NOAA Teacher at Sea: Annmarie Babicki
NOAA Ship Name: Oregon II
Mission: Bottom Longline Survey 2010
Geographical area of cruise: Gulf of Mexico
Date: August 27, 2010
Annmarie Babicki, August 20, 2010
NOAA Teacher at Sea: Annmarie Babicki
NOAA Ship Name: Oregon II
Mission: Bottom Longline Survey 2010
Geographical area of cruise: Gulf of Mexico
Date August 20, 2010
Weather Data from the Bridge
Science and Technology:
Personal Log
Annmarie Babicki, August 17, 2010
Weather Data from the bridge
Science and Technology:


This really was no ordinary night. We were about 40 miles off shore from Cedar Keys, FL, at about 11 P.M., when we saw a small boat drifting about 3/4 mile from us with no lights on. The officers on the bridge saw a red flare shoot into the air, so they knew the boat could be in distress. Our ship got close enough so that they could shine a light onto it and kept track of them as it drifted. The NOAA officers talked to the boaters via radio and discovered that they had left port at 7 A.M. and that the motor on the boat kicked out about 2 P.M. They had been floating for nine hours and in a boat they could not repair. We were so far off shore, it was certainly understandable that they were very relieved to see us and get the help they needed.
Personal Log
Annmarie Babicki, August 15, 2010
NOAA Teacher at Sea: Annmarie Babicki
NOAA Ship Name: Oregon II
Mission: Shark and Red Snapper Bottom Longlining Survey
Geographical area of cruise: Gulf of Mexico
Date: August 15, 2010
Weather Data from the Bridge
Latitude: 26.96 degrees North
Longitude: 83.18 degrees West
Clouds: scattered clouds
Winds: 6.13 kts.
Air Temperature: 33.5 C or
Barometric Pressure: 1014.93
Science and Technology:
Today was another fantastic day of seeing biology at its best. I had the opportunity to observe the dissection of a sharpnose shark. It is a small shark (about 2′ long) and rather docile, so it has been a good shark for me to practice on learning how to handle sharks. The Chief Scientist works with many other scientists who are researching the reproduction of a variety of sharks in the Gulf. Although this species of shark is not the one that he is researching (he is researching the blacknose shark), shark colleagues throughout the Gulf work together in order to obtain as much data as possible, and therefore collect data for one another. Scientists look at the reproductive stages by observing and performing tests on the reproductive organs. The shark dissected was a female in advanced puberty, but was in the process of collecting developing eggs. The samples taken on this shark were the follicles, where the eggs are stored, a piece of tissue and a blood sample. They will be taken to the NOAA lab in Pascagoula for examination.


One recent finding on the blacknose shark study is that it was thought to reproduce annually. The Shark Scientist has recently found samples of blacknose sharks that show some reproduce biennially and some annually. This came about by looking at the physical features and chemical makeup of the sharks. The Chief Scientist stated that they will need to go back and review all of the data they have collected on these sharks over the many seasons they have been conducting the bottom longline survey. The reason why this is so important is that the federal regulation of the catch is based in part on this data. The outcome could be that the shark population is being depleted at a faster rate than was expected or the population is larger than anticipated, which means the catch regulations could be changed to reflect that. The shark biologist and the shark endocrinologist ( researching the hormonal makeup of sharks) were both sure that their data was accurate and valid, yet their results contradicted one another. As you would hope, these scientists are open-minded enough to review their findings again and will try to solve this unexpected puzzle.
Personal Log
Annmarie Babicki, August 13, 2010

Weather Data from the Bridge
Science and Technology:

On a lighter note, yesterday I was able to tag my first shark. The sandbar shark was large enough to be brought up in the cradle. The Chief Scientist made the slit just below the dorsal fin, while two other assistants held the shark in place. I did not get the tag in on the first try, but finally did get it into position. The shark’s skin was so tough and full of razor-like scales. If a shark’s tail slaps and hits you, it can leave a burn-like mark that is very painful. Hopefully I will not have that experience while I’m here. Tagging the shark was amazing and frightening all at the same time. I was very aware that I needed to get it done quickly before the shark became restless. A shark’s movements are swift and powerful and you don’t want to be in their way. Everyone out here has a great respect for these animals and appreciates the beautiful creatures that they are. I, too, am learning what they already know.


Personal Log
I almost never know where to begin as I write a blog. There is always so much going on, so much to see, learn, and write about, it is sometimes overwhelming. I always have questions for everyone here and they are willing to take the time to answer them with great detail. Today the Chief Scientist was explaining to me about the swim bladder on a particular fish that we pulled out at one of the stations. One of the lessons in the ocean unit is about swim bladders, so I was very curious to hear more about them. After listening to him, I came away with a better understanding, which I will be able to share with my students.
Well, we all like to eat and if you like really good food and lots of variety, the Oregon II is the place to be. Our chef served in the Navy as a Culinary Specialist and upon retiring joined NOAA. You can tell he loves his job and that he’s not just cooking. He creates meals that tickle all of your taste buds and some you never knew you had. No one misses mealtime around here. And if you think you may, he will put a plate aside for you so that you don’t miss his luscious meal. If you’re sitting in the mess hall you hear lots of “thank you’s” and if you look at the chef, you will see a wide, proud smile on his face.
When I can, I try to head up to the bridge to learn about all the complicated and sophisticated electronics that this ship is furnished with. The equipment provides a staggering amount of information that the officers must analyze prior to making decisions about how to manuever their way from station to station. I was told that it is very unlikely a NOAA ship can get lost at sea. There are multiple systems in place, so that if one fails, there is at least one other to take its place. Even though the ship has navigational and radar systems, the officers continue to use paper nautical charts as a backup. The Captain and all of the officers who sail this ship love what they do and put safety for everyone above all else.

“Answer to the Question of the Day”
The wet lab of the ship is where the scientists process marine life and store supplies they will need to work with while they are out to sea. In the dry lab you will find computers that are used entering data and for general communications.
“Question of the Day” Is there a fish that really flies?
Annmarie Babicki, August 10, 2010
Time:NOAA Teacher at Sea: Annmarie Babicki
Weather Data
Science and Technology:


The methodology used to collect data on sharks is called bottom longlining. This is when each hook are baited with mackerel and put on a gangion. We cut our own bait and attach it to the hooks. Each hook is assigned a number, one to one hundred, so that it can be tracked. That line is then systematically hooked onto another line that runs one nautical mile. Both ends of the line have what are called hi-flyers that float vertically in the water. They are bright orange and have a blinking light on the top, so that they can be seen from a distance. There is a weight placed on both ends of the line and one in the middle. The weights help to keep the baited lines well below the surface. After the last gangion is put on, we wait one hour and then begin to pull in all hundred lines. During this entire process the ship is moving, which can be sometimes challenging, especially in bad weather.



Although the focus of this survey is sharks, data is collected on all fishes that are captured. After the fish are pulled up on deck, data is collected and recorded by the hook number. The handling of sharks is different from the handling of fish. Only sharks are fitted with a tag, which does not hurt them. There are two types of tags, but to date we have only used one type. In order to attach the yellow tag, a small slit is made underneath the dorsal fin. The tag has a sharp point on one end, which is inserted into the slit. Also a small sample (5-10 cm) of the shark’s pelvic fin is taken. This is then taken to the lab where DNA testing is done. The DNA can be used to verify known species and unknown or new species. Also, scientists can compare the population of sharks in other oceans around the globe by their DNA. What I have observed on every catch is that the scientist carefully monitors the shark to ensure it is not being stressed or could be hurt in any way.
Today we caught this beautiful and powerful scalloped hammerhead shark. When very large sharks like the hammerhead are caught, they are not pulled up by the line because it can damage them and they are too heavy to handle. Instead they are guided onto a cradle which sits in the water. Once on securely they are hoisted to the side of the ship where scientists can collect the needed data. The hammerhead weighed in at 341lb. and was 8 feet long. What a catch this was, everyone was very excited.


Personal Log
The day started out cloudy but eventually turned over to showers and then to a hard rain. We are feeling the effects of the tropical depression, which explains why it is difficult for me to stay standing for any length of time. I am hitting and seeing more walls than I care to! Also, it is a very bizarre feeling when the chair you are sitting in moves from one side of the room to the other. Luckily I have fended of sea sickness, but I did have a mild case of nausea, however, nothing that stopped me from continuing to work on deck. Thank goodness for Bonine.
Sleeping has not been much of a problem for me except when the ship’s engine changes. The engines make a deep loud growling sound that wakes me for just a few minutes. Being out in the fresh air does make me tired, so I have to set my alarm clock or I will sleep through my next shift. It’s hard to know what day it is because I am working a noon to midnight shift. You keep track of time by when the next sampling is due.
Being at sea and doing this type of research is definitely only for the hearty. The weather changes often as does the pace of the work. There are many jobs to do during sampling and I am trying to learn all of them. Baiting a hook and taking off bait has been frustrating, particularly since it has to be done quickly. The type of hook they use has a barb on it that goes in a different direction from the rest of the hook, so it doesn’t just slide out. We wear special gloves to protect our hands from the hooks and skin of the sharks, which can feel like sand paper or razor blades depending on the shark. They say that practice makes perfect. Well, I have a lot of practicing to do!
My next adventure is to learn how to hold sharks and not be afraid of them. I’ll keep you posted.
Annmarie Babicki, August 8, 2010
NOAA Teacher at Sea: Annmarie Babicki
NOAA Ship Name: Oregon II
Mission: Shark and Red Snapper Bottom Longline Survey
Geographical area of cruise: Eastern Gulf of Mexico
Date: August 8, 2010

Weather Data from the Bridge
Sea Temperature: 30.2 Celsius (C)
Dry Bulb Temperature: n/a
Wet Bulb Temperature: n/a
Barometric Pressure: 1012.97 mB
Science and Technology:
Today the sea is very calm, so it was a great opportunity to have a diver’s drill. This was a very special event because they occur only once a month, so it was great to be able to watch the drill in action. Safety is of the utmost importance in everything both ship personnel and scientists do on this ship. Prior to the dive, the Captain, Dave Nelson, called a meeting for all who were involved. Their discussions included their mission, current and potential weather changes, possibility of sharks in the water, the role of each pair of divers and what the plan is in case of an emergency. There is an in depth checklist to follow along with the recommendations of the Captain, Executive Office, Navigator, Junior Officer, Diver Master, Chief Boson, divers and skilled fisherman. Everyone on board has multiple roles and the key to everything going to plan is teamwork and safety.
The rescue boat, called a RHIB, was put into the water prior to divers going in. There were two people in the boat who monitored the divers and were there in case of an emergency. This boat costs about $125,000 and needs to be cared for carefully so that it does not incur any damage. The divers jumped in the water, which was about 80 degrees and gave the OK (a pat on the head) that they were ready to begin their mission. When they were about 12 feet down in the water, I could clearly see them (No oil in these parts).

They checked out the bow and propeller blades to make sure there was not a barnacle build up that could impact them functioning properly. The dive went off without a hitch and their diving gear was hauled out of the water prior to the divers coming aboard. The Captain explained that this was done because the equipment is over 40 pound and would make it difficult for the divers to climb the floating ladder which is over the side of the ship. After the dive was completed, they had a debriefing session, where they discussed the status of the barnacles and concluded that at this time they were not having any impact the propeller or hull.
Personal Log
What an unbelievable 24 hours. The crew and scientists have been so supportive and patient with me, as I asked them a thousand questions. They are all willing to share their time, knowledge and experiences with me. I keep a small notebook with me at all times as there is so much I am learning every minute of the day.
We have been traveling to our first survey site, which is over 400 or so miles from the port in Pascaguola, Mississippi. At a speed of about 12 knots, it will take us about 34 hours to reach our destination. This has given me time to get my “sea legs”, which I’m still working on. No sea sickness yet, and besides there’s too much I want to see and do to have time to get sick.
One thing I have been struck by is the color of the ocean. It has change color many times since we left port. It has been a muddy brown because the fresh water coming down from the Mississippi River is carrying sediment, which is then mixing with the salt water of the ocean. As we got farther away from shore, the color changed from a muddy brown, to a green and then to a very dark blue. We are currently in very deep waters (approx. 10,750 feet) and the color of the ocean is a beautiful blue like I have never seen before. It almost took my breath away.

We will reach the survey site about 2 A.M. and get to work right away. It is a 24 hour working ship, which means that surveying never stops. I am part of a group of 5, who will work noon to midnight, therefore my work will start tomorrow. I have lots to do and learn in the meantime and can’t wait to see my first shark.
“Question of the Day”: What is a fin clip? Find out tomorrow after we begin the survey.