people to collect an enormous amount of data very quickly. Then we work in teams of two to process each fish at work stations using a barcode scanner, magnetic lengthing board, digital scale, fillet knives, tweezers, two touch screen monitors, a freshwater hose, scannable stickers, envelopes, baggies, jars and finally a conveyor belt that leads to a chute that returns the catch back to the ocean.  To picture what this looks like, imagine a grocery store checkout line crossed with an arcade crossed with a water park crossed with an operating room.  Add in some music playing from an ipod and it’s a pretty raucous scene!

The data that we collect for each fish varies.  At a bare minimum, we will measure the length of the fish, which is electronically transmitted into FSCS.  For some fish, we also record the weight, sex and stage of maturity.  This also often includes taking tissue samples and packaging them up so that they can be studied back at the lab.  Fortunately, for each fish, the FSCS screen automatically prompts us about which measurements need to be taken and samples need to be kept.  For some fish, we cut out and label a small piece of gonad or some scales.  We collect the otoliths, or ear bones from many fish.

It does not look this neat and tidy when we are working!
These are the work stations in the wet lab. The cutters stand on the left processing the fish, and the recorders stand on the right.These bones can be used to determine the age of each fish because they are made of rings of calcium carbonate that accumulate over time.

Most of the samples will got back to the Northeast Fisheries Science Center where they will be processed by NOAA scientists.  Some of them will go to other scientists from universities and other labs who have requested special sampling from the Bigelow.  It’s like we are working on a dozen different research projects all at once!

 

 

 

Something to Think About:

Below are two pictures that I took from the flying bridge as we departed from the Coast Guard Station in Boston. They were taken just moments apart from each other. Why do you think that the area in the first picture has been built up with beautiful skyscrapers while the area in the second picture is filled with shipping containers and industry? Which area do you think is more important to the city? Post your thoughts in the comment section below.

Rows of shipping containers. What do you think is inside them?
Downtown Boston.  Just a mile from the shipping containers.  Why do you think this area is so different from the previous picture?
Downtown Boston. Just a mile from the shipping containers. Why do you think this area is so different from the previous picture?

 

 

 

 

 

 

 

 

 

Personal Log

Believe it or not, I actually feel very relaxed on board the Bigelow!  The food is excellent, my stateroom is comfortable and all I have to do is follow the instructions of the crew and the FSCS.  The internet is fast enough to occasionally check my email, but not fast enough to stream music or obsessively read articles I find on Twitter.  The gentle rocking of the boat is relaxing, and there is a constant supply of coffee and yogurt.  I have already read one whole book (Paper Towns by John Greene) and later tonight I will go to the onboard library and choose another.  That said, I do miss my family and my dog and I’m sure that in a few days I will start to miss my students too!

If the description above doesn’t make you want to consider volunteering on a NOAA cruise, maybe the radical outfits will.  On the left, you can see me trying on my Mustang Suit, which is designed to keep me safe in the unlikely event that the ship sinks.  On the right, you can see me in my stylish yellow foul weather pants.  They look even better when they are covered in sparkling fish scales!

Seriously, they keep me totally dry!
Banana Yellow Pants: SO 2015! Photo taken by fellow volunteer Megan Plourde.
Seriously, do I look awesome, or what?
This is a Mustang Suit. If you owned one of these, where would you most like to wear it? Photo taken by IT Specialist Heidi Marotta.

That’s it for now!  What topics would you like to hear more about?  If you post your questions in the comment section below, I will try to answer them in my next blog post.

Sue Zupko, Destination: Calibration, September 7, 2014

NOAA Teacher at Sea
Sue Zupko
Aboard NOAA Ship Henry B. Bigelow
September 7-19, 2014

Mission: Autumn Bottom Trawl Leg I
Geographic Area of Cruise: Atlantic Ocean from Cape May, NJ to Cape Hatteras, NC
Date: September 7, 2014

Weather Data from the Bridge
Lat 41°31.3’N     Lon 071°20.8W
Present Weather PC
Visibility 10 nm
Wind 010° 9kts
Sea Level Pressure 1019.8
Sea Wave Height 1-2 ft
Temperature: Sea Water 22°C  Air 28°

Science and Technology Log

Flexibility is the key. Our sail date was changed several times due to mechanical issues. I’m ok with that. It beats getting out in the middle of the ocean and not having things work properly. We weren’t sure exactly when the Bigelow would sail as of Thursday, but were pretty sure it would be today at 10:00 am. NOAA had me fly out to get onboard.

Arrival at airport
Arrival at airport

 

What a blessing that was. I was able to get acclimated (used to) to the ship, meet some crew members, and organize my belongings.

Mrs. Zupko beside the Henry B. Bigelow.
Mrs. Zupko beside the Henry B. Bigelow.

That is a big deal since when docked, nothing is moving. Once we got underway, the ship rocks and rolls. Pencils loose in a drawer aren’t a good idea. Where to store the flashlight? Can I find my necklace in the morning? It’s about routine. The locker (my closet) is noisy to open and close and must be kept closed when underway. Try not to forget things since you have to open that door again–and you have to hold the door since it swings and will bang. Someone is always sleeping. Right now my roommate is sleeping so I am thankful I have a quiet keyboard. She has earplugs in and told me I wouldn’t bother her. I also got to pick my berth (bed), which is on the bottom. There will be four of us in the room when everyone arrives tonight–all scientists.

So far I have had no “duties” other than blogging. When we start trawling, I will work noon-midnight. One of the scientists on my watch, Nicole, gave me a tour today and explained what I will be doing. My foul weather gear consists of heavy orange bib coveralls, a heavy yellow jacket with super long sleeves, and big rubber boots which come up to my knees. I brought inserts to go in the boots since I’ll be standing–a lot. Bought some new shoes that are slip-ons so I can get out of my foul weather gear as soon as we are done processing the fish. I learned that we probably will have over 100 trawls on this leg of the Autumn Trawl Survey and we will climb in and out of our gear often.

Let me explain a bit about how things will happen. Over the ship’s intercom, which will be heard everywhere except our staterooms, the galley, and the lounge, there is a (Bing….Bong….) “Attention on the Bigelow. Streaming….” This means the nets are being let out and will be at the bottom about 20 minutes. What can I do for 20 minutes? Help me out and vote on my poll.

The blue trawl doors on the deck will be added to the net.
The blue trawl doors on the deck will be added to the net.

As the net is let out, blue “trawl doors” attached to the net sink to the bottom, holding the net down and keeping the mouth of the net open. Now, the amount of time it takes to bring the net up varies. The net could have been 24 m down or 350 m down. When they start bringing in the net, the NOAA crew will make an announcement (Bing….Bong….)”Haul back.” They will show me how to find the depth on the equipment so I will be able to judge when to be ready. When the net comes up, the fish will be dumped on a table called a checker. If there are too many, they get dumped on the deck (called a deck tow). I hope it fits in the checker since it will be less work. Imagine picking up all those fish from the deck and putting them in containers.

Once in the checker, they will be fed to a conveyor belt which takes them into the wet lab for processing. We will sort the critters and organic “trash” into buckets by species. (I cringed at the word trash being used for wonderful creatures such as sponges and corals. However, Nicole explained that these are just not our main animals of interest. It is similar to weeds. A weed is any plant you don’t want in a specific flower bed. I love wildflowers, but they don’t always work well in my garden.)

The person in charge (called the “watch” chief) will weigh and label the fish and send the container on. Some fish will be selected for extra information. Others will be released into the sea. Animals that we keep will be for further research.

The work we are doing is very important to monitor the ocean’s health. Health to the ocean, means health to us. If the ocean isn’t healthy, we had better find out why and correct it. It’s like a nurse takes your temperature and looks at your symptoms when you are sick. We are the nurses checking on the sea. Others will analyze the symptoms and come up with a plan to correct any problems. I will give more information on our work later.

Meet the NOAA Crew

Ensign Erick Estela Gomez is originally from Puerto Rico. Most of my dealings when I boarded the ship were with him since he was the OOD, Officer of the Deck, for the weekend. In between his filling in reports and checking on the ship’s systems, we had a chance to talk. He is very personable and has a brilliant smile. Maybe his smile is infectious since he just got engaged to be married and is very happy. Added to his many abilities, he speaks four languages. He explained that he received an Environmental Science degree from the University of Puerto Rico. Most NOAA officers have a science or engineering degree or 60 credit hours in math and science. I need to check my records and see if I have that much. Maybe I could be a NOAA Corps officer.

Ensign Estela’s favorite part of his job is steering the ship. I enjoyed doing that when aboard the Pisces. It is a challenge. While he was off doing a chore, I sat in one of the two tall chairs on the bridge (operations center of ship). When he was done, he explained, very politely, that it is ship’s custom that no one except the captain sit in those chairs. He has been an ensign 1.5 years and said he will not sit in one of those as a sign of respect until he has earned it himself by being appointed to be a captain of a ship. I guess I always figured it was like Captain Kirk leaving Scotty or Spock in charge and they would sit in his chair to give orders. But, Ensign Estela has a lot of respect for earning one’s rank and will sit there when appropriate. So, no cool chair for me on the bridge now.

Ensign Estela paused to really consider what tool he couldn’t live without when doing his job since he uses a lot of important tools. He decided on radar. It can be very foggy and this tool helps avoid collisions (crashes). If he invented a tool, it would be a fog-clearing machine to be able to see smaller vessels (boats) or obstructions.

There are collateral (other) duties for him. He is responsible for inventorying all the equipment on board. Every computer. Every pillow. He also needs to make sure things are in working order. If boots wear out, he needs to order more. That means managing a lot of paper so he needs organization skills. His main duty, however, is navigation officer. He checks the tides and currents and posts all that information on a white board on the bridge. Maintaining charts, ship’s routes, and flags indicating our status are part of his job.  I enjoyed learning a bit more from Ensign Estela on plotting the course using triangles. Triangles provide a nice straight edge.

His advice to my students, and any young person, is to keep up your math and science. Don’t sit in front of the TV or computer, get outside and do things. It’s obvious he does since he bicycles, fishes, and enjoys salsa dancing for relaxation. We call this Sharpening the Saw.

Personal Log

This is the ships call sign.
This is the ships call sign.

This week my students are studying how to communicate across distances on the ocean. How do ships communicate, for example? A ship might not have a radio. Flags work. There is a flag which states what country you are from. There are flags that say you have a net or a diver in the water. There are flags which tell your call sign if you want to speak by radio. There is even a flag for every letter of the alphabet. All these flags are up on the flying bridge, the highest deck on the ship.

Did You Know?

The ship usually uses true north for navigation. However, if that system fails, it uses magnetic north. North is 0°. That is like 90° on a coordinate grid. That is a bit confusing. We use degrees on maps all the time. Just remember that 0°N is used for navigation and wind direction.

Question of the Day 

Something to Think About

A tradition on board a ship is to remove one’s hat in the mess hall (dining area) and to not wear foul weather gear there. The mess hall was used during war as the hospital. People died on those tables and it is a sign of respect to remove one’s hat. Hats are often used to show respect. People remove their hats at a ball game to sing the national anthem. Men tip their hats to acknowledge a woman’s presence. People remove their hats in eating establishments. It is good to learn a country’s or culture’s (such as a ship) customs so as not to offend someone. That is also a sign of respect. When visiting churches while a tourist in Russia, I covered my head and wore a skirt, as is their custom. On board ship, once I leave my room for my watch, I shouldn’t return until my watch is over. That means carrying my computer, cameras, notes, jacket, phone, cup, water bottle, etc. with me so I don’t disturb those asleep. It’s just like being quiet in the halls at school. Guess what? They don’t want us talking in these halls either since someone is always sleeping. It is rude to disturb others, whether it be their sleep or learning.

Christopher Faist: Beast or Famine, July 30, 2011

NOAA Teacher at Sea
Chris Faist
Aboard NOAA Ship Henry B. Bigelow
July 20 — August 1, 2011

Mission: Cetacean and Seabird Abundance Survey
Geographical Area: North Atlantic
Date: July 30, 2011

Weather Data
Air Temp:  19 ºC
Water Temp: 18 ºC
Wind Speed: 12 knots
Water Depth: 64 meters

Science and Technology Log

When traveling in the ocean you never know what you will get.  Scientists can try to predict the weather or the amount of animals that will be seen in a particular area but nothing is as valuable as going to the area and recording what you see.  For the last couple of days we have been traveling in deep water off the continental shelf of the east coast of the United States.  Yesterday, we made a turn toward the edge of the shelf and we were very surprised by what we found.  (Check the Ship Tracker to view our path.)

The ocean can best be described as a patchy, dynamic environment.  Some days we have traveled for hours and not seen a single animal but on days like yesterday, we saw so many animals our single data recorder was busy all day.  Since the start of this cruise we have averaged about 30 sightings a days.  Yesterday, we had 30 sightings in the first 30 minutes of observation and ended with over 115 sightings.

Two Common Dolphins
Two Common Dolphins

Species ranged from abundant Common Dolphin, to rare and elusive beaked whales.  The sighting conditions were so outstanding the Marine Mammal Observers were identifying everything from a small warbler to the second largest whale, a Fin Whale.  Large whales, like Sei and Minke Whales, were concentrated in one area, while the dolphins were seen in other areas.  We passed over several undersea canyons and cetacean abundance over these canyons was like nothing one of the scientists had ever seen.

Two tools in the ship’s wide array of scientific tools, help scientists document the small animals that the whales and dolphins might be feeding on over the top of the canyons.  One is the XBT, or Expendable Bathythermograph, and the second is a VPR, or Video Plankton Recorder.  The XBT is launched from the moving ship to document the temperature  and water density along the ship’s track.  They are inexpensive and record data in real-time, giving accurate and up to date information about the area the animals are most abundant.  The VPR is a tool used at night, while the ship moves slowly, to take pictures of the plankton that occurs along our route.

Example of a VPR image
Example of a VPR image

The combination of temperature, depth and photographs of plankton gives scientists a clear picture of the environment that congregates large densities of cetaceans.  By understanding the factors that contribute to cetacean population changes, scientists are able to make recommendations to lawmakers about how to protect this natural resource from human impact like bycatch from the fishing industry or ship strikes in commonly trafficked shipping lanes.

Personal Log

I am disappointed that we only have two days left on our trip.  I have thoroughly enjoyed my time at sea.  Crazy weather this morning of 30 knot winds and 6-8 foot seas will not be a fun memory but thankfully, this evening the weather settled down and we watched a beautiful sunset while playing games on the top deck.  I am not sure that I could be a marine mammal observer but I look forward to taking this unique opportunity and turning it into a learning experience for my students.

Since this will be my last post from sea I thought I would leave you with some images of ocean life that was not a marine mammal or seabird.  Enjoy.

Flying Fish
Flying Fish
Blue Shark
Blue Shark
Dusky Shark
Dusky Shark

Christopher Faist: Introduction, July 14, 2011

NOAA Teacher at Sea
Chris Faist
Aboard NOAA Ship Henry B. Bigelow
July 20 — August 1, 2011

Mission: Cetacean Abundance Survey
Geographical Area: North Atlantic
Date: July 14, 2011

Personal Log

My name is Chris Faist and I am a NOAA Teacher At Sea participant for the 2011 field season aboard NOAA Ship Henry B. Bigelow.  I teach middle school life science in southern California at Carmel Valley Middle School.  In a few days I will be traveling from Rhode Island to the coastal waters off the east coast to experience the North Atlantic for the first time.

I have been assigned to a cetacean (whale and dolphin), sea turtle and seabird survey cruise in the North Atlantic.  The cruise objectives are to:
1) determine the distribution and abundance of cetaceans, sea turtles and sea birds within the study area;
2) collect vocalizations of cetaceans using passive acoustic arrays;
3) determine the distribution and relative abundance of plankton;
4) collect hydrographic and meteorological data;
5) when possible, collect biopsy samples and photo-identification pictures of cetaceans.

Chris Faist with a Gray Whale
Chris Faist with a Gray Whale

As the trained observers look for animals, my job will be to record their observations in a computer system.  They will be reporting what species they see, the approximate number and location of the animals which I will then input into the ship’s computer.  These observations, as well as the recordings taken from our underwater microphone, or hydrophone, will allow scientists back in the lab to estimate the number of animals that live off the east coast of the United States.

All of my previous boat trips have been in the Pacific Ocean, so this cruise will give me an opportunity to see whales, like the North Atlantic Right Whale, that I have never seen before.

Wish me luck!